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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237831 (52 seq.)
>W1711066507
LSCX01000011
Actinomycetota
Coriobacteriales bacterium DNF00809 [LSCX]
20301
20376
+
Gly
GCC
[ENA]
¡û
>WENV180181328
OAWM01002976
[OAWM] human gut metagenome; faeces
267
192
-
Gly
GCC
[ENA]
¢þ
>WENV180292840
OBIV01661525
[OBIV] soil metagenome; Clay
75
1
-
Gly
GCC
[ENA]
¢þ
>WENV180337183
OBLG01017618
[OBLG] human gut metagenome; human gut
1577
1502
-
Gly
GCC
[ENA]
¢þ
>WENV180412314
OBVA01000663
[OBVA] human gut metagenome; faeces
3266
3191
-
Gly
GCC
[ENA]
¢þ
>WENV180412316
OBVA01000663
[OBVA] human gut metagenome; faeces
3030
2955
-
Gly
GCC
[ENA]
¢þ
>WENV180547332
OCIU01025599
[OCIU] human gut metagenome; human gut
178
103
-
Gly
GCC
[ENA]
¢þ
>WENV180669223
OCVV011277284
[OCVV] gut metagenome; gut
7713
7788
+
Gly
GCC
[ENA]
¢þ
>WENV180669226
OCVV011277284
[OCVV] gut metagenome; gut
7713
7788
+
Gly
GCC
[ENA]
¢þ
>WENV180712219
ODFT01000052
[ODFT] human metagenome; G_DNA_Posterior fornix
20564
20489
-
Gly
GCC
[ENA]
¢þ
>WENV180942995
ODUA01001127
[ODUA] human metagenome; G_DNA_Posterior fornix
170
95
-
Gly
GCC
[ENA]
¢þ
>WENV181295511
OFHI01056287
[OFHI] soil metagenome; Clay
351
424
+
Gly
GCC
[ENA]
¢þ
>WENV181298095
OFHL01026988
[OFHL] soil metagenome; Clay
994
919
-
Gly
GCC
[ENA]
¢þ
>WENV181749648
OGQO01098926
[OGQO] human gut metagenome; faeces
437
512
+
Gly
GCC
[ENA]
¢þ
>WENV181869435
OGWX01050877
[OGWX] human gut metagenome; faeces
455
530
+
Gly
GCC
[ENA]
¢þ
>WENV181904401
OGXX01011658
[OGXX] human gut metagenome; faeces
1549
1624
+
Gly
GCC
[ENA]
¢þ
>WENV182306434
OHXC01037336
[OHXC] human gut metagenome; feces
64
139
+
Gly
GCC
[ENA]
¢þ
>WENV182360926
OICB01055693
[OICB] human gut metagenome; feces
1
76
+
Gly
GCC
[ENA]
¢þ
>WENV182515779
OIWN01003376
[OIWN] human gut metagenome; faeces
7621
7546
-
Gly
GCC
[ENA]
¢þ
>WENV182538615
OIXV01000047
[OIXV] human gut metagenome; faeces
56050
55975
-
Gly
GCC
[ENA]
¢þ
>WENV183097797
OLNE01012260
[OLNE] human gut metagenome; faeces
814
889
+
Gly
GCC
[ENA]
¢þ
>WENV183123176
OLNW01000338
[OLNW] human gut metagenome; faeces
32877
32802
-
Gly
GCC
[ENA]
¢þ
>WENV183123178
OLNW01000338
[OLNW] human gut metagenome; faeces
32626
32551
-
Gly
GCC
[ENA]
¢þ
>WENV183145762
OLOM01000952
[OLOM] human gut metagenome; faeces
13828
13753
-
Gly
GCC
[ENA]
¢þ
>WENV183161775
OLOV01016956
[OLOV] human gut metagenome; faeces
378
453
+
Gly
GCC
[ENA]
¢þ
>WENV183163104
OLOW01005524
[OLOW] human gut metagenome; faeces
3193
3268
+
Gly
GCC
[ENA]
¢þ
>WENV183172036
OLPC01002969
[OLPC] human gut metagenome; faeces
3153
3078
-
Gly
GCC
[ENA]
¢þ
>WENV183184101
OLPL01017981
[OLPL] human gut metagenome; faeces
787
862
+
Gly
GCC
[ENA]
¢þ
>WENV183185344
OLPN01006129
[OLPN] human gut metagenome; faeces
1749
1674
-
Gly
GCC
[ENA]
¢þ
>WENV183190436
OLPR01000332
[OLPR] human gut metagenome; faeces
15461
15386
-
Gly
GCC
[ENA]
¢þ
>WENV183195304
OLPT01004198
[OLPT] human gut metagenome; faeces
5097
5172
+
Gly
GCC
[ENA]
¢þ
>WENV183197753
OLPV01000043
[OLPV] human gut metagenome; faeces
94125
94200
+
Gly
GCC
[ENA]
¢þ
>WENV183197860
OLPV01000174
[OLPV] human gut metagenome; faeces
47122
47197
+
Gly
GCC
[ENA]
¢þ
>WENV183232879
OLQV01000072
[OLQV] human gut metagenome; faeces
75591
75516
-
Gly
GCC
[ENA]
¢þ
>WENV183241051
OLRA01039057
[OLRA] human gut metagenome; faeces
157
232
+
Gly
GCC
[ENA]
¢þ
>WENV183284944
OLSE01000010
[OLSE] human gut metagenome; faeces
232011
232086
+
Gly
GCC
[ENA]
¢þ
>WENV183379747
OLYC01091901
[OLYC] human gut metagenome; feces
178
103
-
Gly
GCC
[ENA]
¢þ
>WENV183519266
OMNT01000305
[OMNT] human gut metagenome; faeces
45973
46048
+
Gly
GCC
[ENA]
¢þ
>WENV183659301
OQWM01018734
[OQWM] human gut metagenome; human gut
809
884
+
Gly
GCC
[ENA]
¢þ
>WENV170540119
CWGU01000054
[CWGU] human gut metagenome; ENVO:feces
50165
50090
-
Gly
GCC
[ENA]
¢þ
>WENV170540297
CWGY01000028
[CWGY] human gut metagenome; ENVO:feces
122030
121955
-
Gly
GCC
[ENA]
¢þ
>WENV170540314
CWGY01000050
[CWGY] human gut metagenome; ENVO:feces
307
382
+
Gly
GCC
[ENA]
¢þ
>W09108652
ABTM01000001
Actinomycetota
Cryptobacterium curtum DSM 15641 [ABTM]
493541
493616
+
Gly
GCC
[ENA]
¡û
>C10102845
CP001682
Actinomycetota
Cryptobacterium curtum DSM 15641 [CP001682]
834606
834681
+
Gly
GCC
[Ensembl]
¡û
>C10111624
CP001684
Actinomycetota
Slackia heliotrinireducens DSM 20476 [CP001684]
1376233
1376308
+
Gly
GCC
[Ensembl]
¡û
>C10111626
CP001684
Actinomycetota
Slackia heliotrinireducens DSM 20476 [CP001684]
1378574
1378649
+
Gly
GCC
[Ensembl]
¡û
>C11105162
CP002628
Actinomycetota
Coriobacterium glomerans PW2 [CP002628]
1453396
1453471
+
Gly
GCC
[Ensembl]
¡û
>C161035131
CP011402
Actinomycetota
Denitrobacterium detoxificans NPOH1 [CP011402]
1292315
1292390
+
Gly
GCC
[Ensembl]
¡û
>C161035140
CP011402
Actinomycetota
Denitrobacterium detoxificans NPOH1 [CP011402]
2278529
2278604
+
Gly
GCC
[Ensembl]
¡û
>W1610907077
LSCX01000011
Actinomycetota
Coriobacteriales bacterium DNF00809 [LSCX]
20301
20376
+
Gly
GCC
[ENA]
¡û
>W1710548852
FOEC01000001
Actinomycetota
Denitrobacterium detoxificans [FOEC]
65543
65618
+
Gly
GCC
[ENA]
¡û
>W1710548882
FOEC01000009
Actinomycetota
Denitrobacterium detoxificans [FOEC]
19299
19374
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK