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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237946 (70 seq.)
>W131037605
AMFF01000209
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMFF]
6313
6238
-
Phe
GAA
[ENA]
¡û
>W131038460
AMGC01000254
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
8071
8146
+
Phe
GAA
[ENA]
¡û
>W131038499
AMGC01000439
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
1700
1625
-
Phe
GAA
[ENA]
¡û
>W131044810
AMQY01000011
Gammaproteobacteria
Halomonas jeotgali Hwa [AMQY]
17539
17614
+
Phe
GAA
[ENA]
¡û
>W1711138248
LVCQ01000013
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
1149
1074
-
Phe
GAA
[ENA]
¡û
>W1711138288
LVCQ01000118
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
5867
5792
-
Phe
GAA
[ENA]
¡û
>W131195173
ASSK01000065
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [ASSK]
6115
6040
-
Phe
GAA
[ENA]
¡û
>W131229538
AUGW01000013
Gammaproteobacteria
Oceanospirillum maris DSM 6286 [AUGW]
75640
75565
-
Phe
GAA
[ENA]
¡û
>W131229541
AUGW01000013
Gammaproteobacteria
Oceanospirillum maris DSM 6286 [AUGW]
75338
75263
-
Phe
GAA
[ENA]
¡û
>W1711372805
MDTU01000001
Gammaproteobacteria
Piscirickettsia litoralis Y2 [MDTU]
2522352
2522277
-
Phe
GAA
[ENA]
¡û
>W1711372814
MDTU01000001
Gammaproteobacteria
Piscirickettsia litoralis Y2 [MDTU]
1760010
1759935
-
Phe
GAA
[ENA]
¡û
>W1711711582
MTBA01000003
Gammaproteobacteria
Oceanospirillum sanctuarii AK56 [MTBA]
415924
415999
+
Phe
GAA
[ENA]
¡û
>W1711711585
MTBA01000003
Gammaproteobacteria
Oceanospirillum sanctuarii AK56 [MTBA]
416234
416309
+
Phe
GAA
[ENA]
¡û
>W1711726808
MTSD02000003
Gammaproteobacteria
Oceanospirillum linum [MTSD]
373642
373717
+
Phe
GAA
[ENA]
¡û
>W1711726811
MTSD02000003
Gammaproteobacteria
Oceanospirillum linum [MTSD]
373983
374058
+
Phe
GAA
[ENA]
¡û
>C171026467
CP013757
Gammaproteobacteria
Piscirickettsia salmonis AY6492A [CP013757]
299394
299469
+
Phe
GAA
-
¡û
>C171026523
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
429921
429996
+
Phe
GAA
-
¡û
>C171026581
CP013768
Gammaproteobacteria
Piscirickettsia salmonis PM23019A [CP013768]
1288292
1288367
+
Phe
GAA
-
¡û
>C171026609
CP013768
Gammaproteobacteria
Piscirickettsia salmonis PM23019A [CP013768]
2029951
2029876
-
Phe
GAA
-
¡û
>C171026637
CP013773
Gammaproteobacteria
Piscirickettsia salmonis PM37984A [CP013773]
1285371
1285446
+
Phe
GAA
-
¡û
>C171026693
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
1124422
1124497
+
Phe
GAA
-
¡û
>C171026751
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
1103403
1103478
+
Phe
GAA
-
¡û
>C171026779
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
1890236
1890161
-
Phe
GAA
-
¡û
>C171026807
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
1103658
1103733
+
Phe
GAA
-
¡û
>C171026835
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
1890507
1890432
-
Phe
GAA
-
¡û
>C171026870
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
1764555
1764630
+
Phe
GAA
-
¡û
>C171026888
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
2545858
2545783
-
Phe
GAA
-
¡û
>C171026922
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
836167
836242
+
Phe
GAA
-
¡û
>C171026957
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
1617454
1617379
-
Phe
GAA
-
¡û
>C171026990
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
2317209
2317284
+
Phe
GAA
-
¡û
>C171026997
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
3097056
3096981
-
Phe
GAA
-
¡û
>C171027031
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
1103462
1103537
+
Phe
GAA
-
¡û
>C171027059
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
1890316
1890241
-
Phe
GAA
-
¡û
>C171027094
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
1764558
1764633
+
Phe
GAA
-
¡û
>C171027112
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
2545864
2545789
-
Phe
GAA
-
¡û
>C171027150
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
1764557
1764632
+
Phe
GAA
-
¡û
>C171027168
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
2545863
2545788
-
Phe
GAA
-
¡û
>C171027214
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
2318227
2318302
+
Phe
GAA
-
¡û
>C171027221
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
3098326
3098251
-
Phe
GAA
-
¡û
>WENV180369639
OBOG01214657
[OBOG] marine metagenome; seawater
257
332
+
Phe
GAA
[ENA]
¢þ
>W141221185
AZYQ02000025
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
8559
8634
+
Phe
GAA
[ENA]
¡û
>W141221192
AZYQ02000040
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
2250
2175
-
Phe
GAA
[ENA]
¡û
>WENV170823087
MDSY01051413
[MDSY] marine metagenome; seawater
2028
1953
-
Phe
GAA
[ENA]
¢þ
>C191116630
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
2326219
2326294
+
Phe
GAA
-
¡û
>W1911652738
QBEV01000047
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
1471
1396
-
Phe
GAA
[ENA]
¡û
>W1911652759
QBEV01000639
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
290
215
-
Phe
GAA
[ENA]
¡û
>W1810054406
PDFD01000225
Gammaproteobacteria
Piscirickettsia salmonis S-GIM [PDFD]
6333
6258
-
Phe
GAA
[ENA]
¡û
>W1810535142
QDDL01000015
Gammaproteobacteria
Pelagibaculum spongiae Hp12 [QDDL]
9689
9614
-
Phe
GAA
[ENA]
¡û
>W1810535143
QDDL01000015
Gammaproteobacteria
Pelagibaculum spongiae Hp12 [QDDL]
9542
9467
-
Phe
GAA
[ENA]
¡û
>C151086954
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
89749
89824
+
Phe
GAA
[Ensembl]
¡û
>C151086991
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
2754581
2754656
+
Phe
GAA
[Ensembl]
¡û
>C151095300
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
2317205
2317280
+
Phe
GAA
-
¡û
>C151095307
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
3097054
3096979
-
Phe
GAA
-
¡û
>W1511336329
JRAD02000050
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
2250
2175
-
Phe
GAA
[ENA]
¡û
>W1511336335
JRAD02000073
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
8556
8631
+
Phe
GAA
[ENA]
¡û
>W1511337063
JRAV02000066
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
7995
8070
+
Phe
GAA
[ENA]
¡û
>W1511346437
JRHD01000173
Gammaproteobacteria
Piscirickettsia salmonis T-GIM [JRHD]
5973
5898
-
Phe
GAA
[ENA]
¡û
>W1511346439
JRHD01000200
Gammaproteobacteria
Piscirickettsia salmonis T-GIM [JRHD]
12332
12407
+
Phe
GAA
[ENA]
¡û
>W1511346899
JRHP01000255
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [JRHP]
6007
6082
+
Phe
GAA
[ENA]
¡û
>W1511657133
LELB01000020
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
9056
9131
+
Phe
GAA
[ENA]
¡û
>W1511657140
LELB01000032
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
1833
1758
-
Phe
GAA
[ENA]
¡û
>W1511657189
LELB01000235
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
5923
5848
-
Phe
GAA
[ENA]
¡û
>C161042032
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
2230540
2230615
+
Phe
GAA
[Ensembl]
¡û
>C161062475
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
2289897
2289972
+
Phe
GAA
-
¡û
>C161062482
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
3078266
3078191
-
Phe
GAA
-
¡û
>C161063142
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
2334904
2334979
+
Phe
GAA
-
¡û
>C161063149
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
3116810
3116735
-
Phe
GAA
-
¡û
>W1610949334
LVCQ01000013
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
1149
1074
-
Phe
GAA
[ENA]
¡û
>W1610949374
LVCQ01000118
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
5867
5792
-
Phe
GAA
[ENA]
¡û
>W1710538503
FNUP01000002
Gammaproteobacteria
Oleiphilus messinensis [FNUP]
373852
373927
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK