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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237966 (102 seq.)
>W1710821575
LKTM01000383
Actinomycetota
Mycobacterium gordonae [LKTM]
32231
32156
-
Asn
GTT
[ENA]
¡û
>W1710854675
LLXQ01000078
Actinomycetota
Mycobacterium kyorinense [LLXQ]
9183
9110
-
Asn
GTT
[ENA]
¡û
>W1711007107
LQOX01000006
Actinomycetota
Mycobacterium gastri [LQOX]
6101
6176
+
Asn
GTT
[ENA]
¡û
>W1711007168
LQOY01000071
Actinomycetota
Mycobacterium gordonae [LQOY]
16704
16777
+
Asn
GTT
[ENA]
¡û
>W1711007410
LQPD01000058
Actinomycetota
Mycobacterium kubicae [LQPD]
40144
40069
-
Asn
GTT
[ENA]
¡û
>W1711007445
LQPE01000046
Actinomycetota
Mycobacterium kyorinense [LQPE]
9152
9079
-
Asn
GTT
[ENA]
¡û
>W1711008027
LQPQ01000071
Actinomycetota
Mycobacterium riyadhense [LQPQ]
14252
14325
+
Asn
GTT
[ENA]
¡û
>W1711008292
LQPW01000007
Actinomycetota
Mycobacterium szulgai [LQPW]
41612
41685
+
Asn
GTT
[ENA]
¡û
>W1711008524
LQQB01000040
Actinomycetota
Mycobacterium xenopi [LQQB]
37214
37139
-
Thr
GGT
[ENA]
¡û
>W1711172705
LWCH01000324
Actinomycetota
Mycobacterium kansasii [LWCH]
18168
18093
-
Asn
GTT
[ENA]
¡û
>W1711172781
LWCJ01000134
Actinomycetota
Mycobacterium kansasii [LWCJ]
6132
6205
+
Asn
GTT
[ENA]
¡û
>W1711172829
LWCK01000136
Actinomycetota
Mycobacterium kansasii [LWCK]
26697
26622
-
Asn
GTT
[ENA]
¡û
>W1711172866
LWCL01000083
Actinomycetota
Mycobacterium kansasii [LWCL]
6186
6261
+
Asn
GTT
[ENA]
¡û
>W1711172917
LWCM01000121
Actinomycetota
Mycobacterium persicum kansasii [LWCM]
27314
27239
-
Asn
GTT
[ENA]
¡û
>W1711276204
LZHY01000029
Actinomycetota
Mycobacterium kubicae szulgai [LZHY]
124581
124656
+
Asn
GTT
[ENA]
¡û
>W1711279216
LZKJ01000193
Actinomycetota
Mycobacterium kyorinense [LZKJ]
51679
51754
+
Asn
GTT
[ENA]
¡û
>W1711279556
LZKQ01000245
Actinomycetota
Mycobacterium asiaticum [LZKQ]
207
132
-
Asn
GTT
[ENA]
¡û
>W1711279626
LZKS01000093
Actinomycetota
Mycobacterium asiaticum [LZKS]
9295
9222
-
Asn
GTT
[ENA]
¡û
>W1711280215
LZLE01000245
Actinomycetota
Mycobacterium sp. 1423905.2 [LZLE]
7799
7874
+
Asn
GTT
[ENA]
¡û
>W1711280278
LZLF01000407
Actinomycetota
Mycobacterium asiaticum [LZLF]
659
586
-
Asn
GTT
[ENA]
¡û
>W1711280468
LZLK01000047
Actinomycetota
Mycobacterium gordonae [LZLK]
65878
65803
-
Asn
GTT
[ENA]
¡û
>W1711280568
LZLM01000027
Actinomycetota
Mycobacterium asiaticum [LZLM]
13060
12987
-
Asn
GTT
[ENA]
¡û
>W1711280756
LZLQ01000015
Actinomycetota
Mycobacterium asiaticum [LZLQ]
188976
188901
-
Asn
GTT
[ENA]
¡û
>W1711280802
LZLR01000020
Actinomycetota
Mycobacterium asiaticum [LZLR]
5369
5444
+
Asn
GTT
[ENA]
¡û
>W1711280890
LZLS01000185
Actinomycetota
Mycobacterium asiaticum [LZLS]
18827
18902
+
Asn
GTT
[ENA]
¡û
>W1711281071
LZLW01000190
Actinomycetota
Mycobacterium kubicae szulgai [LZLW]
4453
4378
-
Asn
GTT
[ENA]
¡û
>W1711281104
LZLX01000161
Actinomycetota
Mycobacterium gordonae [LZLX]
34073
33998
-
Asn
GTT
[ENA]
¡û
>W1711281559
LZMH01000011
Actinomycetota
Mycobacterium asiaticum [LZMH]
16486
16411
-
Asn
GTT
[ENA]
¡û
>W1711297408
MAEM01000555
Actinomycetota
Mycobacterium gordonae [MAEM]
53572
53647
+
Asn
GTT
[ENA]
¡û
>W1711428257
MIHB01000036
Actinomycetota
Mycobacterium intermedium [MIHB]
58677
58602
-
Asn
GTT
[ENA]
¡û
>W1711428502
MIHG01000246
Actinomycetota
Mycobacterium gordonae [MIHG]
9357
9284
-
Asn
GTT
[ENA]
¡û
>W1711428503
MIHG01000257
Actinomycetota
Mycobacterium gordonae [MIHG]
7226
7301
+
Asn
GTT
[ENA]
¡û
>W1711430518
MIJC01000146
Actinomycetota
Mycobacterium intermedium [MIJC]
9032
8957
-
Asn
GTT
[ENA]
¡û
>W1711768058
MVBM01000005
Actinomycetota
Mycobacterium kansasii [MVBM]
15541
15616
+
Asn
GTT
[ENA]
¡û
>W1711768117
MVBN01000015
Actinomycetota
Mycobacterium kansasii [MVBN]
6629
6704
+
Asn
GTT
[ENA]
¡û
>W1711772230
MVHE01000026
Actinomycetota
Mycobacterium angelicum [MVHE]
31453
31378
-
Asn
GTT
[ENA]
¡û
>W1711772376
MVHI01000039
Actinomycetota
Mycobacterium asiaticum DSM 44297 [MVHI]
38892
38965
+
Asn
GTT
[ENA]
¡û
>W1711772880
MVHT01000031
Actinomycetota
Mycobacterium intermedium [MVHT]
8964
9039
+
Asn
GTT
[ENA]
¡û
>W1711773682
MVIK01000054
Actinomycetota
Mycobacterium shinjukuense [MVIK]
22848
22775
-
Asn
GTT
[ENA]
¡û
>W1711792600
MWKV01000001
Actinomycetota
Mycobacterium persicum kansasii [MWKV]
949550
949475
-
Asn
GTT
[ENA]
¡û
>W1711792645
MWKW01000001
Actinomycetota
Mycobacterium kansasii [MWKW]
869773
869698
-
Asn
GTT
[ENA]
¡û
>W1711792738
MWKY01000001
Actinomycetota
Mycobacterium kansasii [MWKY]
1036057
1035982
-
Asn
GTT
[ENA]
¡û
>W1711792784
MWKZ01000001
Actinomycetota
Mycobacterium persicum kansasii [MWKZ]
940677
940602
-
Asn
GTT
[ENA]
¡û
>W1711795870
MWQA01000001
Actinomycetota
Mycobacterium persicum kansasii [MWQA]
1021271
1021196
-
Asn
GTT
[ENA]
¡û
>W141221105
AZYN01000589
Actinomycetota
Mycobacterium gastri 'Wayne' [AZYN]
2914
2839
-
Asn
GTT
[ENA]
¡û
>W141238311
BBKA01000109
Actinomycetota
Mycobacterium kyorinense [BBKA]
2368
2441
+
Asn
GTT
[ENA]
¡û
>W141261952
CCBD010000047
Actinomycetota
Mycobacterium asiaticum DSM 44297 [CCBD]
80512
80585
+
Asn
GTT
[ENA]
¡û
>W141285505
JANY01000003
Actinomycetota
Mycobacterium kansasii 824 [JANY]
4938
5013
+
Asn
GTT
[ENA]
¡û
>W141285538
JANZ01000005
Actinomycetota
Mycobacterium kansasii 732 [JANZ]
19347
19420
+
Asn
GTT
[ENA]
¡û
>W141285586
JAOA01000003
Actinomycetota
Mycobacterium kansasii 662 [JAOA]
21362
21437
+
Asn
GTT
[ENA]
¡û
>WENV170578142
FSSH01035263
[FSSH] freshwater metagenome; drinking water
168
93
-
Asn
GTT
[ENA]
¢þ
>C191036454
CP025546
Actinomycetota
Mycobacterium paragordonae 49061 [CP025546]
4512164
4512090
-
Asn
GTT
-
¡û
>C191193255
LR130759
Actinomycetota
Mycobacterium basiliense [LR130759]
3701711
3701637
-
Asn
GTT
-
¡û
>W141727411
JNDJ01000129
Actinomycetota
Mycobacterium kansasii [JNDJ]
43008
42933
-
Asn
GTT
[ENA]
¡û
>W09117018
ACBV01000048
Actinomycetota
Mycobacterium kansasii ATCC 12478 [ACBV]
42986
42911
-
Asn
GTT
[ENA]
¡û
>C141009040
CP006835
Actinomycetota
Mycobacterium kansasii ATCC 12478 [CP006835]
1049571
1049496
-
Asn
GTT
[Ensembl]
¡û
>W1910813981
MVIF01000061
Actinomycetota
Mycobacterium persicum AFPC-000227 [MVIF]
15084
15159
+
Asn
GTT
[ENA]
¡û
>W1910989820
NKQW01000001
Actinomycetota
Mycobacterium kansasii K4 [NKQW]
1030544
1030469
-
Asn
GTT
[ENA]
¡û
>W1910989865
NKQX01000001
Actinomycetota
Mycobacterium kansasii K19 [NKQX]
1030544
1030469
-
Asn
GTT
[ENA]
¡û
>W1910989910
NKQY01000001
Actinomycetota
Mycobacterium kansasii K14 [NKQY]
1030544
1030469
-
Asn
GTT
[ENA]
¡û
>W1910989956
NKQZ01000001
Actinomycetota
Mycobacterium persicum H48 [NKQZ]
946876
946801
-
Asn
GTT
[ENA]
¡û
>W1910989976
NKRA01000001
Actinomycetota
Mycobacterium persicum H47 [NKRA]
5191354
5191429
+
Asn
GTT
[ENA]
¡û
>W1910990048
NKRB01000001
Actinomycetota
Mycobacterium kansasii 14_15 [NKRB]
1158396
1158323
-
Asn
GTT
[ENA]
¡û
>W1910990094
NKRC01000001
Actinomycetota
Mycobacterium kansasii 49_11 [NKRC]
1003631
1003556
-
Asn
GTT
[ENA]
¡û
>W1910990145
NKRD01000001
Actinomycetota
Mycobacterium kansasii 174_15_11 [NKRD]
1133749
1133676
-
Asn
GTT
[ENA]
¡û
>W1910990167
NKRE01000001
Actinomycetota
Mycobacterium ostraviense 241/15 [NKRE]
4943737
4943812
+
Asn
GTT
[ENA]
¡û
>W1810261745
PQOL01000061
Actinomycetota
Mycobacterium kansasii BR3657 [PQOL]
30076
30001
-
Asn
GTT
[ENA]
¡û
>W1810261775
PQOM01000075
Actinomycetota
Mycobacterium kansasii BR6498 [PQOM]
20593
20518
-
Asn
GTT
[ENA]
¡û
>W1810261831
PQON01000091
Actinomycetota
Mycobacterium kansasii BR7287 [PQON]
20935
20860
-
Asn
GTT
[ENA]
¡û
>W1810261875
PQOO01000042
Actinomycetota
Mycobacterium kansasii BR6884 [PQOO]
6107
6182
+
Asn
GTT
[ENA]
¡û
>W1810261919
PQOP01000045
Actinomycetota
Mycobacterium kansasii BR6849 [PQOP]
42927
42852
-
Asn
GTT
[ENA]
¡û
>W1810261972
PQOQ01000079
Actinomycetota
Mycobacterium kansasii BR10953 [PQOQ]
6107
6182
+
Asn
GTT
[ENA]
¡û
>W1810262020
PQOR01000084
Actinomycetota
Mycobacterium kansasii BR10742 [PQOR]
6107
6182
+
Asn
GTT
[ENA]
¡û
>W1810262069
PQOS01000063
Actinomycetota
Mycobacterium kansasii BR1580 [PQOS]
6107
6182
+
Asn
GTT
[ENA]
¡û
>W1810262083
PQOT01000009
Actinomycetota
Mycobacterium kansasii BR4404 [PQOT]
48449
48374
-
Asn
GTT
[ENA]
¡û
>W1810262158
PQOU01000079
Actinomycetota
Mycobacterium kansasii BR8835 [PQOU]
20598
20523
-
Asn
GTT
[ENA]
¡û
>W1810262202
PQOV01000063
Actinomycetota
Mycobacterium kansasii BR8837 [PQOV]
20593
20518
-
Asn
GTT
[ENA]
¡û
>W1810262249
PQOW01000083
Actinomycetota
Mycobacterium kansasii BR8839 [PQOW]
20960
20885
-
Asn
GTT
[ENA]
¡û
>C151052514
CP009481
Actinomycetota
Mycobacterium kansasii [CP009481]
1045029
1044954
-
Asn
GTT
[Ensembl]
¡û
>C151052607
CP009483
Actinomycetota
Mycobacterium kansasii [CP009483]
1044750
1044675
-
Asn
GTT
[Ensembl]
¡û
>W1610685537
LKTM01000383
Actinomycetota
Mycobacterium gordonae [LKTM]
32231
32156
-
Asn
GTT
[ENA]
¡û
>W1610716952
LLXQ01000078
Actinomycetota
Mycobacterium kyorinense [LLXQ]
9183
9110
-
Asn
GTT
[ENA]
¡û
>W1610981310
LWCH01000324
Actinomycetota
Mycobacterium kansasii [LWCH]
18168
18093
-
Asn
GTT
[ENA]
¡û
>W1610981386
LWCJ01000134
Actinomycetota
Mycobacterium kansasii [LWCJ]
6132
6205
+
Asn
GTT
[ENA]
¡û
>W1610981434
LWCK01000136
Actinomycetota
Mycobacterium kansasii [LWCK]
26697
26622
-
Asn
GTT
[ENA]
¡û
>W1610981471
LWCL01000083
Actinomycetota
Mycobacterium kansasii [LWCL]
6186
6261
+
Asn
GTT
[ENA]
¡û
>W1610981522
LWCM01000121
Actinomycetota
Mycobacterium persicum kansasii [LWCM]
27314
27239
-
Asn
GTT
[ENA]
¡û
>W1611035489
LZHY01000029
Actinomycetota
Mycobacterium kubicae szulgai [LZHY]
124581
124656
+
Asn
GTT
[ENA]
¡û
>W1611038501
LZKJ01000193
Actinomycetota
Mycobacterium kyorinense [LZKJ]
51679
51754
+
Asn
GTT
[ENA]
¡û
>W1611038841
LZKQ01000245
Actinomycetota
Mycobacterium asiaticum [LZKQ]
207
132
-
Asn
GTT
[ENA]
¡û
>W1611038911
LZKS01000093
Actinomycetota
Mycobacterium asiaticum [LZKS]
9295
9222
-
Asn
GTT
[ENA]
¡û
>W1611039500
LZLE01000245
Actinomycetota
Mycobacterium sp. 1423905.2 [LZLE]
7799
7874
+
Asn
GTT
[ENA]
¡û
>W1611039563
LZLF01000407
Actinomycetota
Mycobacterium asiaticum [LZLF]
659
586
-
Asn
GTT
[ENA]
¡û
>W1611039753
LZLK01000047
Actinomycetota
Mycobacterium gordonae [LZLK]
65878
65803
-
Asn
GTT
[ENA]
¡û
>W1611039853
LZLM01000027
Actinomycetota
Mycobacterium asiaticum [LZLM]
13060
12987
-
Asn
GTT
[ENA]
¡û
>W1611040041
LZLQ01000015
Actinomycetota
Mycobacterium asiaticum [LZLQ]
188976
188901
-
Asn
GTT
[ENA]
¡û
>W1611040087
LZLR01000020
Actinomycetota
Mycobacterium asiaticum [LZLR]
5369
5444
+
Asn
GTT
[ENA]
¡û
>W1611040175
LZLS01000185
Actinomycetota
Mycobacterium asiaticum [LZLS]
18827
18902
+
Asn
GTT
[ENA]
¡û
>W1611040356
LZLW01000190
Actinomycetota
Mycobacterium kubicae szulgai [LZLW]
4453
4378
-
Asn
GTT
[ENA]
¡û
>W1611040389
LZLX01000161
Actinomycetota
Mycobacterium gordonae [LZLX]
34073
33998
-
Asn
GTT
[ENA]
¡û
>W1611040844
LZMH01000011
Actinomycetota
Mycobacterium asiaticum [LZMH]
16486
16411
-
Asn
GTT
[ENA]
¡û
>W1611052291
MAEM01000555
Actinomycetota
Mycobacterium gordonae [MAEM]
53572
53647
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK