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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237974 (32 seq.)
>WENV180242525
OBDI01277311
[OBDI] metagenome; diffuse fluid
110
34
-
Arg
TCT
[ENA]
¡û
>W141027243
AKYP01000140
Gammaproteobacteria
Coxiella burnetii cb109 [AKYP]
20340
20265
-
Arg
TCT
[ENA]
¡û
>WENV180393516
OBPQ01065430
[OBPQ] marine metagenome; polypropylene bottle
62
138
+
Arg
TCT
[ENA]
¡û
>WENV181415265
OGCL01006903
[OGCL] hot springs metagenome; Hot spring water
2266
2342
+
Arg
TCT
[ENA]
¡û
>C08003044
CP000890
Gammaproteobacteria
Coxiella burnetii RSA 331 [CP000890]
692709
692784
+
Arg
TCT
[Ensembl]
¡û
>W141254762
CBTH010000003
Gammaproteobacteria
Coxiella burnetii Cb185 [CBTH]
275704
275779
+
Arg
TCT
[ENA]
¡û
>WENV170176487
CEOS01083227
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
340
264
-
Arg
TCT
[ENA]
¡û
>WENV170647305
JQIA01019788
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
841
917
+
Arg
TCT
[ENA]
¡û
>W09134585
ACUL01000236
Gammaproteobacteria
Legionella drancourtii LLAP12 [ACUL]
3815
3891
+
Arg
TCT
[ENA]
¡û
>C09103035
CP001020
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 [CP001020]
1535766
1535691
-
Arg
TCT
[Ensembl]
¡û
>W1910728557
MGXO01000015
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_38_33 [MGXO]
11219
11295
+
Arg
TCT
[ENA]
¡û
>W1910728996
MGYA01000091
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_40_19 [MGYA]
4142
4066
-
Arg
TCT
[ENA]
¡û
>W1910729960
MHBC01000011
Gammaproteobacteria
Legionellales bacterium RIFCSPHIGHO2_12_FULL_37_14 [MHBC]
7569
7645
+
Arg
TCT
[ENA]
¡û
>W1911118949
NOLM01000012
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
5142
5217
+
Arg
TCT
[ENA]
¡û
>W1911119334
NOLV01000006
Gammaproteobacteria
Coxiella burnetii California 33 RSA329 [NOLV]
5144
5219
+
Arg
TCT
[ENA]
¡û
>W1810059841
PDLP01000008
Gammaproteobacteria
Coxiella burnetii Leningrad-2 [PDLP]
49651
49576
-
Arg
TCT
[ENA]
¡û
>W1810235793
PPFP01000005
Gammaproteobacteria
Coxiella burnetii Q540 [PPFP]
49252
49177
-
Arg
TCT
[ENA]
¡û
>W1810235860
PPFQ01000011
Gammaproteobacteria
Coxiella burnetii Q532 [PPFQ]
49382
49307
-
Arg
TCT
[ENA]
¡û
>W2010861986
MGXO01000015
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_38_33 [MGXO]
11219
11295
+
Arg
TCT
[ENA]
¡û
>W2011012200
NOLM01000012
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
5142
5217
+
Arg
TCT
[ENA]
¡û
>W2011012585
NOLV01000006
Gammaproteobacteria
Coxiella burnetii California 33 RSA329 [NOLV]
5144
5219
+
Arg
TCT
[ENA]
¡û
>W2011477667
RQJU01000011
Gammaproteobacteria
Coxiella burnetii DSTL_1R [RQJU]
49387
49312
-
Arg
TCT
[ENA]
¡û
>C231000593
AP019759
Gammaproteobacteria
Coxiella burnetii VS42 [AP019759]
611964
612039
+
Arg
TCT
-
¡û
>W1510060756
CCXO01000003
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 Cb196_Saudi_Arabia [CCXO]
955004
954929
-
Arg
TCT
[ENA]
¡û
>W1510061135
CCYB01000047
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCYB]
49550
49475
-
Arg
TCT
[ENA]
¡û
>W2110752457
NIQB01000091
Gammaproteobacteria
Coxiella-like endosymbiont of Rhipicephalus sanguineus CLE-Rs-F23-UF6 [NIQB]
15736
15661
-
Arg
TCT
[ENA]
¡û
>C231511208
CP107247
Gammaproteobacteria
Coxiella burnetii KZQ3 [CP107247]
606473
606548
+
Arg
TCT
-
¡û
>C231511633
CP107268
Gammaproteobacteria
Coxiella burnetii KZQ2 [CP107268]
606431
606506
+
Arg
TCT
-
¡û
>W2110772341
VFIV01000001
Gammaproteobacteria
Coxiella endosymbiont of Ornithodoros amblus AB428 [VFIV]
71590
71515
-
Arg
TCT
[ENA]
¡û
>C231566329
CP115461
Gammaproteobacteria
Coxiella burnetii RMSFV [CP115461]
611972
612047
+
Arg
TCT
-
¡û
>C161059044
CP013667
Gammaproteobacteria
Coxiella burnetii 3262 [CP013667]
1261204
1261279
+
Arg
TCT
-
¡û
>C161071909
CP014354
Gammaproteobacteria
Coxiella burnetii 3345937 [CP014354]
1186532
1186607
+
Arg
TCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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