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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238010 (57 seq.)
>W1711229506
LXYM01000035
Alphaproteobacteria
Sulfitobacter geojensis [LXYM]
36555
36630
+
Lys
TTT
[ENA]
¡û
>WENV180383256
OBOU01016587
[OBOU] marine metagenome; ENV:00002010
201
276
+
Lys
TTT
[ENA]
¢þ
>WENV180392516
OBPO01111064
[OBPO] marine metagenome; seawater
104
29
-
Lys
TTT
[ENA]
¢þ
>WENV180396407
OBPV01002421
[OBPV] marine metagenome; ENVO:00002010
251
326
+
Lys
TTT
[ENA]
¢þ
>WENV180590348
OCOT01001735
[OCOT] marine metagenome; ENVO:00002010
187
112
-
Lys
TTT
[ENA]
¢þ
>WENV180639130
OCRI01141373
[OCRI] marine metagenome; Sterile flask
146
221
+
Lys
TTT
[ENA]
¢þ
>WENV181391479
OFRT01011426
[OFRT] seawater metagenome; seawater
560
635
+
Lys
TTT
[ENA]
¢þ
>WENV182541780
OJAU01001523
[OJAU] seawater metagenome; Sea water
4889
4964
+
Lys
TTT
[ENA]
¢þ
>WENV182542222
OJAV01013774
[OJAV] seawater metagenome; Sea water
632
707
+
Lys
TTT
[ENA]
¢þ
>WENV182543935
OJBD01001516
[OJBD] seawater metagenome; Sea water
2072
1997
-
Lys
TTT
[ENA]
¢þ
>WENV182546171
OJBO01001755
[OJBO] seawater metagenome; Sea water
3047
2972
-
Lys
TTT
[ENA]
¢þ
>WENV182546637
OJBP01000622
[OJBP] seawater metagenome; Sea water
329
254
-
Lys
TTT
[ENA]
¢þ
>WENV182547729
OJBT01001594
[OJBT] seawater metagenome; Sea water
1006
1081
+
Lys
TTT
[ENA]
¢þ
>WENV182549550
OJBY01002153
[OJBY] seawater metagenome; Sea water
3644
3719
+
Lys
TTT
[ENA]
¢þ
>WENV182549919
OJBZ01000400
[OJBZ] seawater metagenome; Sea water
22828
22903
+
Lys
TTT
[ENA]
¢þ
>WENV182560863
OJDV01000083
[OJDV] seawater metagenome; Sea water
6649
6724
+
Lys
TTT
[ENA]
¢þ
>WENV182562587
OJDZ01014978
[OJDZ] seawater metagenome; Sea water
541
616
+
Lys
TTT
[ENA]
¢þ
>WENV182566828
OJEM01009205
[OJEM] seawater metagenome; Sea water
947
872
-
Lys
TTT
[ENA]
¢þ
>WENV182567155
OJEN01006171
[OJEN] seawater metagenome; Sea water
760
685
-
Lys
TTT
[ENA]
¢þ
>WENV182567528
OJEO01004000
[OJEO] seawater metagenome; Sea water
885
960
+
Lys
TTT
[ENA]
¢þ
>WENV182568933
OJEX01004289
[OJEX] seawater metagenome; Sea water
1222
1147
-
Lys
TTT
[ENA]
¢þ
>WENV182576283
OJFX01008472
[OJFX] seawater metagenome; Sea water
995
1070
+
Lys
TTT
[ENA]
¢þ
>WENV182581687
OJGX01041097
[OJGX] seawater metagenome; Sea water
370
295
-
Lys
TTT
[ENA]
¢þ
>W141290223
JASE01000005
Alphaproteobacteria
Sulfitobacter geojensis MM-124 [JASE]
124032
123957
-
Lys
TTT
[ENA]
¡û
>WENV183057154
OLHK01006037
[OLHK] seawater metagenome; Sea water
1507
1582
+
Lys
TTT
[ENA]
¢þ
>WENV183057562
OLHL01009940
[OLHL] seawater metagenome; Sea water
432
357
-
Lys
TTT
[ENA]
¢þ
>WENV183618988
OOFP01011408
[OOFP] marine metagenome; seawater
299
224
-
Lys
TTT
[ENA]
¢þ
>WENV183623319
OOFX01073849
[OOFX] marine metagenome; sea ice
155
230
+
Lys
TTT
[ENA]
¢þ
>WENV183748011
PPFU01007012
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2726
2801
+
Lys
TTT
[ENA]
¢þ
>WENV170015552
AZIH01004579
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
252
177
-
Lys
TTT
[ENA]
¢þ
>WENV170016464
AZIK01006775
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
1068
1143
+
Lys
TTT
[ENA]
¢þ
>WENV170238075
CEQM01114681
[CEQM] marine metagenome genome assembly TARA_078_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1662
1587
-
Lys
TTT
[ENA]
¢þ
>WENV170244065
CEQO01286910
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1304
1229
-
Lys
TTT
[ENA]
¢þ
>WENV170307598
CESJ01262551
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
283
358
+
Lys
TTT
[ENA]
¢þ
>WENV170567815
FLMP01006287
[FLMP] seawater metagenome; seawater
306
231
-
Lys
TTT
[ENA]
¢þ
>WENV170646474
JQGR01011346
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
67
142
+
Lys
TTT
[ENA]
¢þ
>WENV170672498
LAZR01000232
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
42899
42974
+
Lys
TTT
[ENA]
¢þ
>WENV170672757
LAZR01001545
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
7514
7589
+
Lys
TTT
[ENA]
¢þ
>WENV170782395
MAAC01009745
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
101090
101015
-
Lys
TTT
[ENA]
¢þ
>WENV170790559
MDSV01068242
[MDSV] marine metagenome; seawater
1338
1263
-
Lys
TTT
[ENA]
¢þ
>WENV170812339
MDSW01181795
[MDSW] marine metagenome; seawater
4015
4090
+
Lys
TTT
[ENA]
¢þ
>WENV170826977
MDSY01120612
[MDSY] marine metagenome; seawater
6554
6629
+
Lys
TTT
[ENA]
¢þ
>C181123292
CP025803
Alphaproteobacteria
Sulfitobacter sp. SK011 [CP025803]
304195
304270
+
Lys
TTT
-
¡û
>C181123346
CP025804
Alphaproteobacteria
Sulfitobacter sp. SK012 [CP025804]
4613676
4613601
-
Lys
TTT
-
¡û
>C181123436
CP025815
Alphaproteobacteria
Sulfitobacter sp. JL08 [CP025815]
4079592
4079667
+
Lys
TTT
-
¡û
>C191182614
CP040753
Alphaproteobacteria
Sulfitobacter sp. BSw21498 [CP040753]
2407443
2407368
-
Lys
TTT
-
¡û
>W09112278
ABXS01000045
Alphaproteobacteria
Roseobacter sp. GAI101 [ABXS]
87804
87729
-
Lys
TTT
[ENA]
¡û
>W1911081226
NMZM01000006
Alphaproteobacteria
Oceaniglobus indicus 1-19b [NMZM]
138329
138254
-
Lys
TTT
[ENA]
¡û
>W1911544889
OUMZ01000006
Alphaproteobacteria
Roseovarius sp. EL26 [OUMZ]
27793
27718
-
Lys
TTT
[ENA]
¡û
>W1810471796
QAGK01000008
Alphaproteobacteria
Oceaniglobus ichthyenteri YLY08 [QAGK]
179385
179460
+
Lys
TTT
[ENA]
¡û
>W1810591656
QFVT01000005
Alphaproteobacteria
Litorivita pollutaquae FSX-11 [QFVT]
174278
174353
+
Lys
TTT
[ENA]
¡û
>C151092045
CP012160
Alphaproteobacteria
Octadecabacter temperatus SB1 [CP012160]
3024348
3024273
-
Lys
TTT
-
¡û
>W1611013376
LXYM01000035
Alphaproteobacteria
Sulfitobacter geojensis [LXYM]
36555
36630
+
Lys
TTT
[ENA]
¡û
>W1710524947
FNJD01000001
Alphaproteobacteria
Sulfitobacter litoralis [FNJD]
302365
302290
-
Lys
TTT
[ENA]
¡û
>W1710565167
FORA01000005
Alphaproteobacteria
Jannaschia pohangensis [FORA]
62973
63048
+
Lys
TTT
[ENA]
¡û
>W1710576950
FPAJ01000005
Alphaproteobacteria
Sulfitobacter marinus [FPAJ]
113999
113924
-
Lys
TTT
[ENA]
¡û
>W1710594951
FSRP01000002
Alphaproteobacteria
Octadecabacter temperatus [FSRP]
523874
523949
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK