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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238042 (91 seq.)
>W1711113976
LTYU01000001
Gammaproteobacteria
Aliivibrio fischeri [LTYU]
140429
140504
+
Asn
GTT
[ENA]
¡û
>W1711114015
LTYV01000002
Gammaproteobacteria
Aliivibrio fischeri [LTYV]
216078
216153
+
Asn
GTT
[ENA]
¡û
>W1711114066
LTYW01000023
Gammaproteobacteria
Aliivibrio fischeri [LTYW]
200230
200155
-
Asn
GTT
[ENA]
¡û
>W1711114100
LTYX01000013
Gammaproteobacteria
Aliivibrio fischeri [LTYX]
736465
736540
+
Asn
GTT
[ENA]
¡û
>W1711114157
LTYY01000045
Gammaproteobacteria
Aliivibrio fischeri [LTYY]
140422
140497
+
Asn
GTT
[ENA]
¡û
>W1711114168
LTYZ01000001
Gammaproteobacteria
Aliivibrio fischeri [LTYZ]
146732
146807
+
Asn
GTT
[ENA]
¡û
>W1711114215
LTZA01000013
Gammaproteobacteria
Aliivibrio fischeri [LTZA]
578382
578457
+
Asn
GTT
[ENA]
¡û
>W1711114266
LTZB01000034
Gammaproteobacteria
Aliivibrio fischeri [LTZB]
135995
136070
+
Asn
GTT
[ENA]
¡û
>W1711114277
LTZC01000001
Gammaproteobacteria
Aliivibrio fischeri [LTZC]
140422
140497
+
Asn
GTT
[ENA]
¡û
>W1711114334
LTZD01000015
Gammaproteobacteria
Aliivibrio fischeri [LTZD]
678599
678674
+
Asn
GTT
[ENA]
¡û
>W1711114378
LTZE01000014
Gammaproteobacteria
Aliivibrio fischeri [LTZE]
205346
205271
-
Asn
GTT
[ENA]
¡û
>W1711114430
LTZF01000019
Gammaproteobacteria
Aliivibrio fischeri [LTZF]
745160
745235
+
Asn
GTT
[ENA]
¡û
>W1711303169
MAJN01000023
Gammaproteobacteria
Aliivibrio fischeri [MAJN]
719434
719509
+
Asn
GTT
[ENA]
¡û
>W1711303216
MAJO01000007
Gammaproteobacteria
Aliivibrio fischeri [MAJO]
3268
3193
-
Asn
GTT
[ENA]
¡û
>W1711303291
MAJP01000001
Gammaproteobacteria
Aliivibrio fischeri [MAJP]
3307
3232
-
Asn
GTT
[ENA]
¡û
>W1711303382
MAJQ01000002
Gammaproteobacteria
Aliivibrio fischeri [MAJQ]
3290
3215
-
Asn
GTT
[ENA]
¡û
>W1711303505
MAJR01000118
Gammaproteobacteria
Aliivibrio fischeri [MAJR]
369123
369198
+
Asn
GTT
[ENA]
¡û
>W1711303907
MAJW01000135
Gammaproteobacteria
Aliivibrio fischeri [MAJW]
3170
3095
-
Asn
GTT
[ENA]
¡û
>W1711303962
MAJX01000039
Gammaproteobacteria
Aliivibrio fischeri [MAJX]
185977
186052
+
Asn
GTT
[ENA]
¡û
>W1711304012
MAJY01000007
Gammaproteobacteria
Aliivibrio fischeri [MAJY]
3290
3215
-
Asn
GTT
[ENA]
¡û
>W1711341972
MCGJ01000076
Gammaproteobacteria
Aliivibrio fischeri [MCGJ]
315138
315213
+
Asn
GTT
[ENA]
¡û
>W1711342001
MCGK01000002
Gammaproteobacteria
Aliivibrio fischeri [MCGK]
279860
279935
+
Asn
GTT
[ENA]
¡û
>C171118330
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
421466
421541
+
Asn
GTT
-
¡û
>C171118331
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
421589
421664
+
Asn
GTT
-
¡û
>C171118332
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
421712
421787
+
Asn
GTT
-
¡û
>C171118333
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
421823
421898
+
Asn
GTT
-
¡û
>C026403
CP000020
Gammaproteobacteria
Aliivibrio fischeri ES114 [CP000020, CP000021]
1031005
1030930
-
Asn
GTT
[Ensembl]
¡û
>w014979
AAOU01000016
Gammaproteobacteria
Photobacterium sp. SKA34 [AAOU]
31589
31666
+
Asn
GTT
[ENA]
¡û
>w014974
AAOU01000016
Gammaproteobacteria
Photobacterium sp. SKA34 [AAOU]
30646
30723
+
Asn
GTT
[ENA]
¡û
>w014971
AAOU01000016
Gammaproteobacteria
Photobacterium sp. SKA34 [AAOU]
30307
30384
+
Asn
GTT
[ENA]
¡û
>WENV180405078
OBSA01161869
[OBSA] human gut metagenome; ENVO:feces
151
76
-
Asn
GTT
[ENA]
¢þ
>WENV180561783
OCKZ01006553
[OCKZ] human gut metagenome; human gut
191
266
+
Asn
GTT
[ENA]
¢þ
>WENV180565305
OCLF01134374
[OCLF] human gut metagenome; human gut
151
76
-
Asn
GTT
[ENA]
¢þ
>C08011236
CP001139
Gammaproteobacteria
Aliivibrio fischeri MJ11 [CP001133, CP001139]
1022528
1022456
-
Asn
GTT
[Ensembl]
¡û
>WENV183640691
OQVL01008792
[OQVL] human gut metagenome; human gut
2188
2113
-
Asn
GTT
[ENA]
¢þ
>WENV183643686
OQVO01054016
[OQVO] human gut metagenome; human gut
528
453
-
Asn
GTT
[ENA]
¢þ
>WENV183645204
OQVQ01001937
[OQVQ] human gut metagenome; human gut
7746
7821
+
Asn
GTT
[ENA]
¢þ
>WENV183645205
OQVQ01001937
[OQVQ] human gut metagenome; human gut
7845
7920
+
Asn
GTT
[ENA]
¢þ
>WENV183647933
OQVS01004475
[OQVS] human gut metagenome; human gut
7849
7924
+
Asn
GTT
[ENA]
¢þ
>WENV183648047
OQVS01006043
[OQVS] human gut metagenome; human gut
78
153
+
Asn
GTT
[ENA]
¢þ
>WENV183651358
OQVT01134924
[OQVT] human gut metagenome; human gut
520
445
-
Asn
GTT
[ENA]
¢þ
>WENV183653926
OQWA01003003
[OQWA] human gut metagenome; human gut
4685
4760
+
Asn
GTT
[ENA]
¢þ
>WENV183653927
OQWA01003003
[OQWA] human gut metagenome; human gut
4784
4859
+
Asn
GTT
[ENA]
¢þ
>W09107295
ABIH01000002
Gammaproteobacteria
Aliivibrio fischeri MJ11 [ABIH]
404600
404675
+
Asn
GTT
[ENA]
¡û
>W1810406863
PYMJ01000002
Gammaproteobacteria
Photobacterium frigidiphilum JCM 12947 [PYMJ]
301570
301645
+
Asn
GTT
[ENA]
¡û
>W1810411874
PYNU01000003
Gammaproteobacteria
Photobacterium sp. GB-210 [PYNU]
163084
163009
-
Asn
GTT
[ENA]
¡û
>W1810411882
PYNU01000003
Gammaproteobacteria
Photobacterium sp. GB-210 [PYNU]
161798
161723
-
Asn
GTT
[ENA]
¡û
>W1810412005
PYNV01000004
Gammaproteobacteria
Photobacterium sp. GB-72 [PYNV]
173062
172987
-
Asn
GTT
[ENA]
¡û
>W1810412134
PYNW01000006
Gammaproteobacteria
Photobacterium sp. GB-56 [PYNW]
83229
83304
+
Asn
GTT
[ENA]
¡û
>W1810412142
PYNW01000006
Gammaproteobacteria
Photobacterium sp. GB-56 [PYNW]
84513
84588
+
Asn
GTT
[ENA]
¡û
>W1810412281
PYNX01000005
Gammaproteobacteria
Photobacterium sp. GB-50 [PYNX]
82420
82495
+
Asn
GTT
[ENA]
¡û
>W1810412289
PYNX01000005
Gammaproteobacteria
Photobacterium sp. GB-50 [PYNX]
83743
83818
+
Asn
GTT
[ENA]
¡û
>W1810412411
PYNY01000005
Gammaproteobacteria
Photobacterium sp. GB-36 [PYNY]
82722
82797
+
Asn
GTT
[ENA]
¡û
>W1810412419
PYNY01000005
Gammaproteobacteria
Photobacterium sp. GB-36 [PYNY]
84005
84080
+
Asn
GTT
[ENA]
¡û
>W1810412563
PYNZ01000005
Gammaproteobacteria
Photobacterium sp. GB-27 [PYNZ]
82720
82795
+
Asn
GTT
[ENA]
¡û
>W1810412571
PYNZ01000005
Gammaproteobacteria
Photobacterium sp. GB-27 [PYNZ]
84004
84079
+
Asn
GTT
[ENA]
¡û
>W1810412703
PYOA01000004
Gammaproteobacteria
Photobacterium sp. GB-3 [PYOA]
162793
162718
-
Asn
GTT
[ENA]
¡û
>W1810412711
PYOA01000004
Gammaproteobacteria
Photobacterium sp. GB-3 [PYOA]
161507
161432
-
Asn
GTT
[ENA]
¡û
>W1810412839
PYOB01000006
Gammaproteobacteria
Photobacterium sp. GB-1 [PYOB]
162986
162911
-
Asn
GTT
[ENA]
¡û
>W1810412846
PYOB01000006
Gammaproteobacteria
Photobacterium sp. GB-1 [PYOB]
161702
161627
-
Asn
GTT
[ENA]
¡û
>ENV09002376
ADGC01000217
Wallaby gut metagenome MeugComb_C1
4207
4282
+
Asn
GTT
[ENA]
¡û
>ENV09002377
ADGC01000217
Wallaby gut metagenome MeugComb_C1
4311
4386
+
Asn
GTT
[ENA]
¡û
>ENV09002378
ADGC01000217
Wallaby gut metagenome MeugComb_C1
4413
4488
+
Asn
GTT
[ENA]
¡û
>ENV09002379
ADGC01000217
Wallaby gut metagenome MeugComb_C1
4516
4591
+
Asn
GTT
[ENA]
¡û
>W1510646315
CVOI01000002
Gammaproteobacteria
Aliivibrio fischeri 5LC [CVOI]
200735
200660
-
Asn
GTT
[ENA]
¡û
>W1511480336
JWIZ01000024
Gammaproteobacteria
Muribacter muris Ackerman80-443D [JWIZ]
36822
36897
+
Asn
GTT
[ENA]
¡û
>W1511624191
LCYF01000006
Gammaproteobacteria
Aliivibrio fischeri VCW2E2 [LCYF]
198408
198333
-
Asn
GTT
[ENA]
¡û
>W1610048546
BBEE01000014
Gammaproteobacteria
Aliivibrio fischeri JCM 18803 [BBEE]
113
38
-
Asn
GTT
[ENA]
¡û
>W121032926
AHIH01000004
Gammaproteobacteria
Aliivibrio fischeri SR5 [AHIH]
40903
40828
-
Asn
GTT
[ENA]
¡û
>W121071923
AJYI01000018
Gammaproteobacteria
Aliivibrio fischeri ZF-211 [AJYI]
3197
3122
-
Asn
GTT
[ENA]
¡û
>W1610926673
LTYU01000001
Gammaproteobacteria
Aliivibrio fischeri [LTYU]
140429
140504
+
Asn
GTT
[ENA]
¡û
>W1610926712
LTYV01000002
Gammaproteobacteria
Aliivibrio fischeri [LTYV]
216078
216153
+
Asn
GTT
[ENA]
¡û
>W1610926763
LTYW01000023
Gammaproteobacteria
Aliivibrio fischeri [LTYW]
200230
200155
-
Asn
GTT
[ENA]
¡û
>W1610926797
LTYX01000013
Gammaproteobacteria
Aliivibrio fischeri [LTYX]
736465
736540
+
Asn
GTT
[ENA]
¡û
>W1610926854
LTYY01000045
Gammaproteobacteria
Aliivibrio fischeri [LTYY]
140422
140497
+
Asn
GTT
[ENA]
¡û
>W1610926865
LTYZ01000001
Gammaproteobacteria
Aliivibrio fischeri [LTYZ]
146732
146807
+
Asn
GTT
[ENA]
¡û
>W1610926912
LTZA01000013
Gammaproteobacteria
Aliivibrio fischeri [LTZA]
578382
578457
+
Asn
GTT
[ENA]
¡û
>W1610926963
LTZB01000034
Gammaproteobacteria
Aliivibrio fischeri [LTZB]
135995
136070
+
Asn
GTT
[ENA]
¡û
>W1610926974
LTZC01000001
Gammaproteobacteria
Aliivibrio fischeri [LTZC]
140422
140497
+
Asn
GTT
[ENA]
¡û
>W1610927031
LTZD01000015
Gammaproteobacteria
Aliivibrio fischeri [LTZD]
678599
678674
+
Asn
GTT
[ENA]
¡û
>W1610927075
LTZE01000014
Gammaproteobacteria
Aliivibrio fischeri [LTZE]
205346
205271
-
Asn
GTT
[ENA]
¡û
>W1610927127
LTZF01000019
Gammaproteobacteria
Aliivibrio fischeri [LTZF]
745160
745235
+
Asn
GTT
[ENA]
¡û
>W1611053369
MAJN01000023
Gammaproteobacteria
Aliivibrio fischeri [MAJN]
719434
719509
+
Asn
GTT
[ENA]
¡û
>W1611053416
MAJO01000007
Gammaproteobacteria
Aliivibrio fischeri [MAJO]
3268
3193
-
Asn
GTT
[ENA]
¡û
>W1611053491
MAJP01000001
Gammaproteobacteria
Aliivibrio fischeri [MAJP]
3307
3232
-
Asn
GTT
[ENA]
¡û
>W1611053582
MAJQ01000002
Gammaproteobacteria
Aliivibrio fischeri [MAJQ]
3290
3215
-
Asn
GTT
[ENA]
¡û
>W1611053705
MAJR01000118
Gammaproteobacteria
Aliivibrio fischeri [MAJR]
369123
369198
+
Asn
GTT
[ENA]
¡û
>W1611054107
MAJW01000135
Gammaproteobacteria
Aliivibrio fischeri [MAJW]
3170
3095
-
Asn
GTT
[ENA]
¡û
>W1611054162
MAJX01000039
Gammaproteobacteria
Aliivibrio fischeri [MAJX]
185977
186052
+
Asn
GTT
[ENA]
¡û
>W1611054212
MAJY01000007
Gammaproteobacteria
Aliivibrio fischeri [MAJY]
3290
3215
-
Asn
GTT
[ENA]
¡û
>W1710045056
BBEE01000014
Gammaproteobacteria
Aliivibrio fischeri JCM 18803 [BBEE]
113
38
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK