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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23807 (39 seq.)
>W1711009527
LQQT01000016
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
151288
151377
+
Ser
CGA
[ENA]
¡û
>W1711179458
LWHQ01000107
Alphaproteobacteria
Methylobacterium platani [LWHQ]
97
186
+
Ser
CGA
[ENA]
¡û
>W131163768
ARAA01000030
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
267508
267597
+
Ser
CGA
[ENA]
¡û
>C171072657
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
872731
872820
+
Ser
CGA
-
¡û
>w026466
ABAY01000035
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
20227
20318
+
Ser
CGA
[ENA]
¡û
>W08006150
ABIP01000015
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
37902
37816
-
Ser
CGA
[ENA]
¡û
>C08006463
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
3336301
3336215
-
Ser
CGA
[Ensembl]
¡û
>WENV183726171
PJQF01100926
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
269
358
+
Ser
CGA
[ENA]
¢þ
>WENV170711478
LNFM01005442
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2584
2673
+
Ser
CGA
[ENA]
¢þ
>C181180153
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
1753270
1753181
-
Ser
CGA
-
¡û
>C181180219
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
5290912
5290823
-
Ser
CGA
-
¡û
>C09107868
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
5169355
5169266
-
Ser
CGA
[Ensembl]
¡û
>W1911708562
QOWC01000052
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
27470
27381
-
Ser
CGA
[ENA]
¡û
>W1810079897
PELK01001545
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
321
232
-
Ser
CGA
[ENA]
¡û
>C151094740
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
2517504
2517593
+
Ser
CGA
-
¡û
>W1510741137
CYHC01000009
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
150368
150457
+
Ser
CGA
[ENA]
¡û
>W1511400886
JTHF01000066
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
3009
3098
+
Ser
CGA
[ENA]
¡û
>W1511400960
JTHG01000154
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
24119
24030
-
Ser
CGA
[ENA]
¡û
>W1511507917
JXOD01000456
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
1583
1494
-
Ser
CGA
[ENA]
¡û
>W1511563251
LABX01000137
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
17964
18053
+
Ser
CGA
[ENA]
¡û
>W1511563330
LABY01000237
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
1189
1100
-
Ser
CGA
[ENA]
¡û
>W1511563388
LABZ01000227
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
3908
3997
+
Ser
CGA
[ENA]
¡û
>C161001138
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
1397895
1397984
+
Ser
CGA
[Ensembl]
¡û
>W121110777
ALIQ01000046
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
5496
5407
-
Ser
CGA
[ENA]
¡û
>W1610047400
BBDG01000366
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
76
165
+
Ser
CGA
[ENA]
¡û
>W1610590453
LDRL01000168
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
3880
3969
+
Ser
CGA
[ENA]
¡û
>W1610590528
LDRM01000194
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
6311
6222
-
Ser
CGA
[ENA]
¡û
>W1610590590
LDRN01000154
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
27442
27531
+
Ser
CGA
[ENA]
¡û
>W1610631771
LIOL01000009
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
150368
150457
+
Ser
CGA
[ENA]
¡û
>W1610858047
LQQT01000016
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
151288
151377
+
Ser
CGA
[ENA]
¡û
>W1610987359
LWHQ01000107
Alphaproteobacteria
Methylobacterium platani [LWHQ]
97
186
+
Ser
CGA
[ENA]
¡û
>W1710044005
BBDG01000366
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
76
165
+
Ser
CGA
[ENA]
¡û
>W1710548839
FOEB01000016
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
78569
78658
+
Ser
CGA
[ENA]
¡û
>W1710560679
FONO01000012
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
155775
155686
-
Ser
CGA
[ENA]
¡û
>W1710579052
FPCB01000013
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
208482
208571
+
Ser
CGA
[ENA]
¡û
>W1710709733
LDRL01000168
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
3880
3969
+
Ser
CGA
[ENA]
¡û
>W1710709808
LDRM01000194
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
6311
6222
-
Ser
CGA
[ENA]
¡û
>W1710709870
LDRN01000154
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
27442
27531
+
Ser
CGA
[ENA]
¡û
>W1710764656
LIOL01000009
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
150368
150457
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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