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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238112 (108 seq.)
>W1710810009
LKGR01000010
Bacillota
Enterococcus faecalis [LKGR]
163943
163868
-
Asn
GTT
[ENA]
¡û
>W1710810010
LKGR01000010
Bacillota
Enterococcus faecalis [LKGR]
163868
163793
-
Asn
GTT
[ENA]
¡û
>W1711010507
LQRN01000002
Bacillota
Streptococcus parauberis [LQRN]
21528
21601
+
Asn
GTT
[ENA]
¡û
>W1711018266
LQWV01000012
Bacillota
Streptococcus gordonii [LQWV]
12549
12476
-
Asn
GTT
[ENA]
¡û
>W1711018268
LQWV01000012
Bacillota
Streptococcus gordonii [LQWV]
941
868
-
Asn
GTT
[ENA]
¡û
>W1711018285
LQWV01000040
Bacillota
Streptococcus gordonii [LQWV]
228580
228507
-
Asn
GTT
[ENA]
¡û
>W1711019290
LQXU01000070
Bacillota
Streptococcus constellatus [LQXU]
14146
14073
-
Asn
GTT
[ENA]
¡û
>W1711019303
LQXU01000088
Bacillota
Streptococcus constellatus [LQXU]
42425
42349
-
Asn
GTT
[ENA]
¡û
>W1711032409
LRHB01000017
Bacillota
Streptococcus pyogenes [LRHB]
1003
1078
+
Asn
GTT
[ENA]
¡û
>W1711095685
LTHB01000216
Bacillota
Enterococcus sp. HMSC058D07 [LTHB]
190
115
-
Asn
GTT
[ENA]
¡û
>W1711098062
LTJG01000053
Bacillota
Enterococcus sp. HMSC069A01 [LTJG]
7331
7406
+
Asn
GTT
[ENA]
¡û
>W1711335960
MBRG01000143
Bacillota
Enterococcus faecium [MBRG]
62099
62024
-
Asn
GTT
[ENA]
¡û
>W1711387583
MEGW01000018
Bacillota
Enterococcus faecalis [MEGW]
3287
3362
+
Asn
GTT
[ENA]
¡û
>W1711387593
MEGW01000041
Bacillota
Enterococcus faecalis [MEGW]
3287
3362
+
Asn
GTT
[ENA]
¡û
>W1711459823
MJDV01000003
Bacillota
Enterococcus hirae [MJDV]
373111
373036
-
Asn
GTT
[ENA]
¡û
>W1711459824
MJDV01000003
Bacillota
Enterococcus hirae [MJDV]
371697
371622
-
Asn
GTT
[ENA]
¡û
>W1711459829
MJDV01000007
Bacillota
Enterococcus hirae [MJDV]
180090
180015
-
Asn
GTT
[ENA]
¡û
>W1711460480
MJEG01000012
Bacillota
Enterococcus casseliflavus [MJEG]
148571
148496
-
Asn
GTT
[ENA]
¡û
>W1711460493
MJEG01000016
Bacillota
Enterococcus casseliflavus [MJEG]
96177
96102
-
Asn
GTT
[ENA]
¡û
>W1711460494
MJEG01000016
Bacillota
Enterococcus casseliflavus [MJEG]
93092
93017
-
Asn
GTT
[ENA]
¡û
>W1711571203
MNAC01000004
Bacillota
Streptococcus iniae [MNAC]
82033
81958
-
Asn
GTT
[ENA]
¡û
>W1711643214
MPZY01000044
Bacillota
Enterococcus faecium [MPZY]
19656
19581
-
Asn
GTT
[ENA]
¡û
>W1711643215
MPZY01000045
Bacillota
Enterococcus faecium [MPZY]
21152
21077
-
Asn
GTT
[ENA]
¡û
>W1711643237
MPZY01000164
Bacillota
Enterococcus faecium [MPZY]
408
333
-
Asn
GTT
[ENA]
¡û
>W1711658982
MQRF01000008
Bacillota
Enterococcus faecium [MQRF]
437
362
-
Asn
GTT
[ENA]
¡û
>W1711659017
MQRF01000175
Bacillota
Enterococcus faecium [MQRF]
1796
1871
+
Asn
GTT
[ENA]
¡û
>W1711693864
MSHQ02000010
Bacillota
Enterococcus faecalis [MSHQ]
73
148
+
Asn
GTT
[ENA]
¡û
>W1711693879
MSHQ02000029
Bacillota
Enterococcus faecalis [MSHQ]
279
204
-
Asn
GTT
[ENA]
¡û
>W1712068462
NGLR01000001
Bacillota
Enterococcus faecium [NGLR]
2162619
2162544
-
Asn
GTT
[ENA]
¡û
>W1712068463
NGLR01000001
Bacillota
Enterococcus faecium [NGLR]
2159922
2159847
-
Asn
GTT
[ENA]
¡û
>W1712068467
NGLR01000001
Bacillota
Enterococcus faecium [NGLR]
1860021
1859946
-
Asn
GTT
[ENA]
¡û
>W1712068877
NGLZ01000001
Bacillota
Enterococcus sp. 12C11_DIV0727 [NGLZ]
608326
608401
+
Asn
GTT
[ENA]
¡û
>W1712069107
NGMD01000001
Bacillota
Enterococcus faecium [NGMD]
2276482
2276407
-
Asn
GTT
[ENA]
¡û
>W1712069168
NGMD01000002
Bacillota
Enterococcus faecium [NGMD]
266380
266305
-
Asn
GTT
[ENA]
¡û
>W1712069511
NGMK01000001
Bacillota
Enterococcus faecium [NGMK]
1822209
1822134
-
Asn
GTT
[ENA]
¡û
>W1712069512
NGMK01000001
Bacillota
Enterococcus faecium [NGMK]
1819524
1819449
-
Asn
GTT
[ENA]
¡û
>W1712069515
NGMK01000001
Bacillota
Enterococcus faecium [NGMK]
1527126
1527051
-
Asn
GTT
[ENA]
¡û
>W1712069980
NGMT01000001
Bacillota
Enterococcus sp. 6C8_DIV0013 [NGMT]
951608
951681
+
Asn
GTT
[ENA]
¡û
>W1712069986
NGMT01000002
Bacillota
Enterococcus sp. 6C8_DIV0013 [NGMT]
920386
920459
+
Asn
GTT
[ENA]
¡û
>W1712069993
NGMT01000002
Bacillota
Enterococcus sp. 6C8_DIV0013 [NGMT]
927148
927221
+
Asn
GTT
[ENA]
¡û
>W1712070000
NGMU01000001
Bacillota
Enterococcus faecalis [NGMU]
6450
6525
+
Asn
GTT
[ENA]
¡û
>W1712070019
NGMU01000001
Bacillota
Enterococcus faecalis [NGMU]
1568538
1568463
-
Asn
GTT
[ENA]
¡û
>W1712070127
NGMW01000001
Bacillota
Enterococcus faecalis [NGMW]
629490
629565
+
Asn
GTT
[ENA]
¡û
>W1712070152
NGMW01000001
Bacillota
Enterococcus faecalis [NGMW]
2056748
2056673
-
Asn
GTT
[ENA]
¡û
>W1712109849
NJFO01000003
Bacillota
Enterococcus faecalis [NJFO]
91349
91424
+
Asn
GTT
[ENA]
¡û
>W1712109895
NJFO01000003
Bacillota
Enterococcus faecalis [NJFO]
1604021
1603946
-
Asn
GTT
[ENA]
¡û
>C171015358
CP012047
Bacillota
Tetragenococcus halophilus MJ4 [CP012047]
629581
629656
+
Asn
GTT
-
¡û
>C171015360
CP012047
Bacillota
Tetragenococcus halophilus MJ4 [CP012047]
659908
659983
+
Asn
GTT
-
¡û
>C171015402
CP012047
Bacillota
Tetragenococcus halophilus MJ4 [CP012047]
1682846
1682771
-
Asn
GTT
-
¡û
>C171127081
CP021972
Bacillota
Streptococcus equi subsp. equi ATCC 39506 [CP021972]
2268277
2268202
-
Asn
GTT
-
¡û
>W10101147
ACJQ01000080
Bacillota
Enterococcus faecium C68 [ACJQ]
30868
30793
-
Asn
GTT
[ENA]
¡û
>W10124466
AEBE01000156
Bacillota
Enterococcus faecalis TX0630 [AEBE]
634
559
-
Asn
GTT
[ENA]
¡û
>W10125369
AEBY01000014
Bacillota
Enterococcus faecalis TX0109 [AEBY]
34
109
+
Asn
GTT
[ENA]
¡û
>WENV11101482
AGFS01033648
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
199
274
+
Asn
GTT
[ENA]
¡û
>W11101303
ACJQ01000080
Bacillota
Enterococcus faecium C68 [ACJQ]
30868
30793
-
Asn
GTT
[ENA]
¡û
>W11131353
AEBE01000156
Bacillota
Enterococcus faecalis TX0630 [AEBE]
634
559
-
Asn
GTT
[ENA]
¡û
>W11132256
AEBY01000014
Bacillota
Enterococcus faecalis TX0109 [AEBY]
34
109
+
Asn
GTT
[ENA]
¡û
>W11152374
AEXY01000003
Bacillota
Streptococcus sanguinis SK150 [AEXY]
95936
95860
-
Asn
GTT
[ENA]
¡û
>W11156250
AFAZ01000008
Bacillota
Streptococcus sanguinis SK1 [AFAZ]
21543
21619
+
Asn
GTT
[ENA]
¡û
>W11171750
AFQU01000001
Bacillota
Streptococcus sp. oral taxon 056 oral taxon 056 str. F0418 [AFQU]
1167456
1167383
-
Asn
GTT
[ENA]
¡û
>W11171772
AFQU01000001
Bacillota
Streptococcus sp. oral taxon 056 oral taxon 056 str. F0418 [AFQU]
745296
745223
-
Asn
GTT
[ENA]
¡û
>W11182263
AGKZ01000057
Bacillota
Streptococcus mutans TCI-169 [AGKZ]
89886
89811
-
Asn
GTT
[ENA]
¡û
>W11182268
AGKZ01000059
Bacillota
Streptococcus mutans TCI-169 [AGKZ]
98337
98262
-
Asn
GTT
[ENA]
¡û
>W11182734
AGLM01000177
Bacillota
Streptococcus mutans TCI-212 [AGLM]
24183
24108
-
Asn
GTT
[ENA]
¡û
>W11182739
AGLM01000193
Bacillota
Streptococcus mutans TCI-212 [AGLM]
18733
18658
-
Asn
GTT
[ENA]
¡û
>W11183173
AGLY01000061
Bacillota
Streptococcus mutans TCI-243 [AGLY]
89877
89802
-
Asn
GTT
[ENA]
¡û
>W11183178
AGLY01000066
Bacillota
Streptococcus mutans TCI-243 [AGLY]
26373
26298
-
Asn
GTT
[ENA]
¡û
>W11183248
AGMA01000094
Bacillota
Streptococcus mutans TCI-249 [AGMA]
19125
19050
-
Asn
GTT
[ENA]
¡û
>W11183253
AGMA01000097
Bacillota
Streptococcus mutans TCI-249 [AGMA]
101556
101481
-
Asn
GTT
[ENA]
¡û
>W11183321
AGMC01000131
Bacillota
Streptococcus mutans TCI-260 [AGMC]
53363
53288
-
Asn
GTT
[ENA]
¡û
>W11183326
AGMC01000141
Bacillota
Streptococcus mutans TCI-260 [AGMC]
26373
26298
-
Asn
GTT
[ENA]
¡û
>W11183821
AGMQ01000056
Bacillota
Streptococcus mutans TCI-51 [AGMQ]
89884
89809
-
Asn
GTT
[ENA]
¡û
>W11183826
AGMQ01000057
Bacillota
Streptococcus mutans TCI-51 [AGMQ]
147700
147625
-
Asn
GTT
[ENA]
¡û
>W11184074
AGMX01000119
Bacillota
Streptococcus mutans TCI-86 [AGMX]
78369
78294
-
Asn
GTT
[ENA]
¡û
>W11184079
AGMX01000127
Bacillota
Streptococcus mutans TCI-86 [AGMX]
44177
44102
-
Asn
GTT
[ENA]
¡û
>C121017501
FR824043
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 [FR824043]
2352827
2352754
-
Asn
GTT
[Ensembl]
¡û
>C161023188
CP010061
Bacillota
Enterococcus cecorum SA2 [CP010061]
382402
382477
+
Asn
GTT
-
¡û
>C161023200
CP010061
Bacillota
Enterococcus cecorum SA2 [CP010061]
2166646
2166721
+
Asn
GTT
-
¡û
>C161045880
CP012805
Bacillota
Streptococcus anginosus J4211 [CP012805]
308393
308466
+
Asn
GTT
[Ensembl]
¡û
>C161045889
CP012805
Bacillota
Streptococcus anginosus J4211 [CP012805]
1919121
1919045
-
Asn
GTT
[Ensembl]
¡û
>C161079428
CP014949
Bacillota
Enterococcus faecalis LD33 [CP014949]
16887
16962
+
Asn
GTT
-
¡û
>C161079482
CP014949
Bacillota
Enterococcus faecalis LD33 [CP014949]
1472062
1471987
-
Asn
GTT
-
¡û
>W121121759
AMAO01000161
Bacillota
Enterococcus faecium P1137 [AMAO]
19647
19572
-
Asn
GTT
[ENA]
¡û
>W1610066750
BCPY01000038
Bacillota
Tetragenococcus solitarius NBRC 100494 [BCPY]
23101
23178
+
Asn
GTT
[ENA]
¡û
>W1610066752
BCPY01000057
Bacillota
Tetragenococcus solitarius NBRC 100494 [BCPY]
261
336
+
Asn
GTT
[ENA]
¡û
>W1610066765
BCPY01000074
Bacillota
Tetragenococcus solitarius NBRC 100494 [BCPY]
3144
3069
-
Asn
GTT
[ENA]
¡û
>W1610501904
FLKQ01000003
Bacillota
Streptococcus pyogenes [FLKQ]
175383
175308
-
Asn
GTT
[ENA]
¡û
>W1610518193
JAUA01000071
Bacillota
Streptococcus equi subsp. zooepidemicus Sz57 [JAUA]
39515
39440
-
Asn
GTT
[ENA]
¡û
>W1610674065
LKGR01000010
Bacillota
Enterococcus faecalis [LKGR]
163868
163793
-
Asn
GTT
[ENA]
¡û
>W1610866742
LQWV01000012
Bacillota
Streptococcus gordonii [LQWV]
12549
12476
-
Asn
GTT
[ENA]
¡û
>W1610866744
LQWV01000012
Bacillota
Streptococcus gordonii [LQWV]
941
868
-
Asn
GTT
[ENA]
¡û
>W1610866761
LQWV01000040
Bacillota
Streptococcus gordonii [LQWV]
228580
228507
-
Asn
GTT
[ENA]
¡û
>W1610867578
LQXU01000070
Bacillota
Streptococcus constellatus [LQXU]
14146
14073
-
Asn
GTT
[ENA]
¡û
>W1610867591
LQXU01000088
Bacillota
Streptococcus constellatus [LQXU]
42425
42349
-
Asn
GTT
[ENA]
¡û
>W1610880677
LRHB01000017
Bacillota
Streptococcus pyogenes [LRHB]
1003
1078
+
Asn
GTT
[ENA]
¡û
>W1710064088
BCPY01000038
Bacillota
Tetragenococcus solitarius NBRC 100494 [BCPY]
23101
23178
+
Asn
GTT
[ENA]
¡û
>W1710064090
BCPY01000057
Bacillota
Tetragenococcus solitarius NBRC 100494 [BCPY]
261
336
+
Asn
GTT
[ENA]
¡û
>W1710064103
BCPY01000074
Bacillota
Tetragenococcus solitarius NBRC 100494 [BCPY]
3144
3069
-
Asn
GTT
[ENA]
¡û
>W1710495374
FLKQ01000003
Bacillota
Streptococcus pyogenes [FLKQ]
175383
175308
-
Asn
GTT
[ENA]
¡û
>W1710525271
FNJK01000003
Bacillota
Streptococcus equinus [FNJK]
20314
20387
+
Asn
GTT
[ENA]
¡û
>W1710613713
JAUA01000071
Bacillota
Streptococcus equi subsp. zooepidemicus Sz57 [JAUA]
39515
39440
-
Asn
GTT
[ENA]
¡û
>W1710659310
JXKN01000005
Bacillota
Enterococcus dispar [JXKN]
241154
241079
-
Asn
GTT
[ENA]
¡û
>W1710659374
JXKO01000076
Bacillota
Enterococcus gilvus [JXKO]
607
532
-
Asn
GTT
[ENA]
¡û
>W1710659880
JXLD01000011
Bacillota
Enterococcus saccharolyticus [JXLD]
46141
46065
-
Asn
GTT
[ENA]
¡û
>W1710659895
JXLD01000030
Bacillota
Enterococcus saccharolyticus [JXLD]
6711
6636
-
Asn
GTT
[ENA]
¡û
>W1710696620
LAWQ01000001
Bacillota
Streptococcus gordonii [LAWQ]
209090
209017
-
Asn
GTT
[ENA]
¡û
>W1710696654
LAWQ01000013
Bacillota
Streptococcus gordonii [LAWQ]
11846
11773
-
Asn
GTT
[ENA]
¡û
>W1710696656
LAWQ01000013
Bacillota
Streptococcus gordonii [LAWQ]
240
167
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK