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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238175 (89 seq.)
>W131063417
ANKV01000028
Bacillota
Lacticaseibacillus paracasei subsp. tolerans Lpl7 [ANKV]
33217
33142
-
Thr
CGT
[ENA]
¡û
>W131063789
ANLG01000859
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp48 [ANLG]
10530
10456
-
Thr
CGT
[ENA]
¡û
>W1711210216
LXIA01000012
Bacillota
Lentilactobacillus parabuchneri [LXIA]
174
248
+
Thr
CGT
[ENA]
¡û
>W1711224720
LXUG01000017
Bacillota
Lentilactobacillus parabuchneri [LXUG]
174
248
+
Thr
CGT
[ENA]
¡û
>W1711236374
LYDQ01000017
Bacillota
Lentilactobacillus parabuchneri [LYDQ]
174
248
+
Thr
CGT
[ENA]
¡û
>W1711438168
MIQE01000001
Bacillota
Lentilactobacillus sunkii [MIQE]
39278
39204
-
Thr
CGT
[ENA]
¡û
>W1711588938
MODS01000095
Bacillota
Lacticaseibacillus casei [MODS]
2348
2423
+
Thr
CGT
[ENA]
¡û
>W1711685961
MSAS01000023
Bacillota
Lentilactobacillus parabuchneri [MSAS]
251
325
+
Thr
CGT
[ENA]
¡û
>W1711686019
MSAT01000026
Bacillota
Lentilactobacillus parabuchneri [MSAT]
251
325
+
Thr
CGT
[ENA]
¡û
>W1711686063
MSAU01000019
Bacillota
Lentilactobacillus parabuchneri [MSAU]
176
250
+
Thr
CGT
[ENA]
¡û
>W1711686143
MSAV01000081
Bacillota
Lentilactobacillus parabuchneri [MSAV]
5345
5419
+
Thr
CGT
[ENA]
¡û
>W1711686192
MSAW01000056
Bacillota
Lentilactobacillus parabuchneri [MSAW]
267
341
+
Thr
CGT
[ENA]
¡û
>W1711686236
MSAX01000022
Bacillota
Lentilactobacillus parabuchneri [MSAX]
255
329
+
Thr
CGT
[ENA]
¡û
>W1711686308
MSAY01000027
Bacillota
Lentilactobacillus parabuchneri [MSAY]
255
329
+
Thr
CGT
[ENA]
¡û
>W1711686366
MSAZ01000025
Bacillota
Lentilactobacillus parabuchneri [MSAZ]
255
329
+
Thr
CGT
[ENA]
¡û
>W1711686424
MSBA01000029
Bacillota
Lentilactobacillus parabuchneri [MSBA]
255
329
+
Thr
CGT
[ENA]
¡û
>W1711686482
MSBB01000031
Bacillota
Lentilactobacillus parabuchneri [MSBB]
251
325
+
Thr
CGT
[ENA]
¡û
>W1711686525
MSBC01000021
Bacillota
Lentilactobacillus parabuchneri [MSBC]
255
329
+
Thr
CGT
[ENA]
¡û
>W1711686597
MSBD01000043
Bacillota
Lentilactobacillus parabuchneri [MSBD]
251
325
+
Thr
CGT
[ENA]
¡û
>W1711686654
MSBE01000021
Bacillota
Lentilactobacillus parabuchneri [MSBE]
5433
5507
+
Thr
CGT
[ENA]
¡û
>W1711686715
MSBF01000027
Bacillota
Lentilactobacillus parabuchneri [MSBF]
306
380
+
Thr
CGT
[ENA]
¡û
>W1711686772
MSBG01000027
Bacillota
Lentilactobacillus parabuchneri [MSBG]
434
508
+
Thr
CGT
[ENA]
¡û
>W1711686829
MSBH01000028
Bacillota
Lentilactobacillus parabuchneri [MSBH]
434
508
+
Thr
CGT
[ENA]
¡û
>W1711686871
MSBI01000016
Bacillota
Lentilactobacillus parabuchneri [MSBI]
176
250
+
Thr
CGT
[ENA]
¡û
>W1711944146
NBEM01000014
Bacillota
Ligilactobacillus salivarius [NBEM]
37136
37062
-
Thr
CGT
[ENA]
¡û
>W1711944331
NBEQ01000021
Bacillota
Ligilactobacillus salivarius [NBEQ]
33784
33710
-
Thr
CGT
[ENA]
¡û
>W1711999855
NDXH01000079
Bacillota
Lacticaseibacillus paracasei [NDXH]
2588
2663
+
Thr
CGT
[ENA]
¡û
>C171084023
CP018796
Bacillota
Lentilactobacillus parabuchneri FAM21731 [CP018796]
1961299
1961373
+
Thr
CGT
-
¡û
>WENV180180467
OAWK01003112
[OAWK] human gut metagenome; faeces
564
490
-
Thr
CGT
[ENA]
¢þ
>WENV180478011
OBZA01000008
[OBZA] human gut metagenome; faeces
195987
195913
-
Thr
CGT
[ENA]
¢þ
>W141226608
BAKI01000081
Bacillota
Lentilactobacillus farraginis JCM 14108 [BAKI]
3165
3093
-
Thr
CGT
[ENA]
¡û
>C181203569
LN898144
Bacillota
Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 [LN898144]
1537689
1537615
-
Thr
CGT
-
¡û
>W09122596
ACGH01000125
Bacillota
Lentilactobacillus buchneri ATCC 11577 [ACGH]
48
120
+
Thr
CGT
[ENA]
¡û
>W1910622558
LKGB01000060
Bacillota
Lacticaseibacillus paracasei FAM22278 [LKGB]
10038
9963
-
Thr
CGT
[ENA]
¡û
>W1910870891
NCWS01000017
Bacillota
Lentilactobacillus kefiri OG2 [NCWS]
207
281
+
Thr
CGT
[ENA]
¡û
>W1910871332
NCXA01000060
Bacillota
Lentilactobacillus parakefiri KR [NCXA]
7144
7070
-
Thr
CGT
[ENA]
¡û
>W1910871474
NCXD01000003
Bacillota
Lentilactobacillus kefiri KR [NCXD]
207
281
+
Thr
CGT
[ENA]
¡û
>W1910871721
NCXI01000061
Bacillota
Lentilactobacillus parakefiri OG2 [NCXI]
14776
14702
-
Thr
CGT
[ENA]
¡û
>W1910872089
NDFJ01000160
Bacillota
Lentilactobacillus kefiri Olga [NDFJ]
207
281
+
Thr
CGT
[ENA]
¡û
>W1911551345
OVSN01000013
Bacillota
Lentilactobacillus raoultii Marseille-P4006 [OVSN]
3517
3589
+
Thr
CGT
[ENA]
¡û
>W1911631931
PUFL01000026
Bacillota
Lentilactobacillus parakefiri DSM 10551 [PUFL]
3286
3360
+
Thr
CGT
[ENA]
¡û
>W1911632174
PUFP01000051
Bacillota
Lentilactobacillus buchneri ATCC 4005 [PUFP]
253
327
+
Thr
CGT
[ENA]
¡û
>W1810586583
QFFL01000001
Bacillota
Lentilactobacillus kefiri SGL 13 [QFFL]
645211
645137
-
Thr
CGT
[ENA]
¡û
>C11112254
CP002652
Bacillota
Lentilactobacillus buchneri NRRL B-30929 [CP002652]
1594330
1594256
-
Thr
CGT
[Ensembl]
¡û
>C161074706
CP014623
Bacillota
Loigolactobacillus backii TMW 1.1988 [CP014623]
299101
299175
+
Thr
CGT
-
¡û
>W121008312
AGBU01000073
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
114
190
+
Thr
CGT
[ENA]
¡û
>W121016902
AGRJ01000162
Bacillota
Lentilactobacillus kisonensis F0435 [AGRJ]
40055
39981
-
Thr
CGT
[ENA]
¡û
>W1610031457
AYYV01000079
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [AYYV]
108
182
+
Thr
CGT
[ENA]
¡û
>W1610032905
AZCN01000090
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM [AZCN]
5103
5029
-
Thr
CGT
[ENA]
¡û
>W1610034139
AZDM01000062
Bacillota
Lentilactobacillus buchneri DSM 20057 [AZDM]
50
124
+
Thr
CGT
[ENA]
¡û
>W1610034806
AZEA01000001
Bacillota
Lentilactobacillus sunkii DSM 19904 [AZEA]
404974
404900
-
Thr
CGT
[ENA]
¡û
>W1610034866
AZEB01000011
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [AZEB]
82747
82673
-
Thr
CGT
[ENA]
¡û
>W1610034978
AZED01000017
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
106
180
+
Thr
CGT
[ENA]
¡û
>W1610035220
AZEI01000035
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [AZEI]
108
184
+
Thr
CGT
[ENA]
¡û
>W1610035495
AZEN01000373
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
382
456
+
Thr
CGT
[ENA]
¡û
>W1610035503
AZEN01000379
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
6994
6920
-
Thr
CGT
[ENA]
¡û
>W1610036276
AZFE01000003
Bacillota
Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 [AZFE]
111
185
+
Thr
CGT
[ENA]
¡û
>W1610037305
AZFY01000044
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
3218
3146
-
Thr
CGT
[ENA]
¡û
>W1610037362
AZFZ01000005
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
86763
86691
-
Thr
CGT
[ENA]
¡û
>W1610037964
AZGK01000023
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [AZGK]
78
152
+
Thr
CGT
[ENA]
¡û
>W1610044600
BBAR01000005
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [BBAR]
86744
86672
-
Thr
CGT
[ENA]
¡û
>W1610044694
BBAT01000001
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [BBAT]
50
124
+
Thr
CGT
[ENA]
¡û
>W1610044767
BBAU01000019
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [BBAU]
52234
52160
-
Thr
CGT
[ENA]
¡û
>W1610044844
BBAV01000084
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [BBAV]
3010
2934
-
Thr
CGT
[ENA]
¡û
>W121009523
AGEY01000163
Bacillota
Lentilactobacillus parafarraginis F0439 [AGEY]
6141
6069
-
Thr
CGT
[ENA]
¡û
>C131001729
CP003043
Bacillota
Lentilactobacillus buchneri subsp. silagei CD034 [CP003043]
1592346
1592272
-
Thr
CGT
[Ensembl]
¡û
>W1610528581
JQBJ01000040
Bacillota
Lentilactobacillus parabuchneri [JQBJ]
117
43
-
Thr
CGT
[ENA]
¡û
>W1610997942
LXIA01000012
Bacillota
Lentilactobacillus parabuchneri [LXIA]
174
248
+
Thr
CGT
[ENA]
¡û
>W1611008684
LXUG01000017
Bacillota
Lentilactobacillus parabuchneri [LXUG]
174
248
+
Thr
CGT
[ENA]
¡û
>W1611014519
LYDQ01000017
Bacillota
Lentilactobacillus parabuchneri [LYDQ]
174
248
+
Thr
CGT
[ENA]
¡û
>W1710028384
AYYV01000079
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [AYYV]
108
182
+
Thr
CGT
[ENA]
¡û
>W1710030236
AZCN01000090
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM [AZCN]
5103
5029
-
Thr
CGT
[ENA]
¡û
>W1710031266
AZDM01000062
Bacillota
Lentilactobacillus buchneri DSM 20057 [AZDM]
50
124
+
Thr
CGT
[ENA]
¡û
>W1710031933
AZEA01000001
Bacillota
Lentilactobacillus sunkii DSM 19904 [AZEA]
404974
404900
-
Thr
CGT
[ENA]
¡û
>W1710031993
AZEB01000011
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [AZEB]
82747
82673
-
Thr
CGT
[ENA]
¡û
>W1710032105
AZED01000017
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
106
180
+
Thr
CGT
[ENA]
¡û
>W1710032347
AZEI01000035
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [AZEI]
108
184
+
Thr
CGT
[ENA]
¡û
>W1710032534
AZEN01000373
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
382
456
+
Thr
CGT
[ENA]
¡û
>W1710032542
AZEN01000379
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
6994
6920
-
Thr
CGT
[ENA]
¡û
>W1710033315
AZFE01000003
Bacillota
Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 [AZFE]
111
185
+
Thr
CGT
[ENA]
¡û
>W1710034344
AZFY01000044
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
3218
3146
-
Thr
CGT
[ENA]
¡û
>W1710034401
AZFZ01000005
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
86763
86691
-
Thr
CGT
[ENA]
¡û
>W1710035003
AZGK01000023
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [AZGK]
78
152
+
Thr
CGT
[ENA]
¡û
>W1710041698
BBAR01000005
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [BBAR]
86744
86672
-
Thr
CGT
[ENA]
¡û
>W1710041792
BBAT01000001
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [BBAT]
50
124
+
Thr
CGT
[ENA]
¡û
>W1710041865
BBAU01000019
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [BBAU]
52234
52160
-
Thr
CGT
[ENA]
¡û
>W1710041942
BBAV01000084
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [BBAV]
3010
2934
-
Thr
CGT
[ENA]
¡û
>W1710081754
BDGB01000130
Bacillota
Lentilactobacillus parakefiri [BDGB]
348
422
+
Thr
CGT
[ENA]
¡û
>W1710630171
JQBJ01000040
Bacillota
Lentilactobacillus parabuchneri [JQBJ]
117
43
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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