This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238239 (77 seq.)
>W1710921078
LNZF01000004
Bacillota
Paenibacillus polymyxa [LNZF]
892
967
+
Thr
TGT
[ENA]
¡û
>W1710921138
LNZF01000026
Bacillota
Paenibacillus polymyxa [LNZF]
4951
4876
-
Thr
TGT
[ENA]
¡û
>W1711009812
LQQX01000015
Bacillota
Paenibacillus jamilae [LQQX]
259
334
+
Thr
TGT
[ENA]
¡û
>W1711270659
LZEL01000044
Bacillota
Paenibacillus polymyxa [LZEL]
442
367
-
Thr
TGT
[ENA]
¡û
>W1711270687
LZEL01000069
Bacillota
Paenibacillus polymyxa [LZEL]
351616
351541
-
Thr
TGT
[ENA]
¡û
>W1711309516
MAQW01000029
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
536654
536579
-
Thr
TGT
[ENA]
¡û
>W1711309529
MAQW01000030
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
732
807
+
Thr
TGT
[ENA]
¡û
>W1711340456
MCBP01000005
Bacillota
Paenibacillus kribbensis [MCBP]
395336
395261
-
Thr
TGT
[ENA]
¡û
>W1711340471
MCBP01000008
Bacillota
Paenibacillus kribbensis [MCBP]
266220
266145
-
Thr
TGT
[ENA]
¡û
>W1711499681
MKQM01000051
Bacillota
Paenibacillus odorifer [MKQM]
355
430
+
Thr
TGT
[ENA]
¡û
>W1711633856
MPTS01000008
Bacillota
Paenibacillus odorifer [MPTS]
252072
251997
-
Thr
TGT
[ENA]
¡û
>W1711634155
MPTW01000064
Bacillota
Paenibacillus odorifer [MPTW]
570
495
-
Thr
TGT
[ENA]
¡û
>W1711677555
MRTP01000007
Bacillota
Paenibacillus rhizosphaerae [MRTP]
309523
309448
-
Thr
TGT
[ENA]
¡û
>W1711677582
MRTP01000054
Bacillota
Paenibacillus rhizosphaerae [MRTP]
277
349
+
Thr
TGT
[ENA]
¡û
>W1711677591
MRTP01000067
Bacillota
Paenibacillus rhizosphaerae [MRTP]
231
306
+
Thr
TGT
[ENA]
¡û
>W1711677842
MRTT01000096
Bacillota
Paenibacillus glucanolyticus [MRTT]
285
360
+
Thr
TGT
[ENA]
¡û
>W131176697
ARKG01000037
Bacillota
Cohnella laeviribosi DSM 21336 [ARKG]
8043
7968
-
Thr
TGT
[ENA]
¡û
>C171098057
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
328955
329030
+
Thr
TGT
-
¡û
>C171098075
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
3481336
3481411
+
Thr
TGT
-
¡û
>C171098115
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
2941203
2941128
-
Thr
TGT
-
¡û
>W141000956
ADFW01000001
Bacillota
Paenibacillus larvae subsp. larvae DSM 25719 [ADFW]
2688967
2689042
+
Thr
TGT
[ENA]
¡û
>W141000980
ADFW01000001
Bacillota
Paenibacillus larvae subsp. larvae DSM 25719 [ADFW]
2149498
2149423
-
Thr
TGT
[ENA]
¡û
>W141001004
ADFW01000002
Bacillota
Paenibacillus larvae subsp. larvae DSM 25719 [ADFW]
597897
597972
+
Thr
TGT
[ENA]
¡û
>W141193516
AYSE01000009
Bacillota
Bacillus sp. FJAT-14578 [AYSE]
564
639
+
Thr
TGT
[ENA]
¡û
>W141193538
AYSE01000012
Bacillota
Bacillus sp. FJAT-14578 [AYSE]
126461
126386
-
Thr
TGT
[ENA]
¡û
>W141193547
AYSE01000013
Bacillota
Bacillus sp. FJAT-14578 [AYSE]
85581
85506
-
Thr
TGT
[ENA]
¡û
>W141193587
AYSE01000023
Bacillota
Bacillus sp. FJAT-14578 [AYSE]
8702
8627
-
Thr
TGT
[ENA]
¡û
>W141276249
JADQ01000022
Bacillota
Paenibacillus sp. J14 [JADQ]
70937
70862
-
Thr
TGT
[ENA]
¡û
>W141276281
JADQ01000072
Bacillota
Paenibacillus sp. J14 [JADQ]
17920
17845
-
Thr
TGT
[ENA]
¡û
>WENV183732187
PJTV01006794
[PJTV] soil metagenome; Soil enriched on wood chips: alkali lignin treatment
95
20
-
Thr
TGT
[ENA]
¢þ
>WENV170965880
MTEV01008368
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
126
201
+
Thr
TGT
[ENA]
¢þ
>C181054857
CP021965
Bacillota
Paenibacillus odorifer CBA7130 [CP021965]
5896798
5896723
-
Thr
TGT
-
¡û
>C181121248
CP025696
Bacillota
Paenibacillus sp. lzh-N1 [CP025696]
2753936
2754011
+
Thr
TGT
-
¡û
>C181121297
CP025696
Bacillota
Paenibacillus sp. lzh-N1 [CP025696]
1299613
1299538
-
Thr
TGT
-
¡û
>W141520533
JGVU02000014
Bacillota
Metabacillus indicus LMG 22858 [JGVU]
408
333
-
Thr
TGT
[ENA]
¡û
>W141520542
JGVU02000020
Bacillota
Metabacillus indicus LMG 22858 [JGVU]
344
269
-
Thr
TGT
[ENA]
¡û
>W1910692566
MDDO01000024
Bacillota
Paenibacillus aceti L14 [MDDO]
183843
183768
-
Thr
TGT
[ENA]
¡û
>W1910692592
MDDO01000032
Bacillota
Paenibacillus aceti L14 [MDDO]
239
314
+
Thr
TGT
[ENA]
¡û
>W1910692597
MDDO01000034
Bacillota
Paenibacillus aceti L14 [MDDO]
574
649
+
Thr
TGT
[ENA]
¡û
>W1910755814
MKZM01000008
Bacillota
Paenibacillus sp. GM2FR GM2FR [MKZM]
4602828
4602753
-
Thr
TGT
[ENA]
¡û
>W1910755839
MKZM01000009
Bacillota
Paenibacillus sp. GM2FR GM2FR [MKZM]
519
594
+
Thr
TGT
[ENA]
¡û
>W1911178125
NQLZ01000016
Bacillota
Paenibacillus sp. 7541 [NQLZ]
243016
242941
-
Thr
TGT
[ENA]
¡û
>W1911178155
NQLZ01000047
Bacillota
Paenibacillus sp. 7541 [NQLZ]
50659
50584
-
Thr
TGT
[ENA]
¡û
>W1911594984
PNGA01000001
Bacillota
Bacillus sp. UMB0899 [PNGA]
722223
722296
+
Thr
TGT
[ENA]
¡û
>W1810057076
PDHM01000003
Bacillota
Paenibacillus sp. EZ-K15 [PDHM]
415
490
+
Thr
TGT
[ENA]
¡û
>W1810057110
PDHM01000022
Bacillota
Paenibacillus sp. EZ-K15 [PDHM]
292162
292087
-
Thr
TGT
[ENA]
¡û
>C151047831
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
6311557
6311482
-
Thr
TGT
[Ensembl]
¡û
>C151048204
CP009288
Bacillota
Paenibacillus durus DSM 1735 [CP009288]
141809
141884
+
Thr
TGT
[Ensembl]
¡û
>C151048260
CP009288
Bacillota
Paenibacillus durus DSM 1735 [CP009288]
5061374
5061299
-
Thr
TGT
[Ensembl]
¡û
>W1510081398
CDSE01000007
Bacillota
Paenibacillus dakarensis FF9 [CDSE]
239
314
+
Thr
TGT
[ENA]
¡û
>W1510081409
CDSE01000012
Bacillota
Paenibacillus dakarensis FF9 [CDSE]
6898
6973
+
Thr
TGT
[ENA]
¡û
>W1510647472
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
3514949
3515024
+
Thr
TGT
[ENA]
¡û
>W1510647517
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
2091196
2091121
-
Thr
TGT
[ENA]
¡û
>C11117531
HE577054
Bacillota
Paenibacillus polymyxa M1 [HE577054]
460358
460433
+
Thr
TGT
[Ensembl]
¡û
>C11117596
HE577054
Bacillota
Paenibacillus polymyxa M1 [HE577054]
4839556
4839481
-
Thr
TGT
[Ensembl]
¡û
>W11180981
AGIP01000014
Bacillota
Paenibacillus lactis 154 [AGIP]
2637
2712
+
Thr
TGT
[ENA]
¡û
>W11181000
AGIP01000025
Bacillota
Paenibacillus lactis 154 [AGIP]
630
705
+
Thr
TGT
[ENA]
¡û
>C161058341
CP013653
Bacillota
Paenibacillus sp. 32O-W [CP013653]
4664942
4664867
-
Thr
TGT
[Ensembl]
¡û
>W121009898
AGFX01000016
Bacillota
Paenibacillus peoriae KCTC 3763 [AGFX]
136000
135925
-
Thr
TGT
[ENA]
¡û
>W121009916
AGFX01000017
Bacillota
Paenibacillus peoriae KCTC 3763 [AGFX]
5164
5089
-
Thr
TGT
[ENA]
¡û
>W1610046272
BBCF01000206
Bacillota
Calditerricola satsumensis JCM 14719 [BBCF]
3301
3226
-
Thr
TGT
[ENA]
¡û
>W1610594748
LDYF01000040
Bacillota
Bacillus coahuilensis m2-6 [LDYF]
58441
58366
-
Thr
TGT
[ENA]
¡û
>W1610594771
LDYF01000059
Bacillota
Bacillus coahuilensis m2-6 [LDYF]
1279
1204
-
Thr
TGT
[ENA]
¡û
>W1610594783
LDYF01000061
Bacillota
Bacillus coahuilensis m2-6 [LDYF]
1003
1078
+
Thr
TGT
[ENA]
¡û
>W1611030223
LZEL01000044
Bacillota
Paenibacillus polymyxa [LZEL]
442
367
-
Thr
TGT
[ENA]
¡û
>W1611030251
LZEL01000069
Bacillota
Paenibacillus polymyxa [LZEL]
351616
351541
-
Thr
TGT
[ENA]
¡û
>W1611057173
MAQW01000029
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
536654
536579
-
Thr
TGT
[ENA]
¡û
>W1611057186
MAQW01000030
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
732
807
+
Thr
TGT
[ENA]
¡û
>W1710043068
BBCF01000206
Bacillota
Calditerricola satsumensis JCM 14719 [BBCF]
3301
3226
-
Thr
TGT
[ENA]
¡û
>W1710518273
FNDX01000044
Bacillota
Paenibacillus typhae [FNDX]
50498
50423
-
Thr
TGT
[ENA]
¡û
>W1710518299
FNDX01000048
Bacillota
Paenibacillus typhae [FNDX]
749
824
+
Thr
TGT
[ENA]
¡û
>W1710607572
FXAE01000018
Bacillota
Paenibacillus barengoltzii J12 [FXAE]
638
713
+
Thr
TGT
[ENA]
¡û
>W1710607613
FXAE01000082
Bacillota
Paenibacillus barengoltzii J12 [FXAE]
1069
1144
+
Thr
TGT
[ENA]
¡û
>W1710705089
LCZJ02000033
Bacillota
Paenibacillus etheri [LCZJ]
695149
695074
-
Thr
TGT
[ENA]
¡û
>W1710714200
LDYF01000040
Bacillota
Bacillus coahuilensis m2-6 [LDYF]
58441
58366
-
Thr
TGT
[ENA]
¡û
>W1710714223
LDYF01000059
Bacillota
Bacillus coahuilensis m2-6 [LDYF]
1279
1204
-
Thr
TGT
[ENA]
¡û
>W1710714235
LDYF01000061
Bacillota
Bacillus coahuilensis m2-6 [LDYF]
1003
1078
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK