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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238270 (20 seq.)
>A171002027
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
2085125
2085197
+
Ile
GAT
-
¡û
>A171002271
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
646888
646814
-
Ile
GAT
-
¡û
>A171003990
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
1654052
1654124
+
Ile
GAT
-
¡û
>A171007335
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
614107
614035
-
Ile
GAT
-
¡û
>A171007366
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
2317770
2317842
+
Ile
GAT
-
¡û
>A171007422
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
728436
728364
-
Ile
GAT
-
¡û
>A171007683
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
615641
615569
-
Ile
GAT
-
¡û
>WENV180037135
FVAA010652290
[FVAA] soil metagenome; Soil
74
2
-
Ile
GAT
[ENA]
¢þ
>WENV181230030
OFEK01000207
[OFEK] activated sludge metagenome; Anaerobic digester
72467
72395
-
Ile
GAT
[ENA]
¢þ
>WENV170021505
BBPF01016087
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
297
225
-
Ile
GAT
[ENA]
¢þ
>WENV170634764
JAHE01059820
[JAHE] sediment metagenome; lake sediment
373
445
+
Ile
GAT
[ENA]
¢þ
>WENV170672034
LAHU01279001
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
89
17
-
Ile
GAT
[ENA]
¢þ
>WENV170677316
LDZT01004925
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1058
986
-
Ile
GAT
[ENA]
¢þ
>WENV170972437
MTKX01030066
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
273
345
+
Ile
GAT
[ENA]
¢þ
>WENV170977621
MTKZ01027797
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
911
983
+
Ile
GAT
[ENA]
¢þ
>W1910575118
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
425356
425284
-
Ile
GAT
[ENA]
¡û
>W1610006251
AMGN01000091
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
48955
48883
-
Ile
GAT
[ENA]
¡û
>W1610011037
AMPO01000013
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
12207
12135
-
Ile
GAT
[ENA]
¡û
>W1610049143
BBES01000003
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
127661
127589
-
Ile
GAT
[ENA]
¡û
>W1610613870
LGGL01000032
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
1058
986
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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