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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238275 (71 seq.)
>A171000090
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
726497
726570
+
Phe
GAA
-
¡û
>A171000899
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1128571
1128644
+
Phe
GAA
-
¡û
>A171002040
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
1980057
1979984
-
Phe
GAA
-
¡û
>A171002270
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
738749
738676
-
Phe
GAA
-
¡û
>A171003989
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
1543191
1543264
+
Phe
GAA
-
¡û
>A171007334
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
679014
678941
-
Phe
GAA
-
¡û
>A171007365
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
2205187
2205260
+
Phe
GAA
-
¡û
>A171007421
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
830197
830124
-
Phe
GAA
-
¡û
>A171007682
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
732232
732159
-
Phe
GAA
-
¡û
>A171007702
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1118226
1118299
+
Phe
GAA
-
¡û
>WENV180037658
FVAA011425238
[FVAA] soil metagenome; Soil
178
105
-
Phe
GAA
[ENA]
¢þ
>WENV180240527
OBDD01007994
[OBDD] human gut metagenome; human gut
29
103
+
Phe
GAA
[ENA]
¢þ
>WENV180335344
OBLG01000013
[OBLG] human gut metagenome; human gut
40813
40887
+
Phe
GAA
[ENA]
¢þ
>WENV180658252
OCVV010746143
[OCVV] gut metagenome; gut
866
940
+
Phe
GAA
[ENA]
¢þ
>WENV180658254
OCVV010746143
[OCVV] gut metagenome; gut
866
940
+
Phe
GAA
[ENA]
¢þ
>WENV180663460
OCVV011123395
[OCVV] gut metagenome; gut
98
172
+
Phe
GAA
[ENA]
¢þ
>WENV180663462
OCVV011123395
[OCVV] gut metagenome; gut
98
172
+
Phe
GAA
[ENA]
¢þ
>WENV180666519
OCVV011214701
[OCVV] gut metagenome; gut
557
631
+
Phe
GAA
[ENA]
¢þ
>WENV180666520
OCVV011214701
[OCVV] gut metagenome; gut
557
631
+
Phe
GAA
[ENA]
¢þ
>WENV180674750
OCVV011354148
[OCVV] gut metagenome; gut
6078
6004
-
Phe
GAA
[ENA]
¢þ
>WENV180674752
OCVV011354148
[OCVV] gut metagenome; gut
6078
6004
-
Phe
GAA
[ENA]
¢þ
>WENV180871595
ODLN01123736
[ODLN] human metagenome; G_DNA_Stool
189
263
+
Phe
GAA
[ENA]
¢þ
>WENV181229821
OFEK01000077
[OFEK] activated sludge metagenome; Anaerobic digester
78349
78422
+
Phe
GAA
[ENA]
¢þ
>WENV181229936
OFEK01000126
[OFEK] activated sludge metagenome; Anaerobic digester
100806
100733
-
Phe
GAA
[ENA]
¢þ
>WENV181336113
OFMD01000025
[OFMD] human gut metagenome; human gut
97360
97286
-
Phe
GAA
[ENA]
¢þ
>WENV182180244
OHNO01000177
[OHNO] human gut metagenome; feces
14117
14191
+
Phe
GAA
[ENA]
¢þ
>WENV182662569
OJMO01000002
[OJMO] human gut metagenome; feces
49746
49820
+
Phe
GAA
[ENA]
¢þ
>WENV182899617
OKST01000334
[OKST] human gut metagenome; feces
14831
14905
+
Phe
GAA
[ENA]
¢þ
>WENV183172416
OLPC01010205
[OLPC] human gut metagenome; faeces
2798
2724
-
Phe
GAA
[ENA]
¢þ
>WENV183232404
OLQU01009722
[OLQU] human gut metagenome; faeces
1539
1613
+
Phe
GAA
[ENA]
¢þ
>WENV183293106
OLSK01000024
[OLSK] human gut metagenome; faeces
14087
14161
+
Phe
GAA
[ENA]
¢þ
>WENV183382528
OLYL01002415
[OLYL] human gut metagenome; feces
5599
5673
+
Phe
GAA
[ENA]
¢þ
>WENV183507385
OMGY01018728
[OMGY] human gut metagenome; human gut
800
874
+
Phe
GAA
[ENA]
¢þ
>WENV183519035
OMNT01000070
[OMNT] human gut metagenome; faeces
65597
65523
-
Phe
GAA
[ENA]
¢þ
>WENV183774987
PPYF01064731
[PPYF] human gut metagenome; stool from patient with Crohn's disease
63163
63089
-
Phe
GAA
[ENA]
¢þ
>WENV183786258
PPYF01303781
[PPYF] human gut metagenome; stool from patient with Crohn's disease
31842
31768
-
Phe
GAA
[ENA]
¢þ
>WENV170008114
AMZC01002101
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1383
1456
+
Phe
GAA
[ENA]
¢þ
>WENV170021498
BBPF01015268
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
156
229
+
Phe
GAA
[ENA]
¢þ
>At1563
CP000102
Euryarchaeota
Methanosphaera stadtmanae DSM 3091 [CP000102]
414184
414256
+
Phe
GAA
[Ensembl]
¡û
>At1580
CP000102
Euryarchaeota
Methanosphaera stadtmanae DSM 3091 [CP000102]
444980
444908
-
Phe
GAA
[Ensembl]
¡û
>At1653
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
749632
749704
+
Phe
GAA
[Ensembl]
¡û
>WENV170669316
LAHR01116464
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
331
404
+
Phe
GAA
[ENA]
¢þ
>WENV170671205
LAHU01025615
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
2143
2216
+
Phe
GAA
[ENA]
¢þ
>WENV170671589
LAHU01095375
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
1190
1263
+
Phe
GAA
[ENA]
¢þ
>WENV170675914
LDZQ01001263
[LDZQ] terrestrial metagenome; oil reservoir sample I2
2971
2897
-
Phe
GAA
[ENA]
¢þ
>WENV170676549
LDZS01001209
[LDZS] terrestrial metagenome; oil reservoir sample K3
1839
1765
-
Phe
GAA
[ENA]
¢þ
>WENV170676703
LDZS01001983
[LDZS] terrestrial metagenome; oil reservoir sample K3
101
28
-
Phe
GAA
[ENA]
¢þ
>WENV170677336
LDZT01005074
[LDZT] terrestrial metagenome; oil reservoir sample SB1
396
469
+
Phe
GAA
[ENA]
¢þ
>WENV170979531
MTKZ01095352
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
961
888
-
Phe
GAA
[ENA]
¢þ
>W1910574909
JQJK01000007
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
391984
391910
-
Phe
GAA
[ENA]
¡û
>W1910574953
JQKN01000002
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
189533
189607
+
Phe
GAA
[ENA]
¡û
>W1910575117
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
512537
512464
-
Phe
GAA
[ENA]
¡û
>W1910576034
JRWK01000007
Euryarchaeota
Methanosphaera sp. WGK6 [JRWK]
80680
80752
+
Phe
GAA
[ENA]
¡û
>W1910576035
JRWK01000007
Euryarchaeota
Methanosphaera sp. WGK6 [JRWK]
110721
110647
-
Phe
GAA
[ENA]
¡û
>W1910635120
LMVM01000001
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
351000
350927
-
Phe
GAA
[ENA]
¡û
>W1910635163
LMVN01000012
Euryarchaeota
Methanosphaera cuniculi 1R-7 [LMVN]
130
202
+
Phe
GAA
[ENA]
¡û
>W1910635164
LMVN01000014
Euryarchaeota
Methanosphaera cuniculi 1R-7 [LMVN]
19135
19063
-
Phe
GAA
[ENA]
¡û
>W1910646622
LWMS01000018
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
19095
19023
-
Phe
GAA
[ENA]
¡û
>W1910646636
LWMS01000045
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
25233
25159
-
Phe
GAA
[ENA]
¡û
>W1910655450
LZPM01000018
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
251404
251331
-
Phe
GAA
[ENA]
¡û
>W1910656139
MAIF01000141
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
8984
9058
+
Phe
GAA
[ENA]
¡û
>W1910656143
MAIF01000165
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
19037
18963
-
Phe
GAA
[ENA]
¡û
>W1910899148
NGJK01000019
Euryarchaeota
Methanosphaera stadtmanae PA5 [NGJK]
463
537
+
Phe
GAA
[ENA]
¡û
>W1910899150
NGJK01000020
Euryarchaeota
Methanosphaera stadtmanae PA5 [NGJK]
11698
11624
-
Phe
GAA
[ENA]
¡û
>W1911690453
QLOE01000003
Euryarchaeota
Methanothermobacter tenebrarum MCM B 1447 [QLOE]
169444
169369
-
Phe
GAA
[ENA]
¡û
>W1911722792
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
501534
501461
-
Phe
GAA
[ENA]
¡û
>W1610006221
AMGN01000003
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
16396
16469
+
Phe
GAA
[ENA]
¡û
>W1610011036
AMPO01000012
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
66858
66931
+
Phe
GAA
[ENA]
¡û
>W1610049166
BBES01000014
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
20974
20901
-
Phe
GAA
[ENA]
¡û
>W1610612493
LGEU01000077
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
2971
2897
-
Phe
GAA
[ENA]
¡û
>W1610613890
LGGL01000181
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
396
469
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK