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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238343 (26 seq.)
>W1711081626
LSSV01000025
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
42793
42718
-
Val
TAC
[ENA]
¡û
>W1711082325
LSTT01000386
Actinomycetota
Dietzia cinnamea [LSTT]
250053
250128
+
Val
TAC
[ENA]
¡û
>W1711139758
LVFF01000051
Actinomycetota
Dietzia maris [LVFF]
124235
124310
+
Val
TAC
[ENA]
¡û
>W1711187613
LWPP01000519
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
4538
4613
+
Val
TAC
[ENA]
¡û
>W1711351238
MDCG01000369
Actinomycetota
Dietzia alimentaria [MDCG]
332
257
-
Val
TAC
[ENA]
¡û
>W131099099
AOSR01000013
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
118483
118410
-
Val
TAC
[ENA]
¡û
>WENV181169981
OEIV010018255
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1270
1344
+
Val
TAC
[ENA]
¢þ
>C181017346
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
1367022
1367096
+
Val
TAC
-
¡û
>C181017394
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
1340359
1340434
+
Val
TAC
-
¡û
>C181017395
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
1341833
1341906
+
Val
TAC
-
¡û
>C181107048
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
1337407
1337480
+
Val
TAC
-
¡û
>C181148322
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
2524147
2524221
+
Val
TAC
-
¡û
>W1911279024
NTGA01000029
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
32530
32457
-
Val
TAC
[ENA]
¡û
>W1911422563
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
996094
996020
-
Val
TAC
[ENA]
¡û
>W1810463948
PZZY01000005
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
163677
163752
+
Val
TAC
[ENA]
¡û
>W1810463949
PZZY01000005
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
165151
165224
+
Val
TAC
[ENA]
¡û
>W1810722010
QNTT01000021
Actinomycetota
Dietzia maris SST1 [QNTT]
51002
51076
+
Val
TAC
[ENA]
¡û
>W11139517
AEKG01000106
Actinomycetota
Dietzia cinnamea P4 [AEKG]
4541
4617
+
Val
TAC
[ENA]
¡û
>W11178760
AGFF01000008
Actinomycetota
Dietzia alimentaria 72 [AGFF]
124795
124870
+
Val
TAC
[ENA]
¡û
>W1610069385
BCSL01000003
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
66139
66214
+
Val
TAC
[ENA]
¡û
>W1610069917
BCSW01000030
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
24416
24341
-
Val
TAC
[ENA]
¡û
>W1610920461
LSSV01000025
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
42793
42718
-
Val
TAC
[ENA]
¡û
>W1610921110
LSTT01000386
Actinomycetota
Dietzia cinnamea [LSTT]
250053
250128
+
Val
TAC
[ENA]
¡û
>W1610950766
LVFF01000051
Actinomycetota
Dietzia maris [LVFF]
124235
124310
+
Val
TAC
[ENA]
¡û
>W1710066758
BCSL01000003
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
66139
66214
+
Val
TAC
[ENA]
¡û
>W1710067290
BCSW01000030
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
24416
24341
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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