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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238413 (42 seq.)
>W1711293916
LZYZ01000005
Bacillota
Clostridium saccharobutylicum [LZYZ]
276931
277006
+
Thr
GGT
[ENA]
¡û
>W1711294003
LZZA01000138
Bacillota
Clostridium saccharobutylicum [LZZA]
27539
27614
+
Thr
GGT
[ENA]
¡û
>W1711311441
MARZ01000040
Bacillota
Clostridium perfringens [MARZ]
1334
1259
-
Thr
GGT
[ENA]
¡û
>W1711791625
MWJB01000009
Bacillota
Clostridium botulinum [MWJB]
60108
60033
-
Thr
GGT
[ENA]
¡û
>C171045576
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
201017
201092
+
Thr
GGT
-
¡û
>C171045660
CP016087
Bacillota
Clostridium saccharoperbutylacetonicum N1-504 [CP016087]
175610
175685
+
Thr
GGT
-
¡û
>C171045727
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
201017
201092
+
Thr
GGT
-
¡û
>C171045896
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
212684
212759
+
Thr
GGT
-
¡û
>C171045981
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
201017
201092
+
Thr
GGT
-
¡û
>W131092162
AOIF01000152
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
125
50
-
Thr
GGT
[ENA]
¡û
>WENV180121432
OASR01001269
[OASR] human gut metagenome; faeces
36
111
+
Thr
GGT
[ENA]
¢þ
>WENV180124068
OASX01001636
[OASX] human gut metagenome; faeces
6156
6231
+
Thr
GGT
[ENA]
¢þ
>WENV180129294
OATC01000343
[OATC] human gut metagenome; faeces
11851
11926
+
Thr
GGT
[ENA]
¢þ
>WENV180144426
OAUA01009159
[OAUA] human gut metagenome; faeces
732
657
-
Thr
GGT
[ENA]
¢þ
>WENV180153124
OAUR01001502
[OAUR] human gut metagenome; faeces
1724
1799
+
Thr
GGT
[ENA]
¢þ
>WENV180170975
OAVV01009012
[OAVV] human gut metagenome; faeces
39
114
+
Thr
GGT
[ENA]
¢þ
>WENV180431249
OBWG01009928
[OBWG] human gut metagenome; faeces
1132
1057
-
Thr
GGT
[ENA]
¢þ
>WENV180444269
OBWZ01000436
[OBWZ] human gut metagenome; faeces
74
149
+
Thr
GGT
[ENA]
¢þ
>WENV180504931
OCAO01000235
[OCAO] human gut metagenome; faeces
13634
13709
+
Thr
GGT
[ENA]
¢þ
>WENV180506792
OCAS01009879
[OCAS] human gut metagenome; faeces
1153
1078
-
Thr
GGT
[ENA]
¢þ
>WENV181810982
OGSX01000272
[OGSX] human gut metagenome; fecal sample 1 from infant 8
188
113
-
Thr
GGT
[ENA]
¢þ
>WENV182601946
OJJJ01001874
[OJJJ] metagenome; faeces
1999
2074
+
Thr
GGT
[ENA]
¢þ
>WENV182617366
OJKD01002297
[OJKD] metagenome; faeces
222
297
+
Thr
GGT
[ENA]
¢þ
>WENV182835022
OKFJ01001154
[OKFJ] human gut metagenome; human gut
1401
1326
-
Thr
GGT
[ENA]
¢þ
>WENV182865623
OKQK01002803
[OKQK] human gut metagenome; human gut
172
97
-
Thr
GGT
[ENA]
¢þ
>WENV183245038
OLRE01001072
[OLRE] human gut metagenome; faeces
27976
27901
-
Thr
GGT
[ENA]
¢þ
>W1910004353
AUUU01000084
Bacillota
Clostridium sp. LS [AUUU]
24901
24976
+
Thr
GGT
[ENA]
¡û
>C141007588
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
201017
201092
+
Thr
GGT
[Ensembl]
¡û
>W1810052432
PDCI01000006
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
226684
226609
-
Thr
GGT
[ENA]
¡û
>W1810052523
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
289002
288927
-
Thr
GGT
[ENA]
¡û
>W121001743
ADLP01000013
Bacillota
Clostridium perfringens WAL-14572 [ADLP]
525
450
-
Thr
GGT
[ENA]
¡û
>W1610030617
AYXL01000187
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
33855
33780
-
Thr
GGT
[ENA]
¡û
>W1610061726
BCMV01000048
Bacillota
Sarcina ventriculi [BCMV]
199
124
-
Thr
GGT
[ENA]
¡û
>W1610061739
BCMW01000001
Bacillota
Sarcina ventriculi [BCMW]
24873
24948
+
Thr
GGT
[ENA]
¡û
>W1610101412
CYZR01000010
Bacillota
Sarcina ventriculi [CYZR]
27381
27456
+
Thr
GGT
[ENA]
¡û
>W1610112581
CZLD01000015
Bacillota
Clostridium neonatale [CZLD]
289300
289225
-
Thr
GGT
[ENA]
¡û
>WENV082968
BAAW01016331
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
344
269
-
Thr
GGT
[ENA]
>W1710027740
AYXL01000187
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
33855
33780
-
Thr
GGT
[ENA]
¡û
>W1710059391
BCMV01000048
Bacillota
Sarcina ventriculi [BCMV]
199
124
-
Thr
GGT
[ENA]
¡û
>W1710059404
BCMW01000001
Bacillota
Sarcina ventriculi [BCMW]
24873
24948
+
Thr
GGT
[ENA]
¡û
>W1710104167
CYZR01000010
Bacillota
Sarcina ventriculi [CYZR]
27381
27456
+
Thr
GGT
[ENA]
¡û
>W1710115285
CZLD01000015
Bacillota
Clostridium neonatale [CZLD]
289300
289225
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK