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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23842 (79 seq.)
>W1710866394
LMHK01000004
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
190504
190415
-
Ser
CGA
[ENA]
¡û
>W1711018292
LQWW01000008
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
268681
268770
+
Ser
CGA
[ENA]
¡û
>W1711019434
LQXX01000004
Alphaproteobacteria
Bartonella bacilliformis [LQXX]
274359
274448
+
Ser
CGA
[ENA]
¡û
>W1711166957
LVVY01000062
Alphaproteobacteria
Devosia elaeis S37 [LVVY]
36687
36776
+
Ser
CGA
[ENA]
¡û
>W1711385868
MEET01000008
Alphaproteobacteria
Pelagibacterium sp. SCN 63-126 [MEET]
70565
70654
+
Ser
CGA
[ENA]
¡û
>W1711385923
MEEU01000011
Alphaproteobacteria
Pelagibacterium sp. SCN 63-23 [MEEU]
167889
167800
-
Ser
CGA
[ENA]
¡û
>W1711385944
MEEU01000031
Alphaproteobacteria
Pelagibacterium sp. SCN 63-23 [MEEU]
47410
47497
+
Ser
CGA
[ENA]
¡û
>W1711385993
MEEV01000012
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
144631
144542
-
Ser
CGA
[ENA]
¡û
>W1711386052
MEEV01000060
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
16994
17080
+
Ser
CGA
[ENA]
¡û
>W1711387026
MEGC01000072
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
24280
24191
-
Ser
CGA
[ENA]
¡û
>W1711504861
MKUY01000005
Alphaproteobacteria
Devosia sp. 63-57 [MKUY]
384789
384700
-
Ser
CGA
[ENA]
¡û
>W1711505901
MKVY01000016
Alphaproteobacteria
Rhizobiales bacterium 65-9 [MKVY]
11028
11117
+
Ser
CGA
[ENA]
¡û
>W1711738597
MUBG01000001
Alphaproteobacteria
Bartonella sp. WD12.1 [MUBG]
146339
146250
-
Ser
CGA
[ENA]
¡û
>W1711766194
MUYE01000001
Alphaproteobacteria
Bartonella sp. AR 15-3 [MUYE]
1210471
1210560
+
Ser
CGA
[ENA]
¡û
>W1711766827
MUYW01000035
Alphaproteobacteria
Bartonella taylorii [MUYW]
6131
6220
+
Ser
CGA
[ENA]
¡û
>C171060766
CP017315
Alphaproteobacteria
Candidatus Tokpelaia hoelldoblerii [CP017315]
186888
186799
-
Ser
CGA
-
¡û
>C171099812
CP019787
Alphaproteobacteria
Bartonella sp. JB15 [CP019787]
1102039
1102128
+
Ser
CGA
-
¡û
>C171099852
CP019788
Alphaproteobacteria
Bartonella sp. JB63 [CP019788]
1101709
1101798
+
Ser
CGA
-
¡û
>W131044210
AMQK01000005
Alphaproteobacteria
Bartonella bacilliformis INS [AMQK]
29312
29223
-
Ser
CGA
[ENA]
¡û
>C002031
CP000524
Alphaproteobacteria
Bartonella bacilliformis KC583 KC583; ATCC 35685 [CP000524]
298834
298745
-
Ser
CGA
[Ensembl]
¡û
>C004027
BX897700
Alphaproteobacteria
Bartonella quintana str. Toulouse [BX897700]
170943
170854
-
Ser
CGA
[Ensembl]
¡û
>W141006779
AGWB01000003
Alphaproteobacteria
Bartonella bovis m02 [AGWB]
79043
78954
-
Ser
CGA
[ENA]
¡û
>W141006831
AGWD01000005
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Tweed [AGWD]
136158
136069
-
Ser
CGA
[ENA]
¡û
>W141009629
AHPB01000018
Alphaproteobacteria
Bartonella quintana JK 39 [AHPB]
277169
277080
-
Ser
CGA
[ENA]
¡û
>W141009691
AHPC01000012
Alphaproteobacteria
Bartonella quintana JK 67 [AHPC]
277875
277786
-
Ser
CGA
[ENA]
¡û
>W141009730
AHPD01000011
Alphaproteobacteria
Bartonella quintana JK 68 [AHPD]
10731
10820
+
Ser
CGA
[ENA]
¡û
>W141009750
AHPE01000006
Alphaproteobacteria
Bartonella quintana JK 56 [AHPE]
10753
10842
+
Ser
CGA
[ENA]
¡û
>W141009795
AHPF01000008
Alphaproteobacteria
Bartonella quintana JK 63 [AHPF]
277212
277123
-
Ser
CGA
[ENA]
¡û
>W141009844
AHPG01000005
Alphaproteobacteria
Bartonella quintana JK 31 [AHPG]
10731
10820
+
Ser
CGA
[ENA]
¡û
>W141009897
AHPH01000011
Alphaproteobacteria
Bartonella quintana JK 19 [AHPH]
10712
10801
+
Ser
CGA
[ENA]
¡û
>W141010047
AHPL01000004
Alphaproteobacteria
Bartonella koehlerae C-29 [AHPL]
16594
16505
-
Ser
CGA
[ENA]
¡û
>W141071178
ASIS01000007
Alphaproteobacteria
Bartonella bacilliformis Hosp800-02 [ASIS]
37165
37076
-
Ser
CGA
[ENA]
¡û
>W141071195
ASIT01000007
Alphaproteobacteria
Bartonella bacilliformis CUSCO5 [ASIT]
31876
31787
-
Ser
CGA
[ENA]
¡û
>W141071260
ASIU01000007
Alphaproteobacteria
Bartonella bacilliformis Cond044 [ASIU]
50609
50520
-
Ser
CGA
[ENA]
¡û
>W141071326
ASIW01000007
Alphaproteobacteria
Bartonella bacilliformis Peru38 [ASIW]
40268
40179
-
Ser
CGA
[ENA]
¡û
>W141071367
ASIX01000007
Alphaproteobacteria
Bartonella bacilliformis VAB9028 [ASIX]
37159
37070
-
Ser
CGA
[ENA]
¡û
>W141071424
ASIY01000007
Alphaproteobacteria
Bartonella bacilliformis Ver075 [ASIY]
44626
44537
-
Ser
CGA
[ENA]
¡û
>W141071440
ASIZ01000007
Alphaproteobacteria
Bartonella bacilliformis CAR600-02 [ASIZ]
31903
31814
-
Ser
CGA
[ENA]
¡û
>W141222609
AZZV01000001
Alphaproteobacteria
Bartonella quintana BQ2-D70 [AZZV]
606461
606550
+
Ser
CGA
[ENA]
¡û
>W141222766
AZZY01000009
Alphaproteobacteria
Bartonella quintana JK 12 [AZZY]
285285
285196
-
Ser
CGA
[ENA]
¡û
>W141222780
AZZZ01000006
Alphaproteobacteria
Bartonella quintana JK 7 [AZZZ]
285152
285063
-
Ser
CGA
[ENA]
¡û
>W141275376
JACX01000001
Alphaproteobacteria
Bartonella grahamii ATCC 700132 [JACX]
29889
29978
+
Ser
CGA
[ENA]
¡û
>W141275417
JACY01000001
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii ATCC 51672 [JACY]
20503
20592
+
Ser
CGA
[ENA]
¡û
>WENV183729352
PJTQ01026069
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
441
352
-
Ser
CGA
[ENA]
¢þ
>WENV183737401
PJUD01006390
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
2470
2381
-
Ser
CGA
[ENA]
¢þ
>WENV183740150
PJUF01000487
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
26027
25938
-
Ser
CGA
[ENA]
¢þ
>WENV183741709
PJUG01001995
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
501
412
-
Ser
CGA
[ENA]
¢þ
>WENV183742903
PJUI01008912
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
74
163
+
Ser
CGA
[ENA]
¢þ
>C181037922
CP019489
Alphaproteobacteria
Bartonella sp. 1-1C [CP019489]
1194731
1194820
+
Ser
CGA
-
¡û
>C181139120
CP026747
Alphaproteobacteria
Devosia sp. I507 [CP026747]
1757437
1757526
+
Ser
CGA
-
¡û
>C181209347
LS483373
Alphaproteobacteria
Bartonella quintana NCTC12899 [LS483373]
24658
24569
-
Ser
CGA
-
¡û
>W09104841
AANF01000002
Alphaproteobacteria
Bartonella bacilliformis KC583 [AANF]
41759
41670
-
Ser
CGA
[ENA]
¡û
>C191214276
LR134529
Alphaproteobacteria
Bartonella vinsonii NCTC12905 [LR134529]
398850
398761
-
Ser
CGA
-
¡û
>W141554723
JHPP01000001
Alphaproteobacteria
Bartonella bacilliformis San Pedro600-02 [JHPP]
772766
772855
+
Ser
CGA
[ENA]
¡û
>W141554777
JHPQ01000004
Alphaproteobacteria
Bartonella bacilliformis str. Heidi Mejia [JHPQ]
7108
7197
+
Ser
CGA
[ENA]
¡û
>W141554793
JHPR01000003
Alphaproteobacteria
Bartonella bacilliformis Peru-18 [JHPR]
415068
414979
-
Ser
CGA
[ENA]
¡û
>W141814370
JQGC01000015
Alphaproteobacteria
Devosia riboflavina [JQGC]
238835
238924
+
Ser
CGA
[ENA]
¡û
>C09102321
CP001562
Alphaproteobacteria
Bartonella grahamii as4aup [CP001562]
181516
181427
-
Ser
CGA
[Ensembl]
¡û
>W1810426219
PYVZ01000011
Alphaproteobacteria
Devosia indica IO390501 [PYVZ]
140285
140374
+
Ser
CGA
[ENA]
¡û
>W1810463986
PZZZ01000003
Alphaproteobacteria
Mycoplana dimorpha DSM 7138 [PZZZ]
142871
142960
+
Ser
CGA
[ENA]
¡û
>W1810576892
QENV01000001
Alphaproteobacteria
Devosia sp. PTEAB7WZ [QENV]
225550
225461
-
Ser
CGA
[ENA]
¡û
>W1511541948
JZEX01000124
Alphaproteobacteria
Devosia geojensis BD-c194 [JZEX]
107006
106917
-
Ser
CGA
[ENA]
¡û
>W1511541998
JZEY01000061
Alphaproteobacteria
Devosia chinhatensis IPL18 [JZEY]
608032
607943
-
Ser
CGA
[ENA]
¡û
>W1511568603
LAJF01000052
Alphaproteobacteria
Devosia limi DSM 17137 [LAJF]
10709
10798
+
Ser
CGA
[ENA]
¡û
>W1511568662
LAJG01000021
Alphaproteobacteria
Devosia soli GH2-10 [LAJG]
351848
351937
+
Ser
CGA
[ENA]
¡û
>W1511574015
LANK01000028
Alphaproteobacteria
Devosia subaequoris HST3-14 [LANK]
353494
353583
+
Ser
CGA
[ENA]
¡û
>C161064377
CP014012
Alphaproteobacteria
Bartonella bacilliformis ATCC 35685D-5 [CP014012]
342355
342266
-
Ser
CGA
-
¡û
>W121059053
AILT01000009
Alphaproteobacteria
Bartonella sp. DB5-6 [AILT]
21200
21289
+
Ser
CGA
[ENA]
¡û
>W121059305
AILZ01000009
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis OK-94-513 [AILZ]
24229
24318
+
Ser
CGA
[ENA]
¡û
>W121059462
AIMD01000013
Alphaproteobacteria
Bartonella taylorii 8TBB [AIMD]
271756
271667
-
Ser
CGA
[ENA]
¡û
>W121059634
AIMH01000015
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis Pm136co [AIMH]
25308
25397
+
Ser
CGA
[ENA]
¡û
>C131002092
CP003123
Alphaproteobacteria
Bartonella australis AUST/NH1 [CP003123]
295234
295145
-
Ser
CGA
[Ensembl]
¡û
>C131002135
CP003124
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Winnie [CP003124]
165338
165249
-
Ser
CGA
[Ensembl]
¡û
>C131006658
CP003784
Alphaproteobacteria
Bartonella quintana RM-11 [CP003784]
169091
169002
-
Ser
CGA
[Ensembl]
¡û
>W1610728740
LMHK01000004
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
190504
190415
-
Ser
CGA
[ENA]
¡û
>W1610866768
LQWW01000008
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
268681
268770
+
Ser
CGA
[ENA]
¡û
>W1610867722
LQXX01000004
Alphaproteobacteria
Bartonella bacilliformis [LQXX]
274359
274448
+
Ser
CGA
[ENA]
¡û
>W1610977497
LVVY01000062
Alphaproteobacteria
Devosia elaeis S37 [LVVY]
36687
36776
+
Ser
CGA
[ENA]
¡û
>W1710579510
FPCK01000003
Alphaproteobacteria
Devosia crocina [FPCK]
238680
238591
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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