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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238470 (67 seq.)
>WENV180280202
OBHX01257971
[OBHX] metagenome; feces
99
172
+
Asn
GTT
[ENA]
¢þ
>WENV180332993
OBLF01000089
[OBLF] metagenome; feces
11666
11739
+
Asn
GTT
[ENA]
¢þ
>WENV180332994
OBLF01000089
[OBLF] metagenome; feces
11785
11858
+
Asn
GTT
[ENA]
¢þ
>WENV180349198
OBLO01027506
[OBLO] metagenome; feces
676
749
+
Asn
GTT
[ENA]
¢þ
>WENV180415202
OBVE01000021
[OBVE] human gut metagenome; faeces
163724
163797
+
Asn
GTT
[ENA]
¢þ
>WENV180415203
OBVE01000021
[OBVE] human gut metagenome; faeces
163842
163919
+
Asn
GTT
[ENA]
¢þ
>W141079263
ATLK01000001
Actinomycetota
Bifidobacterium bombi DSM 19703 [ATLK]
525127
525202
+
Asn
GTT
[ENA]
¡û
>WENV180944464
ODUC01018420
[ODUC] human metagenome; G_DNA_Supragingival plaque
1366
1293
-
Asn
GTT
[ENA]
¢þ
>WENV180976431
ODUY01106175
[ODUY] human metagenome; G_DNA_Supragingival plaque
42
115
+
Asn
GTT
[ENA]
¢þ
>WENV181133346
OEGE01198860
[OEGE] human metagenome; G_DNA_Stool
108
35
-
Asn
GTT
[ENA]
¢þ
>WENV181347883
OFMM01055084
[OFMM] human gut metagenome; human gut
77
1
-
Asn
GTT
[ENA]
¢þ
>WENV181355792
OFMT01008871
[OFMT] human gut metagenome; human gut
261
188
-
Asn
GTT
[ENA]
¢þ
>WENV181674084
OGOO01020303
[OGOO] human gut metagenome; faeces
1549
1472
-
Asn
GTT
[ENA]
¢þ
>WENV181754183
OGQR01007423
[OGQR] human gut metagenome; faeces
850
773
-
Asn
GTT
[ENA]
¢þ
>WENV182293022
OHWB01030859
[OHWB] human gut metagenome; feces
500
573
+
Asn
GTT
[ENA]
¢þ
>WENV182386140
OIDX01015428
[OIDX] human gut metagenome; feces
510
437
-
Asn
GTT
[ENA]
¢þ
>WENV183037554
OLGA01035622
[OLGA] human gut metagenome; faeces
1047
1120
+
Asn
GTT
[ENA]
¢þ
>WENV183037555
OLGA01035622
[OLGA] human gut metagenome; faeces
1166
1239
+
Asn
GTT
[ENA]
¢þ
>WENV183211147
OLQC01021602
[OLQC] human gut metagenome; faeces
707
630
-
Asn
GTT
[ENA]
¢þ
>WENV183305231
OLSX01000556
[OLSX] human gut metagenome; faeces
1380
1303
-
Asn
GTT
[ENA]
¢þ
>W141523566
JGYK01000001
Actinomycetota
Bifidobacterium actinocoloniiforme DSM 22766 [JGYK]
430526
430599
+
Asn
GTT
[ENA]
¡û
>W141523637
JGYL01000004
Actinomycetota
Bifidobacterium angulatum [JGYL]
551148
551221
+
Asn
GTT
[ENA]
¡û
>W141523638
JGYL01000004
Actinomycetota
Bifidobacterium angulatum [JGYL]
551266
551343
+
Asn
GTT
[ENA]
¡û
>W141524490
JGZC01000006
Actinomycetota
Bifidobacterium merycicum [JGZC]
11098
11171
+
Asn
GTT
[ENA]
¡û
>W141524491
JGZC01000006
Actinomycetota
Bifidobacterium merycicum [JGZC]
11216
11293
+
Asn
GTT
[ENA]
¡û
>W09113543
ABYS02000004
Actinomycetota
Bifidobacterium angulatum DSM 20098 [ABYS]
696223
696296
+
Asn
GTT
[ENA]
¡û
>W09113544
ABYS02000004
Actinomycetota
Bifidobacterium angulatum DSM 20098 [ABYS]
696341
696418
+
Asn
GTT
[ENA]
¡û
>W1910828915
MWWQ01000014
Actinomycetota
Pseudoscardovia suis DSM 24744 [MWWQ]
286670
286743
+
Asn
GTT
[ENA]
¡û
>W1910828918
MWWR01000002
Actinomycetota
Pseudoscardovia radai DSM 24742 [MWWR]
72836
72909
+
Asn
GTT
[ENA]
¡û
>W1911539511
ONAO01000014
Actinomycetota
Bifidobacterium merycicum [ONAO]
28538
28611
+
Asn
GTT
[ENA]
¡û
>W1911539512
ONAO01000014
Actinomycetota
Bifidobacterium merycicum [ONAO]
28656
28733
+
Asn
GTT
[ENA]
¡û
>W1810052355
PDCG01000002
Actinomycetota
Bifidobacterium aemilianum XV10 [PDCG]
227202
227125
-
Asn
GTT
[ENA]
¡û
>W1810052424
PDCH01000013
Actinomycetota
Bifidobacterium xylocopae XV2 [PDCH]
35711
35784
+
Asn
GTT
[ENA]
¡û
>W1810089961
PGFC01000001
Actinomycetota
Pseudoscardovia suis DSM 24744 [PGFC]
607211
607284
+
Asn
GTT
[ENA]
¡û
>C151000176
AP012322
Actinomycetota
Bifidobacterium angulatum DSM 20098 = JCM 7096 [AP012322]
1022552
1022625
+
Asn
GTT
[Ensembl]
¡û
>C151000177
AP012322
Actinomycetota
Bifidobacterium angulatum DSM 20098 = JCM 7096 [AP012322]
1022670
1022747
+
Asn
GTT
[Ensembl]
¡û
>C151000637
AP012333
Actinomycetota
Parascardovia denticolens DSM 10105 = JCM 12538 [AP012333]
935860
935787
-
Asn
GTT
[Ensembl]
¡û
>C151000676
AP012334
Actinomycetota
Scardovia inopinata JCM 12537 [AP012334]
906800
906727
-
Asn
GTT
[Ensembl]
¡û
>C151086277
CP011786
Actinomycetota
Bifidobacterium actinocoloniiforme DSM 22766 [CP011786]
489130
489203
+
Asn
GTT
-
¡û
>W10111187
ADCX01000004
Actinomycetota
Scardovia inopinata F0304 [ADCX]
112133
112060
-
Asn
GTT
[ENA]
¡û
>W10112123
ADEB01000010
Actinomycetota
Parascardovia denticolens F0305 [ADEB]
361926
361999
+
Asn
GTT
[ENA]
¡û
>W11114038
ADCX01000004
Actinomycetota
Scardovia inopinata F0304 [ADCX]
112133
112060
-
Asn
GTT
[ENA]
¡û
>W11115100
ADEB01000010
Actinomycetota
Parascardovia denticolens F0305 [ADEB]
361926
361999
+
Asn
GTT
[ENA]
¡û
>W11141907
AEON01000001
Actinomycetota
Parascardovia denticolens DSM 10105 [AEON]
978626
978699
+
Asn
GTT
[ENA]
¡û
>W1511566679
LAHN01000001
Actinomycetota
Bifidobacterium angulatum GT102 [LAHN]
188950
188877
-
Asn
GTT
[ENA]
¡û
>W1511566680
LAHN01000001
Actinomycetota
Bifidobacterium angulatum GT102 [LAHN]
188832
188755
-
Asn
GTT
[ENA]
¡û
>C161069334
CP014241
Actinomycetota
Bifidobacterium angulatum GT102 [CP014241]
1576981
1577054
+
Asn
GTT
[Ensembl]
¡û
>C161069335
CP014241
Actinomycetota
Bifidobacterium angulatum GT102 [CP014241]
1577099
1577176
+
Asn
GTT
[Ensembl]
¡û
>W121023099
AGZS01000001
Actinomycetota
Scardovia wiggsiae F0424 [AGZS]
203114
203187
+
Asn
GTT
[ENA]
¡û
>W121077611
AKCI01000001
Actinomycetota
Scardovia wiggsiae F0424 [AKCI]
554299
554372
+
Asn
GTT
[ENA]
¡û
>W121084562
AKII01000015
Actinomycetota
Parascardovia denticolens IPLA 20019 [AKII]
9044
8971
-
Asn
GTT
[ENA]
¡û
>W1610516135
FMBL01000001
Actinomycetota
Bifidobacterium commune [FMBL]
535133
535206
+
Asn
GTT
[ENA]
¡û
>W1610518540
JDTL01000007
Actinomycetota
Bifidobacterium merycicum DSM 6492 [JDTL]
15626
15553
-
Asn
GTT
[ENA]
¡û
>W1610518541
JDTL01000007
Actinomycetota
Bifidobacterium merycicum DSM 6492 [JDTL]
15508
15431
-
Asn
GTT
[ENA]
¡û
>W1610518837
JDTS01000001
Actinomycetota
Bifidobacterium bombi DSM 19703 [JDTS]
385430
385505
+
Asn
GTT
[ENA]
¡û
>W1610519130
JDTY01000001
Actinomycetota
Bifidobacterium angulatum DSM 20098 = JCM 7096 [JDTY]
215538
215465
-
Asn
GTT
[ENA]
¡û
>W1610519131
JDTY01000001
Actinomycetota
Bifidobacterium angulatum DSM 20098 = JCM 7096 [JDTY]
215420
215343
-
Asn
GTT
[ENA]
¡û
>W1610519979
JDUR01000002
Actinomycetota
Bifidobacterium actinocoloniiforme DSM 22766 [JDUR]
64984
65057
+
Asn
GTT
[ENA]
¡û
>W1710501426
FMBL01000001
Actinomycetota
Bifidobacterium commune [FMBL]
535133
535206
+
Asn
GTT
[ENA]
¡û
>W1710582425
FQTX01000001
Actinomycetota
Bifidobacterium merycicum DSM 6492 [FQTX]
616342
616415
+
Asn
GTT
[ENA]
¡û
>W1710582426
FQTX01000001
Actinomycetota
Bifidobacterium merycicum DSM 6492 [FQTX]
616460
616537
+
Asn
GTT
[ENA]
¡û
>W1710614060
JDTL01000007
Actinomycetota
Bifidobacterium merycicum DSM 6492 [JDTL]
15626
15553
-
Asn
GTT
[ENA]
¡û
>W1710614061
JDTL01000007
Actinomycetota
Bifidobacterium merycicum DSM 6492 [JDTL]
15508
15431
-
Asn
GTT
[ENA]
¡û
>W1710614357
JDTS01000001
Actinomycetota
Bifidobacterium bombi DSM 19703 [JDTS]
385430
385505
+
Asn
GTT
[ENA]
¡û
>W1710614585
JDTY01000001
Actinomycetota
Bifidobacterium angulatum DSM 20098 = JCM 7096 [JDTY]
215538
215465
-
Asn
GTT
[ENA]
¡û
>W1710614586
JDTY01000001
Actinomycetota
Bifidobacterium angulatum DSM 20098 = JCM 7096 [JDTY]
215420
215343
-
Asn
GTT
[ENA]
¡û
>W1710615392
JDUR01000002
Actinomycetota
Bifidobacterium actinocoloniiforme DSM 22766 [JDUR]
64984
65057
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK