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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238491 (37 seq.)
>W131176868
ARKJ01000025
Bacteroidota
Flavobacterium rivuli DSM 21788 [ARKJ]
226364
226439
+
Lys
TTT
[ENA]
¡û
>W131176869
ARKJ01000025
Bacteroidota
Flavobacterium rivuli DSM 21788 [ARKJ]
226469
226544
+
Lys
TTT
[ENA]
¡û
>W131229177
AUGP01000017
Bacteroidota
Flavobacterium subsaxonicum DSM 21790 [AUGP]
65338
65413
+
Lys
TTT
[ENA]
¡û
>W1711503332
MKTM01000032
Bacteroidota
Flavobacterium sp. 40-81 [MKTM]
28547
28472
-
Lys
TTT
[ENA]
¡û
>W1711503333
MKTM01000032
Bacteroidota
Flavobacterium sp. 40-81 [MKTM]
28441
28366
-
Lys
TTT
[ENA]
¡û
>W1711503335
MKTM01000032
Bacteroidota
Flavobacterium sp. 40-81 [MKTM]
28149
28074
-
Lys
TTT
[ENA]
¡û
>W1711503336
MKTM01000032
Bacteroidota
Flavobacterium sp. 40-81 [MKTM]
28043
27968
-
Lys
TTT
[ENA]
¡û
>C171016692
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
3526029
3525954
-
Lys
TTT
-
¡û
>C171016693
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
3525922
3525847
-
Lys
TTT
-
¡û
>W141094595
AVCS01000011
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
73333
73258
-
Lys
TTT
[ENA]
¡û
>W141094596
AVCS01000011
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
73227
73152
-
Lys
TTT
[ENA]
¡û
>W141096649
AVFO01000001
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
32002
32077
+
Lys
TTT
[ENA]
¡û
>W141096650
AVFO01000001
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
32108
32183
+
Lys
TTT
[ENA]
¡û
>WENV183731176
PJTS01016374
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
557
630
+
Lys
TTT
[ENA]
¢þ
>WENV183731208
PJTS01019275
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
698
625
-
Lys
TTT
[ENA]
¢þ
>C181175897
CP029186
Bacteroidota
Flavobacterium album HYN0059 [CP029186]
3921188
3921261
+
Lys
TTT
-
¡û
>C181175898
CP029186
Bacteroidota
Flavobacterium album HYN0059 [CP029186]
3921287
3921360
+
Lys
TTT
-
¡û
>C181202208
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
3117750
3117823
+
Lys
TTT
-
¡û
>C181202209
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
3117851
3117924
+
Lys
TTT
-
¡û
>W1810762851
QQAR01000006
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
22054
22127
+
Lys
TTT
[ENA]
¡û
>W1810762852
QQAR01000006
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
22162
22235
+
Lys
TTT
[ENA]
¡û
>W1610534996
JRLU01000012
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
75745
75670
-
Lys
TTT
[ENA]
¡û
>W1610534997
JRLU01000012
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
75640
75565
-
Lys
TTT
[ENA]
¡û
>W1610535107
JRLX01000028
Bacteroidota
Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]
55587
55512
-
Lys
TTT
[ENA]
¡û
>W1610535108
JRLX01000028
Bacteroidota
Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]
55482
55407
-
Lys
TTT
[ENA]
¡û
>W1610535134
JRLY01000010
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
64941
65016
+
Lys
TTT
[ENA]
¡û
>W1610535135
JRLY01000010
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
65044
65119
+
Lys
TTT
[ENA]
¡û
>W1710505756
FMTY01000001
Bacteroidota
Flavobacterium saliperosum [FMTY]
26063
26138
+
Lys
TTT
[ENA]
¡û
>W1710505757
FMTY01000001
Bacteroidota
Flavobacterium saliperosum [FMTY]
26169
26244
+
Lys
TTT
[ENA]
¡û
>W1710574123
FOYA01000010
Bacteroidota
Flavobacterium akiainvivens [FOYA]
142266
142341
+
Lys
TTT
[ENA]
¡û
>W1710574124
FOYA01000010
Bacteroidota
Flavobacterium akiainvivens [FOYA]
142365
142440
+
Lys
TTT
[ENA]
¡û
>W1710637232
JRLU01000012
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
75745
75670
-
Lys
TTT
[ENA]
¡û
>W1710637233
JRLU01000012
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
75640
75565
-
Lys
TTT
[ENA]
¡û
>W1710637343
JRLX01000028
Bacteroidota
Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]
55587
55512
-
Lys
TTT
[ENA]
¡û
>W1710637344
JRLX01000028
Bacteroidota
Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]
55482
55407
-
Lys
TTT
[ENA]
¡û
>W1710637370
JRLY01000010
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
64941
65016
+
Lys
TTT
[ENA]
¡û
>W1710637371
JRLY01000010
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
65044
65119
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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