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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238493 (104 seq.)
>W1711385338
MEEC01000019
Betaproteobacteria
Lautropia sp. SCN 70-15 [MEEC]
1291
1215
-
Arg
TCT
[ENA]
¡û
>WENV180127970
OATA01016919
[OATA] human gut metagenome; faeces
711
787
+
Arg
TCT
[ENA]
¡û
>WENV180150457
OAUN01000725
[OAUN] human gut metagenome; faeces
8740
8664
-
Arg
TCT
[ENA]
¡û
>WENV180175878
OAWC01002248
[OAWC] human gut metagenome; faeces
1907
1983
+
Arg
TCT
[ENA]
¡û
>WENV180202055
OBAF01081287
[OBAF] human gut metagenome; human gut
213
137
-
Arg
TCT
[ENA]
¡û
>WENV180211861
OBAM01034344
[OBAM] human gut metagenome; human gut
543
619
+
Arg
TCT
[ENA]
¡û
>WENV180216164
OBAQ01030083
[OBAQ] human gut metagenome; human gut
723
799
+
Arg
TCT
[ENA]
¡û
>WENV180220679
OBAW01000621
[OBAW] human gut metagenome; human gut
373
449
+
Arg
TCT
[ENA]
¡û
>WENV180222218
OBBC01029002
[OBBC] human gut metagenome; human gut
176
100
-
Arg
TCT
[ENA]
¡û
>WENV180246963
OBDQ01031608
[OBDQ] human gut metagenome; human gut
178
254
+
Arg
TCT
[ENA]
¡û
>WENV180302531
OBJF01002401
[OBJF] human gut metagenome; feces
354
278
-
Arg
TCT
[ENA]
¡û
>WENV180328198
OBKU01002727
[OBKU] human gut metagenome; human gut
383
307
-
Arg
TCT
[ENA]
¡û
>WENV180463463
OBYC01001124
[OBYC] human gut metagenome; faeces
10945
11021
+
Arg
TCT
[ENA]
¡û
>WENV180468086
OBYJ01000359
[OBYJ] human gut metagenome; faeces
21944
21868
-
Arg
TCT
[ENA]
¡û
>WENV180505745
OCAQ01004311
[OCAQ] human gut metagenome; faeces
1597
1675
+
Arg
TCT
[ENA]
¡û
>WENV180520474
OCHE01082018
[OCHE] human gut metagenome; human gut
101
177
+
Arg
TCT
[ENA]
¡û
>WENV180528308
OCHJ01002745
[OCHJ] human gut metagenome; human gut
6724
6800
+
Arg
TCT
[ENA]
¡û
>WENV180545105
OCIS01039884
[OCIS] human gut metagenome; human gut
178
254
+
Arg
TCT
[ENA]
¡û
>WENV180568265
OCLM01073986
[OCLM] human gut metagenome; human gut
137
213
+
Arg
TCT
[ENA]
¡û
>WENV180608042
OCPU01009259
[OCPU] human gut metagenome; human gut
1242
1318
+
Arg
TCT
[ENA]
¡û
>WENV180609733
OCPV01010255
[OCPV] human gut metagenome; human gut
259
183
-
Arg
TCT
[ENA]
¡û
>WENV180621615
OCQC01003203
[OCQC] human gut metagenome; human gut
6725
6801
+
Arg
TCT
[ENA]
¡û
>WENV180623482
OCQE01061026
[OCQE] human gut metagenome; human gut
224
148
-
Arg
TCT
[ENA]
¡û
>WENV180624455
OCQH01053558
[OCQH] human gut metagenome; human gut
223
299
+
Arg
TCT
[ENA]
¡û
>WENV180628966
OCQP01011318
[OCQP] human gut metagenome; human gut
1705
1629
-
Arg
TCT
[ENA]
¡û
>WENV180646563
OCSH01002920
[OCSH] human gut metagenome; human gut
6828
6904
+
Arg
TCT
[ENA]
¡û
>WENV180699564
ODDM01001773
[ODDM] human metagenome; G_DNA_Stool
463
387
-
Arg
TCT
[ENA]
¡û
>WENV180715922
ODFW01082450
[ODFW] human metagenome; G_DNA_Stool
265
341
+
Arg
TCT
[ENA]
¡û
>WENV180872446
ODLO01023469
[ODLO] human metagenome; G_DNA_Stool
237
161
-
Arg
TCT
[ENA]
¡û
>WENV180995373
ODVR01001733
[ODVR] human metagenome; G_DNA_Stool
11686
11762
+
Arg
TCT
[ENA]
¡û
>WENV181028814
ODXE01016336
[ODXE] human metagenome; G_DNA_Stool
384
308
-
Arg
TCT
[ENA]
¡û
>WENV181100730
OECJ01002312
[OECJ] human metagenome; G_DNA_Stool
2813
2889
+
Arg
TCT
[ENA]
¡û
>WENV181251352
OFFO01003838
[OFFO] mouse gut metagenome; faeces
269
193
-
Arg
TCT
[ENA]
¡û
>WENV181433483
OGDE01008708
[OGDE] metagenome; Human gut stool
2556
2480
-
Arg
TCT
[ENA]
¡û
>WENV181448381
OGDW01000118
[OGDW] metagenome; Human gut stool
73938
73862
-
Arg
TCT
[ENA]
¡û
>WENV181474064
OGFC01001461
[OGFC] metagenome; Human gut stool
262
186
-
Arg
TCT
[ENA]
¡û
>WENV181490663
OGFW01008885
[OGFW] metagenome; Human gut stool
842
918
+
Arg
TCT
[ENA]
¡û
>WENV181516429
OGGX01016516
[OGGX] metagenome; Human gut stool
346
422
+
Arg
TCT
[ENA]
¡û
>WENV181535543
OGHU01050034
[OGHU] metagenome; Human gut stool
453
529
+
Arg
TCT
[ENA]
¡û
>WENV181565022
OGJI01000060
[OGJI] metagenome; Human gut stool
399
475
+
Arg
TCT
[ENA]
¡û
>WENV181594947
OGKW01000118
[OGKW] metagenome; Human gut stool
73938
73862
-
Arg
TCT
[ENA]
¡û
>WENV181680703
OGOT01000301
[OGOT] human gut metagenome; faeces
35067
34991
-
Arg
TCT
[ENA]
¡û
>WENV181755172
OGQS01000885
[OGQS] human gut metagenome; faeces
292
216
-
Arg
TCT
[ENA]
¡û
>WENV181782325
OGRK01008339
[OGRK] human gut metagenome; faeces
3130
3206
+
Arg
TCT
[ENA]
¡û
>WENV181963964
OGZQ01002229
[OGZQ] human gut metagenome; faeces
1491
1567
+
Arg
TCT
[ENA]
¡û
>WENV181978318
OHAE01008306
[OHAE] human gut metagenome; faeces
1835
1911
+
Arg
TCT
[ENA]
¡û
>WENV182036676
OHDC01004587
[OHDC] human gut metagenome; feces
181
105
-
Arg
TCT
[ENA]
¡û
>WENV182090813
OHHC01018132
[OHHC] human gut metagenome; feces
251
175
-
Arg
TCT
[ENA]
¡û
>WENV182188290
OHOM01001208
[OHOM] human gut metagenome; feces
4350
4274
-
Arg
TCT
[ENA]
¡û
>WENV182263568
OHTT01001009
[OHTT] human gut metagenome; feces
6789
6865
+
Arg
TCT
[ENA]
¡û
>WENV182633943
OJKY01003270
[OJKY] metagenome; faeces
6797
6873
+
Arg
TCT
[ENA]
¡û
>WENV182657525
OJMK01003421
[OJMK] human gut metagenome; feces
6435
6359
-
Arg
TCT
[ENA]
¡û
>WENV182724595
OJPS01011752
[OJPS] human gut metagenome; stool sample
2972
3048
+
Arg
TCT
[ENA]
¡û
>WENV182758332
OJRI01001304
[OJRI] human gut metagenome; stool sample
2394
2318
-
Arg
TCT
[ENA]
¡û
>WENV182973164
OKXJ01021464
[OKXJ] human gut metagenome; human gut
164
88
-
Arg
TCT
[ENA]
¡û
>WENV182987154
OLAB01002035
[OLAB] human gut metagenome; human gut
904
980
+
Arg
TCT
[ENA]
¡û
>WENV183051909
OLGJ01007003
[OLGJ] human gut metagenome; faeces
2462
2538
+
Arg
TCT
[ENA]
¡û
>WENV183063804
OLIH01000128
[OLIH] metagenome; faeces
669
593
-
Arg
TCT
[ENA]
¡û
>WENV183067248
OLIL01023023
[OLIL] metagenome; faeces
346
422
+
Arg
TCT
[ENA]
¡û
>WENV183077698
OLIW01094852
[OLIW] human gut metagenome; feces
51
127
+
Arg
TCT
[ENA]
¡û
>WENV183111576
OLNO01031499
[OLNO] human gut metagenome; faeces
1228
1304
+
Arg
TCT
[ENA]
¡û
>WENV183318760
OLVU01008996
[OLVU] human gut metagenome; faeces
229
153
-
Arg
TCT
[ENA]
¡û
>WENV183392594
OLZE01022295
[OLZE] human gut metagenome; feces
807
883
+
Arg
TCT
[ENA]
¡û
>WENV183491373
OMGG01003301
[OMGG] human gut metagenome; human gut
262
186
-
Arg
TCT
[ENA]
¡û
>WENV183492226
OMGH01005009
[OMGH] human gut metagenome; human gut
198
122
-
Arg
TCT
[ENA]
¡û
>WENV183545439
OOAQ01003537
[OOAQ] human gut metagenome; human gut
5243
5167
-
Arg
TCT
[ENA]
¡û
>WENV183549443
OOAZ01001449
[OOAZ] human gut metagenome; human gut
2461
2385
-
Arg
TCT
[ENA]
¡û
>WENV183560776
OOBU01000752
[OOBU] human gut metagenome; human gut
905
981
+
Arg
TCT
[ENA]
¡û
>WENV183570436
OOCD01001341
[OOCD] human gut metagenome; human gut
11587
11511
-
Arg
TCT
[ENA]
¡û
>WENV183571568
OOCE01011064
[OOCE] human gut metagenome; human gut
1485
1561
+
Arg
TCT
[ENA]
¡û
>WENV183573001
OOCG01001269
[OOCG] human gut metagenome; human gut
11792
11868
+
Arg
TCT
[ENA]
¡û
>WENV183576985
OOCJ01004201
[OOCJ] human gut metagenome; human gut
1697
1773
+
Arg
TCT
[ENA]
¡û
>WENV183580234
OOCM01035889
[OOCM] human gut metagenome; human gut
418
494
+
Arg
TCT
[ENA]
¡û
>WENV183590568
OOCX01000936
[OOCX] human gut metagenome; human gut
19797
19721
-
Arg
TCT
[ENA]
¡û
>WENV183591848
OOCY01001352
[OOCY] human gut metagenome; human gut
263
187
-
Arg
TCT
[ENA]
¡û
>WENV183594939
OODC01000663
[OODC] human gut metagenome; human gut
355
431
+
Arg
TCT
[ENA]
¡û
>WENV183597706
OODF01002659
[OODF] human gut metagenome; human gut
3745
3821
+
Arg
TCT
[ENA]
¡û
>WENV183605367
OODM01001909
[OODM] human gut metagenome; human gut
406
330
-
Arg
TCT
[ENA]
¡û
>WENV183607516
OODO01011131
[OODO] human gut metagenome; human gut
2263
2187
-
Arg
TCT
[ENA]
¡û
>WENV183608312
OODP01005471
[OODP] human gut metagenome; human gut
2848
2924
+
Arg
TCT
[ENA]
¡û
>WENV183609012
OODQ01000775
[OODQ] human gut metagenome; human gut
7178
7254
+
Arg
TCT
[ENA]
¡û
>WENV183772532
PPYF01017251
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1937
1861
-
Arg
TCT
[ENA]
¡û
>WENV183774611
PPYF01043209
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2181
2257
+
Arg
TCT
[ENA]
¡û
>WENV183776905
PPYF01100074
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2169
2093
-
Arg
TCT
[ENA]
¡û
>WENV183780789
PPYF01182072
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1273
1349
+
Arg
TCT
[ENA]
¡û
>WENV183781483
PPYF01196867
[PPYF] human gut metagenome; stool from patient with Crohn's disease
7540
7616
+
Arg
TCT
[ENA]
¡û
>WENV183783317
PPYF01226185
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2919
2995
+
Arg
TCT
[ENA]
¡û
>WENV183788895
PPYF01370976
[PPYF] human gut metagenome; stool from patient with Crohn's disease
13067
13143
+
Arg
TCT
[ENA]
¡û
>WENV183790729
PPYF01421221
[PPYF] human gut metagenome; stool from patient with Crohn's disease
6746
6822
+
Arg
TCT
[ENA]
¡û
>WENV170036362
CDYN01012554
[CDYN] gut metagenome; human stools
6770
6846
+
Arg
TCT
[ENA]
¡û
>WENV170045175
CDYX01031083
[CDYX] gut metagenome; human stools
3831
3755
-
Arg
TCT
[ENA]
¡û
>WENV170067930
CDZO01029314
[CDZO] gut metagenome; human stools
246
170
-
Arg
TCT
[ENA]
¡û
>WENV170074134
CDZS01041630
[CDZS] gut metagenome; human stools
178
102
-
Arg
TCT
[ENA]
¡û
>WENV170652616
JRYH01009172
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
2954
3030
+
Arg
TCT
[ENA]
¡û
>W2010262425
CABKMT020000004
Betaproteobacteria
Sutterellaceae bacterium [CABKMT]
127640
127716
+
Arg
TCT
[ENA]
¡û
>W2012384975
WMTR01000063
Bacillota
Turicibacter sanguinis BIOML-A95 [WMTR]
2496
2572
+
Arg
TCT
[ENA]
¡û
>W2012395171
WNCC01000010
Betaproteobacteria
Parasutterella excrementihominis BIOML-A11 [WNCC]
290
214
-
Arg
TCT
[ENA]
¡û
>W2012395313
WNCE01000010
Betaproteobacteria
Parasutterella excrementihominis BIOML-A9 [WNCE]
290
214
-
Arg
TCT
[ENA]
¡û
>W2012395380
WNCF01000010
Betaproteobacteria
Parasutterella excrementihominis BIOML-A8 [WNCF]
290
214
-
Arg
TCT
[ENA]
¡û
>W2012395506
WNCH01000008
Betaproteobacteria
Parasutterella excrementihominis BIOML-A6 [WNCH]
128021
128097
+
Arg
TCT
[ENA]
¡û
>W2012395708
WNCK01000009
Betaproteobacteria
Parasutterella excrementihominis BIOML-A3 [WNCK]
290
214
-
Arg
TCT
[ENA]
¡û
>W10110966
ADCQ01000009
Betaproteobacteria
Burkholderiales bacterium 1_1_47 [ADCQ]
33258
33334
+
Arg
TCT
[ENA]
¡û
>W11113630
ADCQ01000009
Betaproteobacteria
Burkholderiales bacterium 1_1_47 [ADCQ]
33258
33334
+
Arg
TCT
[ENA]
¡û
>W1511580640
LARN01000066
Gammaproteobacteria
Acinetobacter sp. N54.MGS-139 [LARN]
6773
6849
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK