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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238495 (87 seq.)
>W1710979257
LPNV01000030
Bacillota
Lacticaseibacillus rhamnosus [LPNV]
72008
71936
-
Undet
???
[ENA]
¡û
>W1711113100
LTXZ01000032
Bacillota
Lactobacillus sp. HMSC061B07 [LTXZ]
4887
4959
+
Undet
???
[ENA]
¡û
>W1711517872
MLKA01000019
Bacillota
Lacticaseibacillus rhamnosus [MLKA]
25847
25775
-
Undet
???
[ENA]
¡û
>W1711517924
MLKB01000027
Bacillota
Lacticaseibacillus rhamnosus [MLKB]
25845
25773
-
Undet
???
[ENA]
¡û
>W1711721952
MTJY01000037
Bacillota
Lacticaseibacillus rhamnosus [MTJY]
27794
27722
-
Undet
???
[ENA]
¡û
>W1711798463
MWVF01000001
Bacillota
Lacticaseibacillus rhamnosus [MWVF]
24044
23972
-
Undet
???
[ENA]
¡û
>W131204261
ATBI01000007
Bacillota
Lacticaseibacillus rhamnosus CRL1505 [ATBI]
73428
73356
-
Undet
???
[ENA]
¡û
>WENV180137998
OATP01002542
[OATP] human gut metagenome; faeces
1063
991
-
Phe
AAA
[ENA]
¢þ
>WENV180177867
OAWF01001856
[OAWF] human gut metagenome; faeces
1063
991
-
Phe
AAA
[ENA]
¢þ
>WENV180181791
OAWN01001238
[OAWN] human gut metagenome; faeces
1063
991
-
Phe
AAA
[ENA]
¢þ
>WENV180408702
OBUT01000029
[OBUT] human gut metagenome; faeces
84657
84729
+
Phe
AAA
[ENA]
¢þ
>WENV180409839
OBUW01000016
[OBUW] human gut metagenome; faeces
53032
52960
-
Phe
AAA
[ENA]
¢þ
>WENV180419987
OBVO01000180
[OBVO] human gut metagenome; faeces
1462
1534
+
Phe
AAA
[ENA]
¢þ
>WENV180428038
OBWB01003326
[OBWB] human gut metagenome; faeces
1053
1125
+
Phe
AAA
[ENA]
¢þ
>WENV180431737
OBWH01003667
[OBWH] human gut metagenome; faeces
1265
1337
+
Phe
AAA
[ENA]
¢þ
>WENV180432613
OBWI01012252
[OBWI] human gut metagenome; faeces
902
830
-
Phe
AAA
[ENA]
¢þ
>WENV180448264
OBXE01003303
[OBXE] human gut metagenome; faeces
1015
1087
+
Phe
AAA
[ENA]
¢þ
>WENV180452882
OBXK01000692
[OBXK] human gut metagenome; faeces
1063
991
-
Phe
AAA
[ENA]
¢þ
>WENV180478393
OBZB01000998
[OBZB] human gut metagenome; faeces
909
981
+
Phe
AAA
[ENA]
¢þ
>WENV180483800
OBZH01002759
[OBZH] human gut metagenome; faeces
1063
991
-
Phe
AAA
[ENA]
¢þ
>WENV180598478
OCPM01002351
[OCPM] human gut metagenome; faeces
47
119
+
Phe
AAA
[ENA]
¢þ
>W141096325
AVFG02000065
Bacillota
Lacticaseibacillus rhamnosus 2166 [AVFG]
40378
40306
-
Undet
???
[ENA]
¡û
>W141228214
BALT01000025
Bacillota
Lacticaseibacillus rhamnosus JCM 1136 [BALT]
30242
30314
+
Undet
???
[ENA]
¡û
>WENV182830554
OKDZ01000182
[OKDZ] human gut metagenome; human gut
1906
1978
+
Phe
AAA
[ENA]
¢þ
>WENV182832124
OKEJ01005572
[OKEJ] human gut metagenome; human gut
238
310
+
Phe
AAA
[ENA]
¢þ
>WENV182860273
OKOR01001299
[OKOR] human gut metagenome; human gut
1906
1978
+
Phe
AAA
[ENA]
¢þ
>WENV183105108
OLNK01009592
[OLNK] human gut metagenome; faeces
1131
1059
-
Phe
AAA
[ENA]
¢þ
>WENV183108061
OLNM01047393
[OLNM] human gut metagenome; faeces
826
754
-
Phe
AAA
[ENA]
¢þ
>WENV183121800
OLNV01003144
[OLNV] human gut metagenome; faeces
1653
1725
+
Phe
AAA
[ENA]
¢þ
>WENV183171165
OLPB01027199
[OLPB] human gut metagenome; faeces
257
185
-
Phe
AAA
[ENA]
¢þ
>WENV183173552
OLPD01011480
[OLPD] human gut metagenome; faeces
946
1018
+
Phe
AAA
[ENA]
¢þ
>C181037381
CP019305
Bacillota
Lacticaseibacillus rhamnosus SCT-10-10-60 [CP019305]
1972082
1972010
-
Phe
AAA
-
¡û
>C191019482
CP022109
Bacillota
Lacticaseibacillus rhamnosus ATCC 11443 [CP022109]
1972089
1972017
-
Phe
AAA
-
¡û
>C191206566
LR134322
Bacillota
Lacticaseibacillus rhamnosus NCTC13710 [LR134322]
1974377
1974305
-
Phe
AAA
-
¡û
>C191207120
LR134331
Bacillota
Lacticaseibacillus rhamnosus NCTC13764 [LR134331]
1972899
1972827
-
Phe
AAA
-
¡û
>W09126010
ACIZ01000101
Bacillota
Lacticaseibacillus rhamnosus LMS2-1 [ACIZ]
17897
17969
+
Phe
AAA
[ENA]
¡û
>W141713209
JMSI01000008
Bacillota
Lacticaseibacillus rhamnosus 51B [JMSI]
71646
71574
-
Undet
???
[ENA]
¡û
>W1911532132
OGTX02000208
Bacillota
Lacticaseibacillus rhamnosus [OGTX]
12026
12098
+
Phe
AAA
[ENA]
¡û
>W1911718191
QQWF01000001
Bacillota
Lacticaseibacillus rhamnosus NRRL B-442 [QQWF]
338236
338308
+
Phe
AAA
[ENA]
¡û
>W1810084902
PESP01000002
Bacillota
Lacticaseibacillus rhamnosus GR-1 [PESP]
323226
323298
+
Phe
AAA
[ENA]
¡û
>W1810195019
PKQF01000001
Bacillota
Lacticaseibacillus rhamnosus NRRL B-442 [PKQF]
338112
338184
+
Phe
AAA
[ENA]
¡û
>W1810472503
QAGW01000004
Bacillota
Lacticaseibacillus rhamnosus DS17_11 [QAGW]
131758
131830
+
Phe
AAA
[ENA]
¡û
>W1810472560
QAGX01000004
Bacillota
Lacticaseibacillus rhamnosus DS22_11 [QAGX]
131758
131830
+
Phe
AAA
[ENA]
¡û
>W1810472661
QAGZ01000002
Bacillota
Lacticaseibacillus rhamnosus DS15_11 [QAGZ]
312069
312141
+
Phe
AAA
[ENA]
¡û
>W1810472709
QAHA01000001
Bacillota
Lacticaseibacillus rhamnosus DS14_11 [QAHA]
338236
338308
+
Phe
AAA
[ENA]
¡û
>W1810488472
QAZK01000001
Bacillota
Lacticaseibacillus rhamnosus DS13_11 [QAZK]
25890
25818
-
Phe
AAA
[ENA]
¡û
>W1810586861
QFFQ01000015
Bacillota
Lacticaseibacillus rhamnosus LR863 [QFFQ]
7069
7141
+
Phe
AAA
[ENA]
¡û
>W1810586916
QFFR01000015
Bacillota
Lacticaseibacillus rhamnosus TMC3115 [QFFR]
7069
7141
+
Phe
AAA
[ENA]
¡û
>C10108999
FM179323
Bacillota
Lacticaseibacillus rhamnosus Lc 705 [FM179323]
1969041
1968969
-
Phe
AAA
[Ensembl]
¡û
>W1511435107
JUIJ01000079
Bacillota
Lacticaseibacillus rhamnosus Lr053 [JUIJ]
1082
1154
+
Phe
AAA
[ENA]
¡û
>W1511435154
JUIK01000301
Bacillota
Lacticaseibacillus rhamnosus Lr073 [JUIK]
4712
4640
-
Phe
AAA
[ENA]
¡û
>W1511437348
JUKV01000074
Bacillota
Lacticaseibacillus rhamnosus 988_LRHA [JUKV]
6961
7033
+
Phe
AAA
[ENA]
¡û
>W1511438648
JUMP01000160
Bacillota
Lacticaseibacillus rhamnosus 943_LRHA [JUMP]
30155
30083
-
Phe
AAA
[ENA]
¡û
>W1511439957
JUON01000126
Bacillota
Lacticaseibacillus rhamnosus 906_LRHA [JUON]
42180
42108
-
Phe
AAA
[ENA]
¡û
>W1511440981
JUPX01000215
Bacillota
Lacticaseibacillus rhamnosus 870_LRHA [JUPX]
8860
8788
-
Phe
AAA
[ENA]
¡û
>W1511444203
JUTS01000089
Bacillota
Lacticaseibacillus rhamnosus 769_LRHA [JUTS]
64328
64256
-
Phe
AAA
[ENA]
¡û
>W1511451325
JVCX01000043
Bacillota
Lacticaseibacillus rhamnosus 541_LRHA [JVCX]
8053
8125
+
Phe
AAA
[ENA]
¡û
>W1511451957
JVDP01000029
Bacillota
Lacticaseibacillus rhamnosus 526_LRHA [JVDP]
7924
7996
+
Phe
AAA
[ENA]
¡û
>W11176923
AFYD01000141
Bacillota
Lacticaseibacillus rhamnosus CASL [AFYD]
5302
5230
-
Phe
AAA
[ENA]
¡û
>C161075066
CP014645
Bacillota
Lacticaseibacillus rhamnosus ASCC 290 [CP014645]
1701289
1701217
-
Undet
???
-
¡û
>W1610030513
AYTQ01000033
Bacillota
Lacticaseibacillus rhamnosus L31 [AYTQ]
25041
24969
-
Undet
???
[ENA]
¡û
>W1610033029
AZCQ01000003
Bacillota
Lacticaseibacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425 [AZCQ]
180591
180663
+
Undet
???
[ENA]
¡û
>C131015505
CP005485
Bacillota
Lacticaseibacillus rhamnosus LOCK908 [CP005485]
1974232
1974160
-
Phe
AAA
[Ensembl]
¡û
>W1610543715
JTHY01000055
Bacillota
Lacticaseibacillus rhamnosus [JTHY]
4860
4932
+
Undet
???
[ENA]
¡û
>W1610543906
JTID01000020
Bacillota
Lacticaseibacillus rhamnosus [JTID]
17954
18026
+
Undet
???
[ENA]
¡û
>W1610543985
JTIE01000081
Bacillota
Lacticaseibacillus rhamnosus [JTIE]
5947
5875
-
Undet
???
[ENA]
¡û
>W1610544036
JTIF01000276
Bacillota
Lacticaseibacillus rhamnosus [JTIF]
6238
6310
+
Undet
???
[ENA]
¡û
>W1610544093
JTIG01000039
Bacillota
Lacticaseibacillus rhamnosus [JTIG]
938
866
-
Undet
???
[ENA]
¡û
>W1610544174
JTII01000024
Bacillota
Lacticaseibacillus rhamnosus [JTII]
34077
34149
+
Undet
???
[ENA]
¡û
>W1610544230
JTIJ01000029
Bacillota
Lacticaseibacillus rhamnosus [JTIJ]
935
863
-
Undet
???
[ENA]
¡û
>W1610544515
JTIP01000054
Bacillota
Lacticaseibacillus rhamnosus [JTIP]
6226
6154
-
Undet
???
[ENA]
¡û
>W1610544647
JTIS01000122
Bacillota
Lacticaseibacillus rhamnosus [JTIS]
1374
1446
+
Undet
???
[ENA]
¡û
>W1610547329
JUIP01000027
Bacillota
Lacticaseibacillus rhamnosus [JUIP]
34094
34166
+
Undet
???
[ENA]
¡û
>W1610547431
JUIR01000368
Bacillota
Lacticaseibacillus rhamnosus [JUIR]
406
478
+
Undet
???
[ENA]
¡û
>W1710027636
AYTQ01000033
Bacillota
Lacticaseibacillus rhamnosus L31 [AYTQ]
25041
24969
-
Undet
???
[ENA]
¡û
>W1710030301
AZCQ01000003
Bacillota
Lacticaseibacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425 [AZCQ]
180591
180663
+
Undet
???
[ENA]
¡û
>W1710646846
JTHY01000055
Bacillota
Lacticaseibacillus rhamnosus [JTHY]
4860
4932
+
Undet
???
[ENA]
¡û
>W1710647037
JTID01000020
Bacillota
Lacticaseibacillus rhamnosus [JTID]
17954
18026
+
Undet
???
[ENA]
¡û
>W1710647116
JTIE01000081
Bacillota
Lacticaseibacillus rhamnosus [JTIE]
5947
5875
-
Undet
???
[ENA]
¡û
>W1710647167
JTIF01000276
Bacillota
Lacticaseibacillus rhamnosus [JTIF]
6238
6310
+
Undet
???
[ENA]
¡û
>W1710647224
JTIG01000039
Bacillota
Lacticaseibacillus rhamnosus [JTIG]
938
866
-
Undet
???
[ENA]
¡û
>W1710647305
JTII01000024
Bacillota
Lacticaseibacillus rhamnosus [JTII]
34077
34149
+
Undet
???
[ENA]
¡û
>W1710647361
JTIJ01000029
Bacillota
Lacticaseibacillus rhamnosus [JTIJ]
935
863
-
Undet
???
[ENA]
¡û
>W1710647646
JTIP01000054
Bacillota
Lacticaseibacillus rhamnosus [JTIP]
6226
6154
-
Undet
???
[ENA]
¡û
>W1710647778
JTIS01000122
Bacillota
Lacticaseibacillus rhamnosus [JTIS]
1374
1446
+
Undet
???
[ENA]
¡û
>W1710650512
JUIP01000027
Bacillota
Lacticaseibacillus rhamnosus [JUIP]
34094
34166
+
Undet
???
[ENA]
¡û
>W1710650614
JUIR01000368
Bacillota
Lacticaseibacillus rhamnosus [JUIR]
406
478
+
Undet
???
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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