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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238499 (117 seq.)
>W1711227967
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
212815
212890
+
Val
TAC
[ENA]
¡û
>W1711227968
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
212925
213000
+
Val
TAC
[ENA]
¡û
>W1711227970
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
213125
213200
+
Val
TAC
[ENA]
¡û
>W1711229537
LXYN01000023
Gammaproteobacteria
Marinobacter sp. EhN04 [LXYN]
260773
260848
+
Val
TAC
[ENA]
¡û
>W1711229539
LXYN01000023
Gammaproteobacteria
Marinobacter sp. EhN04 [LXYN]
261016
261091
+
Val
TAC
[ENA]
¡û
>W131186724
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
249939
249864
-
Val
TAC
[ENA]
¡û
>W131186726
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
249671
249596
-
Val
TAC
[ENA]
¡û
>C171016797
CP012418
Gammaproteobacteria
Kangiella sediminilitoris KCTC 23892 [CP012418]
661827
661902
+
Val
TAC
-
¡û
>C171016830
CP012418
Gammaproteobacteria
Kangiella sediminilitoris KCTC 23892 [CP012418]
1095395
1095320
-
Val
TAC
-
¡û
>W131169958
ARFE01000002
Gammaproteobacteria
Kangiella aquimarina DSM 16071 [ARFE]
836912
836987
+
Val
TAC
[ENA]
¡û
>W131169976
ARFE01000002
Gammaproteobacteria
Kangiella aquimarina DSM 16071 [ARFE]
1307724
1307649
-
Val
TAC
[ENA]
¡û
>W131171024
ARFX01000032
Gammaproteobacteria
Algicola sagamiensis DSM 14643 [ARFX]
100905
100830
-
Val
TAC
[ENA]
¡û
>W131171026
ARFX01000032
Gammaproteobacteria
Algicola sagamiensis DSM 14643 [ARFX]
100721
100646
-
Val
TAC
[ENA]
¡û
>WENV180104459
OAPC01009896
[OAPC] marine metagenome; na
232
157
-
Val
TAC
[ENA]
¢þ
>WENV180346543
OBLN01149624
[OBLN] sediment metagenome; sediment
277
352
+
Val
TAC
[ENA]
¢þ
>WENV181233559
OFET01000007
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
402135
402060
-
Val
TAC
[ENA]
¢þ
>WENV181321392
OFKM01000028
[OFKM] marine metagenome; sea ice
3379
3304
-
Val
TAC
[ENA]
¢þ
>WENV182540767
OJAP01007464
[OJAP] seawater metagenome; Sea water
77
152
+
Val
TAC
[ENA]
¢þ
>WENV182541647
OJAU01000259
[OJAU] seawater metagenome; Sea water
3287
3362
+
Val
TAC
[ENA]
¢þ
>WENV182542453
OJAY01001447
[OJAY] seawater metagenome; Sea water
4016
4091
+
Val
TAC
[ENA]
¢þ
>WENV182542759
OJAZ01001726
[OJAZ] seawater metagenome; Sea water
3287
3362
+
Val
TAC
[ENA]
¢þ
>WENV182543497
OJBB01001240
[OJBB] seawater metagenome; Sea water
621
546
-
Val
TAC
[ENA]
¢þ
>WENV182546739
OJBP01001784
[OJBP] seawater metagenome; Sea water
3146
3071
-
Val
TAC
[ENA]
¢þ
>WENV182547333
OJBS01000490
[OJBS] seawater metagenome; Sea water
3712
3637
-
Val
TAC
[ENA]
¢þ
>WENV182549193
OJBX01039880
[OJBX] seawater metagenome; Sea water
93
168
+
Val
TAC
[ENA]
¢þ
>WENV182554993
OJCY01000279
[OJCY] seawater metagenome; Sea water
12810
12885
+
Val
TAC
[ENA]
¢þ
>WENV182555490
OJDA01005573
[OJDA] seawater metagenome; Sea water
105
180
+
Val
TAC
[ENA]
¢þ
>WENV182555910
OJDD01009407
[OJDD] seawater metagenome; Sea water
849
774
-
Val
TAC
[ENA]
¢þ
>WENV182557541
OJDK01000135
[OJDK] seawater metagenome; Sea water
46962
47037
+
Val
TAC
[ENA]
¢þ
>WENV182558790
OJDN01003619
[OJDN] seawater metagenome; Sea water
1830
1905
+
Val
TAC
[ENA]
¢þ
>WENV182561508
OJDW01000614
[OJDW] seawater metagenome; Sea water
1121
1196
+
Val
TAC
[ENA]
¢þ
>WENV182567476
OJEO01001904
[OJEO] seawater metagenome; Sea water
3146
3071
-
Val
TAC
[ENA]
¢þ
>WENV182567884
OJEP01001476
[OJEP] seawater metagenome; Sea water
1188
1113
-
Val
TAC
[ENA]
¢þ
>WENV182568882
OJEX01000468
[OJEX] seawater metagenome; Sea water
3287
3362
+
Val
TAC
[ENA]
¢þ
>WENV182572017
OJFL01000075
[OJFL] seawater metagenome; Sea water
3146
3071
-
Val
TAC
[ENA]
¢þ
>WENV182573486
OJFP01002468
[OJFP] seawater metagenome; Sea water
3146
3071
-
Val
TAC
[ENA]
¢þ
>WENV182578528
OJGO01000581
[OJGO] seawater metagenome; Sea water
9556
9481
-
Val
TAC
[ENA]
¢þ
>WENV182578730
OJGP01000821
[OJGP] seawater metagenome; Sea water
4727
4802
+
Val
TAC
[ENA]
¢þ
>WENV182583707
OJHE01000414
[OJHE] seawater metagenome; Sea water
3287
3362
+
Val
TAC
[ENA]
¢þ
>WENV182584403
OJHG01000171
[OJHG] seawater metagenome; Sea water
5241
5166
-
Val
TAC
[ENA]
¢þ
>WENV182585692
OJHI01000953
[OJHI] seawater metagenome; Sea water
3146
3071
-
Val
TAC
[ENA]
¢þ
>WENV182586092
OJHJ01001098
[OJHJ] seawater metagenome; Sea water
3287
3362
+
Val
TAC
[ENA]
¢þ
>WENV182586657
OJHK01002660
[OJHK] seawater metagenome; Sea water
3146
3071
-
Val
TAC
[ENA]
¢þ
>WENV182587904
OJHO01000068
[OJHO] seawater metagenome; Sea water
45431
45506
+
Val
TAC
[ENA]
¢þ
>WENV182591218
OJIL01001925
[OJIL] seawater metagenome; Sea water
3223
3148
-
Val
TAC
[ENA]
¢þ
>WENV182592985
OJIS01004118
[OJIS] seawater metagenome; Sea water
78
153
+
Val
TAC
[ENA]
¢þ
>WENV183054225
OLGS01002489
[OLGS] seawater metagenome; Sea water
1308
1233
-
Val
TAC
[ENA]
¢þ
>WENV183054722
OLGU01001897
[OLGU] seawater metagenome; Sea water
2791
2716
-
Val
TAC
[ENA]
¢þ
>WENV183055302
OLGX01001673
[OLGX] seawater metagenome; Sea water
3275
3350
+
Val
TAC
[ENA]
¢þ
>WENV183055441
OLHC01000325
[OLHC] seawater metagenome; Sea water
1768
1843
+
Val
TAC
[ENA]
¢þ
>WENV183057060
OLHK01001478
[OLHK] seawater metagenome; Sea water
4323
4248
-
Val
TAC
[ENA]
¢þ
>WENV183057423
OLHL01001845
[OLHL] seawater metagenome; Sea water
3287
3362
+
Val
TAC
[ENA]
¢þ
>WENV183522246
OMOM01001248
[OMOM] seawater metagenome; Sea water
3287
3362
+
Val
TAC
[ENA]
¢þ
>WENV170016362
AZIK01001216
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
2981
3056
+
Val
TAC
[ENA]
¢þ
>WENV170378619
CETV01034796
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
186
111
-
Val
TAC
[ENA]
¢þ
>WENV170647148
JQIA01013583
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
73
1
-
Val
TAC
[ENA]
¢þ
>WENV170673051
LAZR01004983
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
1070
995
-
Val
TAC
[ENA]
¢þ
>WENV170761071
LUMU01007106
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
1203
1128
-
Val
TAC
[ENA]
¢þ
>WENV170779584
LZQQ01000068
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
16688
16763
+
Val
TAC
[ENA]
¢þ
>WENV170781317
MAAB01032295
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
102483
102408
-
Val
TAC
[ENA]
¢þ
>WENV170781319
MAAB01032295
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
100814
100739
-
Val
TAC
[ENA]
¢þ
>WENV170781850
MAAC01002390
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7793
7868
+
Val
TAC
[ENA]
¢þ
>WENV170781878
MAAC01003139
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2163
2238
+
Val
TAC
[ENA]
¢þ
>WENV170782044
MAAC01006773
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
53
128
+
Val
TAC
[ENA]
¢þ
>WENV170783613
MAAC01018206
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
16961
16886
-
Val
TAC
[ENA]
¢þ
>W09109222
ABUB01000003
Gammaproteobacteria
Kangiella koreensis DSM 16069 [ABUB]
515102
515027
-
Val
TAC
[ENA]
¡û
>W09109232
ABUB01000007
Gammaproteobacteria
Kangiella koreensis DSM 16069 [ABUB]
141320
141395
+
Val
TAC
[ENA]
¡û
>WENV170932359
MDTG01201302
[MDTG] marine metagenome; seawater
222
147
-
Val
TAC
[ENA]
¢þ
>WENV170938907
MDTG01316904
[MDTG] marine metagenome; seawater
72
147
+
Val
TAC
[ENA]
¢þ
>WENV170964065
MRWG01002641
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1429
1502
+
Val
TAC
[ENA]
¢þ
>WENV170964514
MRWG01015596
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1648
1573
-
Val
TAC
[ENA]
¢þ
>WENV170964516
MRWG01015596
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1410
1335
-
Val
TAC
[ENA]
¢þ
>WENV170964843
MRWG01057080
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
74
1
-
Val
TAC
[ENA]
¢þ
>C181113445
CP025120
Gammaproteobacteria
Kangiella profundi FT102 [CP025120]
1482883
1482958
+
Val
TAC
-
¡û
>C181113452
CP025120
Gammaproteobacteria
Kangiella profundi FT102 [CP025120]
1944116
1944041
-
Val
TAC
-
¡û
>C181136190
CP026604
Gammaproteobacteria
Saccharobesus litoralis CCB-QB4 [CP026604]
4228091
4228166
+
Val
TAC
-
¡û
>C181136191
CP026604
Gammaproteobacteria
Saccharobesus litoralis CCB-QB4 [CP026604]
4228197
4228272
+
Val
TAC
-
¡û
>C181136192
CP026604
Gammaproteobacteria
Saccharobesus litoralis CCB-QB4 [CP026604]
4228304
4228379
+
Val
TAC
-
¡û
>C191084381
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
1305386
1305461
+
Val
TAC
-
¡û
>C191084383
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
1305592
1305667
+
Val
TAC
-
¡û
>C191180153
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
1168947
1169022
+
Val
TAC
-
¡û
>C191180155
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
1169214
1169289
+
Val
TAC
-
¡û
>W141806369
JPMC01000005
Gammaproteobacteria
Pseudoalteromonas sp. A2 [JPMC]
453
378
-
Val
TAC
[ENA]
¡û
>W1911584769
PIPK01000001
Gammaproteobacteria
Aliidiomarina maris CF12-14 [PIPK]
416874
416799
-
Val
TAC
[ENA]
¡û
>W1911584840
PIPL01000001
Gammaproteobacteria
Aliidiomarina minuta MLST1 [PIPL]
1116643
1116568
-
Val
TAC
[ENA]
¡û
>W1911584841
PIPL01000001
Gammaproteobacteria
Aliidiomarina minuta MLST1 [PIPL]
1116502
1116427
-
Val
TAC
[ENA]
¡û
>W1911584842
PIPL01000001
Gammaproteobacteria
Aliidiomarina minuta MLST1 [PIPL]
1116365
1116290
-
Val
TAC
[ENA]
¡û
>W1911717902
QQTG01000001
Gammaproteobacteria
Kangiella sp. HD9-110m-PIT-SAG07 [QQTG]
18775
18700
-
Val
TAC
[ENA]
¡û
>W1810628284
QICH01000001
Gammaproteobacteria
Kangiella spongicola ATCC BAA-2076 [QICH]
205719
205644
-
Val
TAC
[ENA]
¡û
>W1810628312
QICH01000003
Gammaproteobacteria
Kangiella spongicola ATCC BAA-2076 [QICH]
248243
248168
-
Val
TAC
[ENA]
¡û
>W1810694579
QLMD01000001
Gammaproteobacteria
Aliidiomarina maris CGMCC 1.15366 [QLMD]
417270
417195
-
Val
TAC
[ENA]
¡û
>W1810701320
QMED01000001
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
92725
92800
+
Val
TAC
[ENA]
¡û
>W1810701321
QMED01000001
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
92833
92908
+
Val
TAC
[ENA]
¡û
>W1810701322
QMED01000001
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
92949
93024
+
Val
TAC
[ENA]
¡û
>W1810725119
QOCH01000015
Gammaproteobacteria
Marinobacter sp. F3R11 [QOCH]
2638
2563
-
Val
TAC
[ENA]
¡û
>W1810725121
QOCH01000015
Gammaproteobacteria
Marinobacter sp. F3R11 [QOCH]
2409
2334
-
Val
TAC
[ENA]
¡û
>C151074700
CP010975
Gammaproteobacteria
Kangiella geojedonensis YCS-5 [CP010975]
634063
634138
+
Val
TAC
[Ensembl]
¡û
>C151074734
CP010975
Gammaproteobacteria
Kangiella geojedonensis YCS-5 [CP010975]
1103506
1103431
-
Val
TAC
[Ensembl]
¡û
>ENV09001716
ACQI01003520
Hydrothermal vent metagenome LCHCB.C1
41
116
+
Val
TAC
[ENA]
¡û
>ENV09001718
ACQI01003520
Hydrothermal vent metagenome LCHCB.C1
419
494
+
Val
TAC
[ENA]
¡û
>ENV09001766
ACQI01005275
Hydrothermal vent metagenome LCHCB.C1
32
107
+
Val
TAC
[ENA]
¡û
>ENV09001768
ACQI01005275
Hydrothermal vent metagenome LCHCB.C1
264
339
+
Val
TAC
[ENA]
¡û
>ENV09001790
ACQI01006182
Hydrothermal vent metagenome LCHCB.C1
571
646
+
Val
TAC
[ENA]
¡û
>C10108009
CP001707
Gammaproteobacteria
Kangiella koreensis DSM 16069 [CP001707]
1582393
1582468
+
Val
TAC
[Ensembl]
¡û
>C10108017
CP001707
Gammaproteobacteria
Kangiella koreensis DSM 16069 [CP001707]
2102842
2102767
-
Val
TAC
[Ensembl]
¡û
>W1511677323
LFBU01000001
Gammaproteobacteria
Marinobacter subterrani JG233 [LFBU]
1254819
1254744
-
Val
TAC
[ENA]
¡û
>W1511677325
LFBU01000001
Gammaproteobacteria
Marinobacter subterrani JG233 [LFBU]
1254591
1254516
-
Val
TAC
[ENA]
¡û
>C131005673
CP003735
Gammaproteobacteria
Marinobacter sp. BSs20148 [CP003735]
1022861
1022936
+
Val
TAC
[Ensembl]
¡û
>W1611011931
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
212815
212890
+
Val
TAC
[ENA]
¡û
>W1611011932
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
212925
213000
+
Val
TAC
[ENA]
¡û
>W1611011934
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
213125
213200
+
Val
TAC
[ENA]
¡û
>W1611013407
LXYN01000023
Gammaproteobacteria
Marinobacter sp. EhN04 [LXYN]
260773
260848
+
Val
TAC
[ENA]
¡û
>W1611013409
LXYN01000023
Gammaproteobacteria
Marinobacter sp. EhN04 [LXYN]
261016
261091
+
Val
TAC
[ENA]
¡û
>W1710528413
FNNE01000012
Gammaproteobacteria
Marinobacter mobilis [FNNE]
64364
64439
+
Val
TAC
[ENA]
¡û
>W1710560210
FONF01000005
Gammaproteobacteria
Marinobacter sp. DSM 26671 [FONF]
24158
24083
-
Val
TAC
[ENA]
¡û
>W1710560212
FONF01000005
Gammaproteobacteria
Marinobacter sp. DSM 26671 [FONF]
23916
23841
-
Val
TAC
[ENA]
¡û
>W1710569180
FOUE01000003
Gammaproteobacteria
Marinobacter zhejiangensis [FOUE]
573831
573906
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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