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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238515 (33 seq.)
>A171000259
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
860656
860729
+
Ala
TGC
-
¡û
>A171001538
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1575988
1576062
+
Ala
TGC
-
¡û
>A171002331
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
764087
764161
+
Ala
TGC
-
¡û
>A171002344
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
716916
716842
-
Ala
TGC
-
¡û
>A171002521
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
35396
35323
-
Ala
TGC
-
¡û
>WENV180274870
OBHO01000001
[OBHO] metagenome; water
689
615
-
Ala
TGC
[ENA]
¢þ
>WENV180287274
OBIK01008220
[OBIK] hydrothermal vent metagenome; sea water
640
566
-
Ala
TGC
[ENA]
¢þ
>WENV180316940
OBKJ01002394
[OBKJ] metagenome; hydrothermal vent
76
2
-
Ala
TGC
[ENA]
¢þ
>WENV180332358
OBLD01000669
[OBLD] metagenome; water
1052
1126
+
Ala
TGC
[ENA]
¢þ
>WENV180581481
OCMK01000072
[OCMK] metagenome; diffuse fluid
1800
1874
+
Ala
TGC
[ENA]
¢þ
>WENV180582069
OCMO01000030
[OCMO] metagenome; diffuse fluid
2242
2168
-
Ala
TGC
[ENA]
¢þ
>WENV181206222
OFAT01000638
[OFAT] metagenome; hydrothermal vent
1430
1356
-
Ala
TGC
[ENA]
¢þ
>WENV181206822
OFAW01011942
[OFAW] metagenome; hydrothermal vent
62
136
+
Ala
TGC
[ENA]
¢þ
>WENV181207284
OFAY01009426
[OFAY] metagenome; hydrothermal vent
703
777
+
Ala
TGC
[ENA]
¢þ
>WENV181207646
OFAZ01009479
[OFAZ] metagenome; hydrothermal vent
76
2
-
Ala
TGC
[ENA]
¢þ
>WENV181207894
OFBA01002050
[OFBA] metagenome; hydrothermal vent
106
180
+
Ala
TGC
[ENA]
¢þ
>WENV181208412
OFBB01009710
[OFBB] metagenome; hydrothermal vent
703
777
+
Ala
TGC
[ENA]
¢þ
>WENV181208764
OFBC01004464
[OFBC] metagenome; hydrothermal vent
106
180
+
Ala
TGC
[ENA]
¢þ
>WENV181214075
OFBW01009885
[OFBW] metagenome; hydrothermal vent
889
814
-
Ala
TGC
[ENA]
¢þ
>WENV181223951
OFDD01004477
[OFDD] metagenome; hydrothermal vent
106
180
+
Ala
TGC
[ENA]
¢þ
>WENV181224213
OFDE01001003
[OFDE] metagenome; hydrothermal vent
649
575
-
Ala
TGC
[ENA]
¢þ
>WENV181224416
OFDF01000517
[OFDF] metagenome; hydrothermal vent
2122
2048
-
Ala
TGC
[ENA]
¢þ
>WENV181224862
OFDG01011674
[OFDG] metagenome; hydrothermal vent
623
549
-
Ala
TGC
[ENA]
¢þ
>WENV181225390
OFDI01000654
[OFDI] metagenome; hydrothermal vent
2679
2753
+
Ala
TGC
[ENA]
¢þ
>At1033
CP000743
Euryarchaeota
Methanococcus aeolicus Nankai-3 [CP000743]
1194583
1194511
-
Ala
TGC
[Ensembl]
¡û
>At1054
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1595585
1595657
+
Ala
TGC
[Ensembl]
¡û
>At1114
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
996290
996218
-
Ala
TGC
[Ensembl]
¡û
>At1139
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
40430
40358
-
Ala
TGC
[Ensembl]
¡û
>At1171
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
1215120
1215192
+
Ala
TGC
[Ensembl]
¡û
>W1610000318
AAWI01000002
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
386617
386690
+
Ala
TGC
[ENA]
¡û
>W1610000379
AAWX01000004
Euryarchaeota
Methanococcus vannielii SB [AAWX]
157035
157108
+
Ala
TGC
[ENA]
¡û
>W1610000430
AAZL01000001
Euryarchaeota
Methanococcus aeolicus Nankai-3 [AAZL]
1566899
1566973
+
Ala
TGC
[ENA]
¡û
>W1610002145
AEDA01000012
Euryarchaeota
Methanothermococcus okinawensis IH1 [AEDA]
22814
22740
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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