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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238541 (8 seq.)
>WENV180593754
OCOX01182232
[OCOX] marine metagenome; ENVO:00002010
283
207
-
Met
CAT
[ENA]
¡û
>WENV182571866
OJFK01020821
[OJFK] seawater metagenome; Sea water
867
791
-
Met
CAT
[ENA]
¡û
>WENV183058766
OLHR01009291
[OLHR] seawater metagenome; Sea water
857
930
+
Met
CAT
[ENA]
¡û
>WENV183059549
OLHU01020153
[OLHU] seawater metagenome; Sea water
372
296
-
Met
CAT
[ENA]
¡û
>WENV170781489
MAAB01037765
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
203239
203163
-
Met
CAT
[ENA]
¡û
>WENV170781694
MAAB01041462
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
26909
26833
-
Met
CAT
[ENA]
¡û
>WENV170827887
MDSY01138339
[MDSY] marine metagenome; seawater
38328
38252
-
Met
CAT
[ENA]
¡û
>C241373860
CP143311
Gammaproteobacteria
Methylophaga thalassica IOM01 [CP143311]
365180
365256
+
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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