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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238561 (114 seq.)
>W1711168216
LVXF01000034
Campylobacterota
Campylobacter concisus [LVXF]
87711
87786
+
Glu
CTC
[ENA]
¡û
>W1711168224
LVXF01000040
Campylobacterota
Campylobacter concisus [LVXF]
108002
108077
+
Glu
CTC
[ENA]
¡û
>W1711350439
MCRK01000043
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum [MCRK]
67069
67144
+
Glu
CTC
[ENA]
¡û
>W1711350480
MCRL01000025
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum [MCRL]
39965
39890
-
Glu
CTC
[ENA]
¡û
>W1711351837
MDCT01000005
Campylobacterota
Campylobacter pinnipediorum RM18812 [MDCT]
66990
67065
+
Glu
CTC
[ENA]
¡û
>W1711351872
MDCU01000003
Campylobacterota
Campylobacter pinnipediorum RM18813 [MDCU]
31454
31379
-
Glu
CTC
[ENA]
¡û
>W1711351931
MDCV01000007
Campylobacterota
Campylobacter pinnipediorum RM18906 [MDCV]
35871
35796
-
Glu
CTC
[ENA]
¡û
>W1712001003
NDYR01000009
Campylobacterota
Campylobacter concisus [NDYR]
61784
61709
-
Glu
CTC
[ENA]
¡û
>W1712001021
NDYR01000019
Campylobacterota
Campylobacter concisus [NDYR]
41787
41862
+
Glu
CTC
[ENA]
¡û
>W1712001031
NDYR01000036
Campylobacterota
Campylobacter concisus [NDYR]
132
207
+
Glu
CTC
[ENA]
¡û
>C171017216
CP012546
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17260 [CP012546]
215291
215366
+
Glu
CTC
-
¡û
>C171017260
CP012547
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17261 [CP012547]
186081
186156
+
Glu
CTC
-
¡û
>C171017304
CP012548
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17262 [CP012548]
182112
182187
+
Glu
CTC
-
¡û
>C171055122
CP017018
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus M302/10/6 [CP017018]
185744
185819
+
Glu
CTC
-
¡û
>C171059623
CP017258
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus M341/11/05 [CP017258]
189972
190047
+
Glu
CTC
-
¡û
>WENV180241113
OBDF01027819
[OBDF] human oral metagenome; human oral
283
208
-
Glu
CTC
[ENA]
¢þ
>W141052972
ANNE01000048
Campylobacterota
Campylobacter concisus UNSW3 [ANNE]
176
101
-
Glu
CTC
[ENA]
¡û
>W141052975
ANNE01000056
Campylobacterota
Campylobacter concisus UNSW3 [ANNE]
176
101
-
Glu
CTC
[ENA]
¡û
>W141053129
ANNI01000021
Campylobacterota
Campylobacter concisus ATCC 51562 [ANNI]
92
167
+
Glu
CTC
[ENA]
¡û
>WENV180623876
OCQG01012460
[OCQG] human oral metagenome; human oral
142
217
+
Glu
CTC
[ENA]
¢þ
>WENV180705621
ODEJ01010791
[ODEJ] human metagenome; G_DNA_Tongue dorsum
1833
1758
-
Glu
CTC
[ENA]
¢þ
>WENV180726156
ODGS01041504
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
147
222
+
Glu
CTC
[ENA]
¢þ
>WENV180774367
ODIJ01019640
[ODIJ] human metagenome; G_DNA_Tongue dorsum
148
223
+
Glu
CTC
[ENA]
¢þ
>WENV180783137
ODIQ01002127
[ODIQ] human metagenome; G_DNA_Tongue dorsum
263
188
-
Glu
CTC
[ENA]
¢þ
>WENV180796478
ODJB01005334
[ODJB] human metagenome; G_DNA_Supragingival plaque
5176
5251
+
Glu
CTC
[ENA]
¢þ
>WENV180798016
ODJB01217190
[ODJB] human metagenome; G_DNA_Supragingival plaque
257
182
-
Glu
CTC
[ENA]
¢þ
>WENV180801627
ODJD01075746
[ODJD] human metagenome; G_DNA_Supragingival plaque
199
124
-
Glu
CTC
[ENA]
¢þ
>WENV180805153
ODJG01075302
[ODJG] human metagenome; G_DNA_Supragingival plaque
407
332
-
Glu
CTC
[ENA]
¢þ
>WENV180820089
ODJR01001799
[ODJR] human metagenome; G_DNA_Tongue dorsum
10978
11053
+
Glu
CTC
[ENA]
¢þ
>WENV180830665
ODKB01008827
[ODKB] human metagenome; G_DNA_Tongue dorsum
2593
2518
-
Glu
CTC
[ENA]
¢þ
>WENV180853360
ODKW01078531
[ODKW] human metagenome; G_DNA_Tongue dorsum
220
145
-
Glu
CTC
[ENA]
¢þ
>WENV180855370
ODKX01078029
[ODKX] human metagenome; G_DNA_Tongue dorsum
263
188
-
Glu
CTC
[ENA]
¢þ
>WENV180858328
ODLC01003345
[ODLC] human metagenome; G_DNA_Tongue dorsum
152
227
+
Glu
CTC
[ENA]
¢þ
>WENV180864588
ODLH01070465
[ODLH] human metagenome; G_DNA_Tongue dorsum
149
224
+
Glu
CTC
[ENA]
¢þ
>WENV180897554
ODNI01037711
[ODNI] human metagenome; G_DNA_Tongue dorsum
146
221
+
Glu
CTC
[ENA]
¢þ
>WENV180902327
ODOK01039143
[ODOK] human metagenome; G_DNA_Tongue dorsum
151
226
+
Glu
CTC
[ENA]
¢þ
>WENV180928453
ODTM01051855
[ODTM] human metagenome; G_DNA_Supragingival plaque
303
228
-
Glu
CTC
[ENA]
¢þ
>WENV180930027
ODTN01044359
[ODTN] human metagenome; G_DNA_Tongue dorsum
262
187
-
Glu
CTC
[ENA]
¢þ
>WENV180950138
ODUG01091697
[ODUG] human metagenome; G_DNA_Tongue dorsum
149
224
+
Glu
CTC
[ENA]
¢þ
>WENV180955188
ODUJ01042707
[ODUJ] human metagenome; G_DNA_Tongue dorsum
149
224
+
Glu
CTC
[ENA]
¢þ
>WENV180976100
ODUY01046319
[ODUY] human metagenome; G_DNA_Supragingival plaque
262
187
-
Glu
CTC
[ENA]
¢þ
>WENV180985941
ODVJ01026000
[ODVJ] human metagenome; G_DNA_Tongue dorsum
204
279
+
Glu
CTC
[ENA]
¢þ
>WENV181010368
ODWH01002302
[ODWH] human metagenome; G_DNA_Buccal mucosa
387
462
+
Glu
CTC
[ENA]
¢þ
>WENV181040176
ODXQ01179151
[ODXQ] human metagenome; G_DNA_Tongue dorsum
92
167
+
Glu
CTC
[ENA]
¢þ
>WENV181046320
ODXW01019755
[ODXW] human metagenome; G_DNA_Tongue dorsum
261
186
-
Glu
CTC
[ENA]
¢þ
>WENV181052281
ODYE01089968
[ODYE] human metagenome; G_DNA_Tongue dorsum
77
2
-
Glu
CTC
[ENA]
¢þ
>WENV181052853
ODYG01050813
[ODYG] human metagenome; G_DNA_Tongue dorsum
317
242
-
Glu
CTC
[ENA]
¢þ
>WENV181058959
ODYL01061818
[ODYL] human metagenome; G_DNA_Tongue dorsum
149
224
+
Glu
CTC
[ENA]
¢þ
>WENV181067948
ODZI01078056
[ODZI] human metagenome; G_DNA_Supragingival plaque
237
162
-
Glu
CTC
[ENA]
¢þ
>WENV181068733
ODZZ01001387
[ODZZ] human metagenome; G_DNA_Tongue dorsum
1895
1820
-
Glu
CTC
[ENA]
¢þ
>WENV181075145
OEAO01075785
[OEAO] human metagenome; G_DNA_Tongue dorsum
263
188
-
Glu
CTC
[ENA]
¢þ
>WENV181084903
OEAX01000366
[OEAX] human metagenome; G_DNA_Tongue dorsum
26893
26818
-
Glu
CTC
[ENA]
¢þ
>WENV181091695
OEBC01071708
[OEBC] human metagenome; G_DNA_Supragingival plaque
247
172
-
Glu
CTC
[ENA]
¢þ
>WENV181108060
OEEI01072677
[OEEI] human metagenome; G_DNA_Supragingival plaque
282
357
+
Glu
CTC
[ENA]
¢þ
>WENV181113691
OEEL01069878
[OEEL] human metagenome; G_DNA_Tongue dorsum
263
188
-
Glu
CTC
[ENA]
¢þ
>WENV181119933
OEFJ01000630
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
10524
10599
+
Glu
CTC
[ENA]
¢þ
>WENV181125307
OEFT01048252
[OEFT] human metagenome; G_DNA_Tongue dorsum
149
224
+
Glu
CTC
[ENA]
¢þ
>WENV181135594
OEGG01047351
[OEGG] human metagenome; G_DNA_Tongue dorsum
260
185
-
Glu
CTC
[ENA]
¢þ
>WENV181140276
OEGN01094706
[OEGN] human metagenome; G_DNA_Tongue dorsum
263
188
-
Glu
CTC
[ENA]
¢þ
>WENV181175819
OEJQ01044482
[OEJQ] human metagenome; G_DNA_Tongue dorsum
182
257
+
Glu
CTC
[ENA]
¢þ
>WENV181502283
OGGI01013469
[OGGI] metagenome; Human gut stool
246
321
+
Glu
CTC
[ENA]
¢þ
>C08003084
CP000792
Campylobacterota
Campylobacter concisus 13826 [CP000792]
197483
197558
+
Glu
CTC
[Ensembl]
¡û
>C08003111
CP000792
Campylobacterota
Campylobacter concisus 13826 [CP000792]
1138903
1138831
-
Glu
CTC
[Ensembl]
¡û
>WENV182961387
OKWK01003680
[OKWK] human gut metagenome; stool
270
345
+
Glu
CTC
[ENA]
¢þ
>W1911615235
PPCJ01000038
Campylobacterota
Campylobacter sp. AAUH-44UCsig-a [PPCJ]
20930
21005
+
Glu
CTC
[ENA]
¡û
>W1810148144
PIRH01000001
Campylobacterota
Campylobacter concisus P6CDO1 [PIRH]
54855
54780
-
Glu
CTC
[ENA]
¡û
>W1810148161
PIRH01000002
Campylobacterota
Campylobacter concisus P6CDO1 [PIRH]
1976
1901
-
Glu
CTC
[ENA]
¡û
>W1810148203
PIRI01000010
Campylobacterota
Campylobacter concisus P1CDO3 [PIRI]
61644
61719
+
Glu
CTC
[ENA]
¡û
>W1810148246
PIRJ01000012
Campylobacterota
Campylobacter concisus P1CDO2 [PIRJ]
15766
15841
+
Glu
CTC
[ENA]
¡û
>W1810148944
PISB01000001
Campylobacterota
Campylobacter concisus H7O-S1 [PISB]
325238
325313
+
Glu
CTC
[ENA]
¡û
>W1810148960
PISB01000003
Campylobacterota
Campylobacter concisus H7O-S1 [PISB]
321537
321612
+
Glu
CTC
[ENA]
¡û
>W1810228547
POYK01000459
Campylobacterota
Campylobacter concisus AAUH-1Dce-a [POYK]
37292
37367
+
Glu
CTC
[ENA]
¡û
>W1810228683
POYO01000005
Campylobacterota
Campylobacter concisus AAUH-49UCpp-a [POYO]
1879
1804
-
Glu
CTC
[ENA]
¡û
>W1810228806
POYR01000092
Campylobacterota
Campylobacter concisus AAUH-20HCsig-a [POYR]
443
518
+
Glu
CTC
[ENA]
¡û
>W1810228886
POYT01000162
Campylobacterota
Campylobacter concisus AAUH-44UCsig6 [POYT]
16731
16806
+
Glu
CTC
[ENA]
¡û
>W1810228967
POYV01000071
Campylobacterota
Campylobacter concisus AAUH-19HCf [POYV]
1959
1884
-
Glu
CTC
[ENA]
¡û
>W1810229062
POYY01000077
Campylobacterota
Campylobacter concisus AAUH-9HCce [POYY]
232
307
+
Glu
CTC
[ENA]
¡û
>W1810229277
POZE01000034
Campylobacterota
Campylobacter concisus AAUH-48UCdp-a [POZE]
525
450
-
Glu
CTC
[ENA]
¡û
>W1810229405
POZH01000214
Campylobacterota
Campylobacter concisus AAUH-11HCo-a [POZH]
2212
2287
+
Glu
CTC
[ENA]
¡û
>W1810229484
POZK01000001
Campylobacterota
Campylobacter concisus AAUH-2012179281 [POZK]
118513
118588
+
Glu
CTC
[ENA]
¡û
>W1810229681
POZP01000014
Campylobacterota
Campylobacter concisus AAUH-51UCf [POZP]
16989
16914
-
Glu
CTC
[ENA]
¡û
>W1810229699
POZP01000032
Campylobacterota
Campylobacter concisus AAUH-51UCf [POZP]
886
961
+
Glu
CTC
[ENA]
¡û
>W1810229897
POZU01000072
Campylobacterota
Campylobacter concisus AAUH-48UCo-a [POZU]
14273
14348
+
Glu
CTC
[ENA]
¡û
>W1810229960
POZW01000060
Campylobacterota
Campylobacter concisus AAUH-55UCtra-a [POZW]
21168
21093
-
Glu
CTC
[ENA]
¡û
>W1810230129
PPAB01000047
Campylobacterota
Campylobacter concisus AAUH-8HCo [PPAB]
109017
108942
-
Glu
CTC
[ENA]
¡û
>W1810230219
PPAE01000005
Campylobacterota
Campylobacter concisus AAUH-12CDti4-a [PPAE]
256
181
-
Glu
CTC
[ENA]
¡û
>W1810230241
PPAE01000029
Campylobacterota
Campylobacter concisus AAUH-12CDti4-a [PPAE]
63671
63746
+
Glu
CTC
[ENA]
¡û
>W1810230296
PPAF01000036
Campylobacterota
Campylobacter concisus AAUH-20UCo [PPAF]
145
220
+
Glu
CTC
[ENA]
¡û
>W1810230375
PPAH01000019
Campylobacterota
Campylobacter concisus AAUH-12CDti5-a [PPAH]
35177
35252
+
Glu
CTC
[ENA]
¡û
>W1810230382
PPAH01000025
Campylobacterota
Campylobacter concisus AAUH-12CDti5-a [PPAH]
49070
49145
+
Glu
CTC
[ENA]
¡û
>W1810230399
PPAI01000008
Campylobacterota
Campylobacter concisus AAUH-12CDtra2-a [PPAI]
63673
63748
+
Glu
CTC
[ENA]
¡û
>W1810230431
PPAI01000034
Campylobacterota
Campylobacter concisus AAUH-12CDtra2-a [PPAI]
256
181
-
Glu
CTC
[ENA]
¡û
>W1810230517
PPAL01000002
Campylobacterota
Campylobacter concisus AAUH-12CDdes4 [PPAL]
17514
17589
+
Glu
CTC
[ENA]
¡û
>W1810230553
PPAL01000036
Campylobacterota
Campylobacter concisus AAUH-12CDdes4 [PPAL]
256
181
-
Glu
CTC
[ENA]
¡û
>W1810230567
PPAM01000009
Campylobacterota
Campylobacter concisus AAUH-12CDce [PPAM]
420201
420126
-
Glu
CTC
[ENA]
¡û
>W1810230598
PPAM01000021
Campylobacterota
Campylobacter concisus AAUH-12CDce [PPAM]
146
221
+
Glu
CTC
[ENA]
¡û
>W1810230620
PPAN01000029
Campylobacterota
Campylobacter concisus AAUH-16UCf3 [PPAN]
95
170
+
Glu
CTC
[ENA]
¡û
>W1810230668
PPAO01000058
Campylobacterota
Campylobacter concisus AAUH-8UCpp-a [PPAO]
649
574
-
Glu
CTC
[ENA]
¡û
>W1810230819
PPAS01000013
Campylobacterota
Campylobacter concisus AAUH-37UCo-a [PPAS]
75257
75182
-
Glu
CTC
[ENA]
¡û
>W1810230831
PPAS01000030
Campylobacterota
Campylobacter concisus AAUH-37UCo-a [PPAS]
29318
29393
+
Glu
CTC
[ENA]
¡û
>W1810230987
PPAW01000015
Campylobacterota
Campylobacter concisus AAUH-12CDrec-a [PPAW]
1899
1824
-
Glu
CTC
[ENA]
¡û
>W1810231404
PPBG01000042
Campylobacterota
Campylobacter concisus AAUH-39CDf [PPBG]
10854
10779
-
Glu
CTC
[ENA]
¡û
>W1810231410
PPBG01000046
Campylobacterota
Campylobacter concisus AAUH-39CDf [PPBG]
48527
48452
-
Glu
CTC
[ENA]
¡û
>W1810231596
PPBL01000068
Campylobacterota
Campylobacter concisus AAUH-7UCil [PPBL]
604
529
-
Glu
CTC
[ENA]
¡û
>W1810231680
PPBN01000059
Campylobacterota
Campylobacter concisus AAUH-4UCti-a [PPBN]
10903
10828
-
Glu
CTC
[ENA]
¡û
>W1810231890
PPBT01000058
Campylobacterota
Campylobacter concisus AAUH-8UCpp [PPBT]
649
574
-
Glu
CTC
[ENA]
¡û
>W1810232221
PPCB01000123
Campylobacterota
Campylobacter concisus AAUH-5CDo [PPCB]
45454
45379
-
Glu
CTC
[ENA]
¡û
>W1810232228
PPCB01000139
Campylobacterota
Campylobacter concisus AAUH-5CDo [PPCB]
257
182
-
Glu
CTC
[ENA]
¡û
>W1810232429
PPCG01000056
Campylobacterota
Campylobacter concisus AAUH-20UCf [PPCG]
1812
1737
-
Glu
CTC
[ENA]
¡û
>W1810232493
PPCI01000021
Campylobacterota
Campylobacter concisus AAUH-22UCpp-a [PPCI]
42792
42717
-
Glu
CTC
[ENA]
¡û
>W121000769
ACWJ01000007
Campylobacterota
Campylobacter sp. 10_1_50 [ACWJ]
26056
25981
-
Glu
CTC
[ENA]
¡û
>W121000796
ACWJ01000014
Campylobacterota
Campylobacter sp. 10_1_50 [ACWJ]
161691
161616
-
Glu
CTC
[ENA]
¡û
>W121111429
ALJJ01000018
Campylobacterota
Campylobacter sp. FOBRC14 [ALJJ]
369089
369014
-
Glu
CTC
[ENA]
¡û
>W1710660646
JXUP01000001
Campylobacterota
Campylobacter concisus [JXUP]
251449
251374
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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