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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238671 (36 seq.)
>W1711167514
LVWJ02000008
Bacteroidota
Lewinella sp. 4G2 [LVWJ]
523
449
-
Ile
GAT
[ENA]
¡û
>WENV180544692
OCIR01001605
[OCIR] human gut metagenome; human gut
377
452
+
Ile
GAT
[ENA]
¡û
>WENV181239969
OFFD01038446
[OFFD] mouse gut metagenome; faeces
532
458
-
Ile
GAT
[ENA]
¡û
>WENV181274197
OFGI01000011
[OFGI] mouse gut metagenome; faeces
2252
2178
-
Ile
GAT
[ENA]
¡û
>WENV183435787
OMCB01001793
[OMCB] human gut metagenome; feces
221
295
+
Ile
GAT
[ENA]
¡û
>WENV183455210
OMDI01001135
[OMDI] human gut metagenome; feces
2164
2090
-
Ile
GAT
[ENA]
¡û
>WENV183461963
OMDV01008308
[OMDV] human gut metagenome; feces
2241
2167
-
Ile
GAT
[ENA]
¡û
>WENV183615058
OOEA01043918
[OOEA] marine metagenome; sea ice
145
219
+
Ile
GAT
[ENA]
¡û
>WENV183628294
OOGN01005656
[OOGN] marine metagenome; sea ice
875
801
-
Ile
GAT
[ENA]
¡û
>WENV183723077
PDYJ01000245
[PDYJ] gut metagenome; fecal pellets
3647
3573
-
Ile
GAT
[ENA]
¡û
>WENV183723192
PDYJ01000766
[PDYJ] gut metagenome; fecal pellets
725379
725453
+
Ile
GAT
[ENA]
¡û
>WENV183723193
PDYJ01000766
[PDYJ] gut metagenome; fecal pellets
918789
918863
+
Ile
GAT
[ENA]
¡û
>WENV183723258
PDYJ01000831
[PDYJ] gut metagenome; fecal pellets
10069
9995
-
Ile
GAT
[ENA]
¡û
>WENV183723303
PDYJ01001288
[PDYJ] gut metagenome; fecal pellets
4351
4277
-
Ile
GAT
[ENA]
¡û
>WENV183723528
PDYJ01002302
[PDYJ] gut metagenome; fecal pellets
625563
625487
-
Ile
GAT
[ENA]
¡û
>WENV183723532
PDYJ01002302
[PDYJ] gut metagenome; fecal pellets
361365
361289
-
Ile
GAT
[ENA]
¡û
>WENV183723786
PDYJ01003165
[PDYJ] gut metagenome; fecal pellets
2343
2417
+
Ile
GAT
[ENA]
¡û
>WENV183774884
PPYF01063226
[PPYF] human gut metagenome; stool from patient with Crohn's disease
288
362
+
Ile
GAT
[ENA]
¡û
>WENV170110809
CECF01045424
[CECF] gut metagenome; human stools
174
250
+
Ile
GAT
[ENA]
¡û
>WENV170562100
CZCB01000908
[CZCB] anaerobic digester metagenome; anaerobic digester
1612
1536
-
Ile
GAT
[ENA]
¡û
>WENV170967007
MTKW01000086
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1752
1826
+
Ile
GAT
[ENA]
¡û
>WENV170967728
MTKW01003176
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
772
698
-
Ile
GAT
[ENA]
¡û
>C191175228
CP040121
Bacteroidota
Duncaniella sp. B8 [CP040121]
1928406
1928480
+
Ile
GAT
-
¡û
>C191175255
CP040121
Bacteroidota
Duncaniella sp. B8 [CP040121]
1413812
1413738
-
Ile
GAT
-
¡û
>W2011429998
RIBJ01000069
Bacteroidota
Isolate-104 (HZI) [RIBJ]
1591
1665
+
Ile
GAT
[ENA]
¡û
>W2011672266
SPPC01000033
Bacteroidota
Barnesiella sp. WM24 [SPPC]
245
319
+
Ile
GAT
[ENA]
¡û
>W2011692638
SSTK01000021
Bacteroidota
Muribaculaceae bacterium NM77_A26 [SSTK]
3182
3108
-
Ile
GAT
[ENA]
¡û
>W2011761866
UATO01000009
Bacteroidota
Porphyromonas cangingivalis NCTC12857 [UATO]
321824
321898
+
Ile
GAT
[ENA]
¡û
>W2011761896
UATO01000009
Bacteroidota
Porphyromonas cangingivalis NCTC12857 [UATO]
1281617
1281543
-
Ile
GAT
[ENA]
¡û
>W2012131629
VSMC01000076
Bacteroidota
Muribaculaceae bacterium AM35 [VSMC]
345
271
-
Ile
GAT
[ENA]
¡û
>W2110121459
CAJSYL010000085
Bacteroidota
Duncaniella muris [CAJSYL]
1844
1770
-
Ile
GAT
[ENA]
¡û
>W2110124496
CAJTCF010000167
Bacteroidota
Bacteroidales bacterium [CAJTCF]
297
221
-
Ile
GAT
[ENA]
¡û
>W1511328391
JQJF01000002
Bacteroidota
Porphyromonas cangingivalis COT-109 OH1379 [JQJF]
265240
265316
+
Ile
GAT
[ENA]
¡û
>W1610977671
LVWJ02000008
Bacteroidota
Lewinella sp. 4G2 [LVWJ]
523
449
-
Ile
GAT
[ENA]
¡û
>WENV079505
AATE01001443
Gut microbiome of Mouse lean and obese (C57BL/6J; sample ob2, leptin genotype ob/ob)
539
615
+
Ile
GAT
[ENA]
>W1710582600
FQUC01000035
Bacteroidota
Dysgonomonas macrotermitis [FQUC]
3460
3384
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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