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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238690 (106 seq.)
>W1710885367
LMXE01000011
Bacillota
Leuconostoc mesenteroides [LMXE]
2248
2174
-
Ala
TGC
[ENA]
¡û
>W1711133737
LUWY01000073
Bacillota
Lactiplantibacillus plantarum [LUWY]
173
99
-
Ala
TGC
[ENA]
¡û
>W1711134038
LUXE01000012
Bacillota
Lactiplantibacillus plantarum [LUXE]
173
99
-
Ala
TGC
[ENA]
¡û
>W131191680
ASJE01000203
Bacillota
Lactiplantibacillus plantarum IPLA88 [ASJE]
150
76
-
Ala
TGC
[ENA]
¡û
>W1711617728
MPAR01000055
Bacillota
Leuconostoc pseudomesenteroides [MPAR]
1915
1989
+
Ala
TGC
[ENA]
¡û
>W1711618308
MPBD01000052
Bacillota
Leuconostoc pseudomesenteroides [MPBD]
3392
3318
-
Ala
TGC
[ENA]
¡û
>W1711622533
MPED01000070
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPED]
3412
3338
-
Ala
TGC
[ENA]
¡û
>W1711627528
MPLN01000038
Bacillota
Leuconostoc lactis [MPLN]
3420
3346
-
Ala
TGC
[ENA]
¡û
>W1711627778
MPLS01000054
Bacillota
Leuconostoc pseudomesenteroides [MPLS]
1697
1771
+
Ala
TGC
[ENA]
¡û
>W1711658746
MQNL01000032
Bacillota
Lactiplantibacillus plantarum [MQNL]
18507
18581
+
Ala
TGC
[ENA]
¡û
>W1711686087
MSAU01000062
Bacillota
Lentilactobacillus parabuchneri [MSAU]
246
320
+
Ala
TGC
[ENA]
¡û
>W1711686260
MSAX01000036
Bacillota
Lentilactobacillus parabuchneri [MSAX]
246
320
+
Ala
TGC
[ENA]
¡û
>W1711686376
MSAZ01000049
Bacillota
Lentilactobacillus parabuchneri [MSAZ]
246
320
+
Ala
TGC
[ENA]
¡û
>W1711686549
MSBC01000035
Bacillota
Lentilactobacillus parabuchneri [MSBC]
246
320
+
Ala
TGC
[ENA]
¡û
>W1711686607
MSBD01000109
Bacillota
Lentilactobacillus parabuchneri [MSBD]
246
320
+
Ala
TGC
[ENA]
¡û
>W1711686895
MSBI01000042
Bacillota
Lentilactobacillus parabuchneri [MSBI]
246
320
+
Ala
TGC
[ENA]
¡û
>W1711903205
MZMW01000002
Bacillota
Levilactobacillus brevis [MZMW]
113847
113921
+
Ala
TGC
[ENA]
¡û
>W1711999784
NDXG01000009
Bacillota
Leuconostoc citreum [NDXG]
3420
3346
-
Ala
TGC
[ENA]
¡û
>C171034159
CP014915
Bacillota
Secundilactobacillus paracollinoides TMW 1.1994 [CP014915]
969987
970061
+
Ala
TGC
-
¡û
>C171051203
CP016797
Bacillota
Levilactobacillus brevis TMW 1.2112 [CP016797]
868504
868578
+
Ala
TGC
-
¡û
>C171051221
CP016797
Bacillota
Levilactobacillus brevis TMW 1.2112 [CP016797]
1895566
1895492
-
Ala
TGC
-
¡û
>C171086155
CP018906
Bacillota
Lentilactobacillus curieae CCTCC M 2011381 [CP018906]
174066
173992
-
Ala
TGC
-
¡û
>C171086177
CP018906
Bacillota
Lentilactobacillus curieae CCTCC M 2011381 [CP018906]
64009
63935
-
Ala
TGC
-
¡û
>WENV180242144
OBDI01103552
[OBDI] metagenome; diffuse fluid
213
138
-
Ala
TGC
[ENA]
¢þ
>WENV180316963
OBKJ01003111
[OBKJ] metagenome; hydrothermal vent
388
463
+
Ala
TGC
[ENA]
¢þ
>WENV181206227
OFAT01000860
[OFAT] metagenome; hydrothermal vent
342
417
+
Ala
TGC
[ENA]
¢þ
>WENV181206677
OFAW01001694
[OFAW] metagenome; hydrothermal vent
285
360
+
Ala
TGC
[ENA]
¢þ
>WENV181207143
OFAY01001692
[OFAY] metagenome; hydrothermal vent
284
359
+
Ala
TGC
[ENA]
¢þ
>WENV181207522
OFAZ01001666
[OFAZ] metagenome; hydrothermal vent
342
417
+
Ala
TGC
[ENA]
¢þ
>WENV181207948
OFBA01004261
[OFBA] metagenome; hydrothermal vent
1011
936
-
Ala
TGC
[ENA]
¢þ
>WENV181208277
OFBB01002092
[OFBB] metagenome; hydrothermal vent
1855
1780
-
Ala
TGC
[ENA]
¢þ
>WENV181208695
OFBC01001665
[OFBC] metagenome; hydrothermal vent
284
359
+
Ala
TGC
[ENA]
¢þ
>WENV181212160
OFBM01017773
[OFBM] metagenome; hydrothermal vent
11
86
+
Ala
TGC
[ENA]
¢þ
>WENV181213023
OFBU01005029
[OFBU] metagenome; hydrothermal vent
1005
930
-
Ala
TGC
[ENA]
¢þ
>WENV181213482
OFBV01004454
[OFBV] metagenome; hydrothermal vent
387
462
+
Ala
TGC
[ENA]
¢þ
>WENV181213893
OFBW01001746
[OFBW] metagenome; hydrothermal vent
393
468
+
Ala
TGC
[ENA]
¢þ
>WENV181214607
OFBY01003063
[OFBY] metagenome; hydrothermal vent
993
918
-
Ala
TGC
[ENA]
¢þ
>WENV181215172
OFBZ01006578
[OFBZ] metagenome; hydrothermal vent
937
862
-
Ala
TGC
[ENA]
¢þ
>WENV181215648
OFCA01005993
[OFCA] metagenome; hydrothermal vent
393
468
+
Ala
TGC
[ENA]
¢þ
>WENV181216173
OFCB01007475
[OFCB] metagenome; hydrothermal vent
925
850
-
Ala
TGC
[ENA]
¢þ
>WENV181223861
OFDD01001692
[OFDD] metagenome; hydrothermal vent
284
359
+
Ala
TGC
[ENA]
¢þ
>WENV181224196
OFDE01000684
[OFDE] metagenome; hydrothermal vent
2106
2031
-
Ala
TGC
[ENA]
¢þ
>WENV181224457
OFDF01001525
[OFDF] metagenome; hydrothermal vent
1526
1451
-
Ala
TGC
[ENA]
¢þ
>WENV181224702
OFDG01001657
[OFDG] metagenome; hydrothermal vent
284
359
+
Ala
TGC
[ENA]
¢þ
>WENV181225451
OFDI01001856
[OFDI] metagenome; hydrothermal vent
284
359
+
Ala
TGC
[ENA]
¢þ
>W141153698
AXDQ01000020
Bacillota
Lactiplantibacillus plantarum LP91 [AXDQ]
32018
32092
+
Ala
TGC
[ENA]
¡û
>W141153716
AXDQ01000051
Bacillota
Lactiplantibacillus plantarum LP91 [AXDQ]
30256
30330
+
Ala
TGC
[ENA]
¡û
>W141206383
AZMB01000294
Bacillota
Leuconostoc sp. DORA_2 [AZMB]
754
680
-
Ala
TGC
[ENA]
¡û
>WENV183511971
OMJG01026147
[OMJG] food metagenome; Cotija cheese
160
234
+
Ala
TGC
[ENA]
¢þ
>W141402116
JDVA01000019
Bacillota
Leuconostoc pseudomesenteroides PS12 [JDVA]
3392
3318
-
Ala
TGC
[ENA]
¡û
>C181018919
CP016270
Bacillota
Lactiplantibacillus plantarum subsp. plantarum CGMCC 1.557 [CP016270]
296269
296343
+
Ala
TGC
-
¡û
>C181018938
CP016270
Bacillota
Lactiplantibacillus plantarum subsp. plantarum CGMCC 1.557 [CP016270]
2834748
2834822
+
Ala
TGC
-
¡û
>C181023117
CP017066
Bacillota
Lactiplantibacillus plantarum LP3 [CP017066]
500950
501024
+
Ala
TGC
-
¡û
>C181023132
CP017066
Bacillota
Lactiplantibacillus plantarum LP3 [CP017066]
1153214
1153288
+
Ala
TGC
-
¡û
>C191073959
CP031169
Bacillota
Levilactobacillus brevis UCCLBBS124 [CP031169]
669808
669882
+
Ala
TGC
-
¡û
>C191073999
CP031169
Bacillota
Levilactobacillus brevis UCCLBBS124 [CP031169]
1698875
1698801
-
Ala
TGC
-
¡û
>C191074201
CP031198
Bacillota
Levilactobacillus brevis UCCLBBS449 [CP031198]
652643
652717
+
Ala
TGC
-
¡û
>C191074243
CP031198
Bacillota
Levilactobacillus brevis UCCLBBS449 [CP031198]
1719064
1718990
-
Ala
TGC
-
¡û
>C191114410
CP033885
Bacillota
Levilactobacillus brevis LMT1-73 [CP033885]
1124084
1124158
+
Ala
TGC
-
¡û
>C191114449
CP033885
Bacillota
Levilactobacillus brevis LMT1-73 [CP033885]
2120762
2120688
-
Ala
TGC
-
¡û
>W1910230939
FPCL01000121
Bacillota
Levilactobacillus brevis [FPCL]
1787
1861
+
Ala
TGC
[ENA]
¡û
>W1910231215
FPCR01000016
Bacillota
Levilactobacillus brevis [FPCR]
238
312
+
Ala
TGC
[ENA]
¡û
>W1910799298
MSVH01000159
Bacillota
Lactiplantibacillus plantarum B3-1 [MSVH]
124
198
+
Ala
TGC
[ENA]
¡û
>W1910799345
MSVI01000139
Bacillota
Lactiplantibacillus plantarum B3-2 [MSVI]
114
188
+
Ala
TGC
[ENA]
¡û
>W1910800326
MSWB01000140
Bacillota
Lactiplantibacillus plantarum R2.2.1 [MSWB]
96
22
-
Ala
TGC
[ENA]
¡û
>W1910802058
MSXJ01000123
Bacillota
Lactiplantibacillus plantarum R14.2.2 [MSXJ]
114
188
+
Ala
TGC
[ENA]
¡û
>W1911541736
OOIO01000009
Bacillota
Leuconostoc carnosum MFPA29A1405 [OOIO]
3352
3278
-
Ala
TGC
[ENA]
¡û
>W1911631728
PUFI01000002
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
87454
87528
+
Ala
TGC
[ENA]
¡û
>W1911631792
PUFI01000010
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
3576
3502
-
Ala
TGC
[ENA]
¡û
>W1911631796
PUFI01000013
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
94518
94592
+
Ala
TGC
[ENA]
¡û
>W1911631797
PUFI01000014
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
2091
2165
+
Ala
TGC
[ENA]
¡û
>W1911631810
PUFI01000016
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
3389
3315
-
Ala
TGC
[ENA]
¡û
>W1911632097
PUFO01000015
Bacillota
Secundilactobacillus malefermentans ATCC 49373 [PUFO]
1788
1862
+
Ala
TGC
[ENA]
¡û
>W1911632156
PUFP01000012
Bacillota
Lentilactobacillus buchneri ATCC 4005 [PUFP]
142
68
-
Ala
TGC
[ENA]
¡û
>W1810473126
QAHG01000036
Bacillota
Lactiplantibacillus plantarum DS14_9 [QAHG]
223
149
-
Ala
TGC
[ENA]
¡û
>W1810705446
QMJH01000047
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_608 [QMJH]
3412
3338
-
Ala
TGC
[ENA]
¡û
>W1810705780
QMJO01000051
Bacillota
Levilactobacillus brevis KMB_615 [QMJO]
12380
12454
+
Ala
TGC
[ENA]
¡û
>SRA1031891
SRR035087.506425
454 Sequencing (SRP001808)
160
235
+
Ala
TGC
[SRA]
>C11112206
CP002652
Bacillota
Lentilactobacillus buchneri NRRL B-30929 [CP002652]
708023
708097
+
Ala
TGC
[Ensembl]
¡û
>C11112226
CP002652
Bacillota
Lentilactobacillus buchneri NRRL B-30929 [CP002652]
831228
831302
+
Ala
TGC
[Ensembl]
¡û
>W1511468947
JVUU01000012
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
228446
228372
-
Ala
TGC
[ENA]
¡û
>W1511468968
JVUU01000031
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
3420
3346
-
Ala
TGC
[ENA]
¡û
>W1511468969
JVUU01000032
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
2004
2078
+
Ala
TGC
[ENA]
¡û
>W11140962
AEMJ01000011
Bacillota
Leuconostoc inhae KCTC 3774 [AEMJ]
1986
2060
+
Ala
TGC
[ENA]
¡û
>W1511585784
LAYV01000039
Bacillota
Leuconostoc mesenteroides subsp. cremoris LbT16 [LAYV]
3412
3338
-
Ala
TGC
[ENA]
¡û
>W1511589384
LBDF01000002
Bacillota
Lactiplantibacillus plantarum 8 RA-3 [LBDF]
587823
587897
+
Ala
TGC
[ENA]
¡û
>W1511589405
LBDF01000007
Bacillota
Lactiplantibacillus plantarum 8 RA-3 [LBDF]
289
215
-
Ala
TGC
[ENA]
¡û
>W1511589407
LBDF01000008
Bacillota
Lactiplantibacillus plantarum 8 RA-3 [LBDF]
122093
122167
+
Ala
TGC
[ENA]
¡û
>W1511589416
LBDF01000013
Bacillota
Lactiplantibacillus plantarum 8 RA-3 [LBDF]
69582
69656
+
Ala
TGC
[ENA]
¡û
>W1511641886
LDUY01000062
Bacillota
Fructobacillus sp. EFB-N1 [LDUY]
2075
2149
+
Ala
TGC
[ENA]
¡û
>W1511699456
LGIM01000082
Bacillota
Lactiplantibacillus plantarum SNU.Lp177 [LGIM]
427
353
-
Ala
TGC
[ENA]
¡û
>C161093818
CP016071
Bacillota
Lactiplantibacillus plantarum NCU116 [CP016071]
686405
686331
-
Ala
TGC
[Ensembl]
¡û
>C161093833
CP016071
Bacillota
Lactiplantibacillus plantarum NCU116 [CP016071]
85459
85385
-
Ala
TGC
[Ensembl]
¡û
>W1610031305
AYYR01000099
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [AYYR]
154
80
-
Ala
TGC
[ENA]
¡û
>W1610034949
AZED01000012
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
142
68
-
Ala
TGC
[ENA]
¡û
>C131000159
AP012167
Bacillota
Levilactobacillus brevis KB290 [AP012167]
575354
575428
+
Ala
TGC
[Ensembl]
¡û
>C131000200
AP012167
Bacillota
Levilactobacillus brevis KB290 [AP012167]
1494384
1494310
-
Ala
TGC
[Ensembl]
¡û
>W1710028257
AYYR01000099
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [AYYR]
154
80
-
Ala
TGC
[ENA]
¡û
>W1710031391
AZDP01000096
Bacillota
Levilactobacillus koreensis JCM 16448 [AZDP]
181
255
+
Ala
TGC
[ENA]
¡û
>W1710032076
AZED01000012
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
142
68
-
Ala
TGC
[ENA]
¡û
>W1710034360
AZFY01000141
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
148
74
-
Ala
TGC
[ENA]
¡û
>W1710058700
BCMI01000070
Bacillota
Secundilactobacillus pentosiphilus IWT25 [BCMI]
202
128
-
Ala
TGC
[ENA]
¡û
>W1710715840
LEBD01000027
Bacillota
Lactiplantibacillus plantarum [LEBD]
96
22
-
Ala
TGC
[ENA]
¡û
>W1710716352
LEBM01000064
Bacillota
Lactiplantibacillus plantarum [LEBM]
146
220
+
Ala
TGC
[ENA]
¡û
>W1710716460
LEBO01000063
Bacillota
Lactiplantibacillus plantarum [LEBO]
145
219
+
Ala
TGC
[ENA]
¡û
>W1710735879
LGIX01000002
Bacillota
Levilactobacillus brevis [LGIX]
93956
93882
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK