This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238756 (30 seq.)
>W1711097991
LTJE01000032
Bacteroidota
Weeksella sp. HMSC059D05 [LTJE]
117
42
-
Met
CAT
[ENA]
¡û
>W131181276
ARNT01000029
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
232819
232744
-
Met
CAT
[ENA]
¡û
>W131181275
ARNT01000029
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
232898
232823
-
Met
CAT
[ENA]
¡û
>W1711487706
MKGI01000043
Bacteroidota
Cloacibacterium normanense [MKGI]
23727
23652
-
Met
CAT
[ENA]
¡û
>WENV180284076
OBID01014682
[OBID] metagenome; sludge
503
430
-
fMet
CAT
[ENA]
¢þ
>WENV181168443
OEIU01366797
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
164
91
-
fMet
CAT
[ENA]
¢þ
>W141266264
CCMH01000046
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
4083
4158
+
Met
CAT
[ENA]
¡û
>W141266265
CCMH01000046
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
4163
4238
+
Met
CAT
[ENA]
¡û
>WENV183727660
PJTP01000066
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
2063
2136
+
fMet
CAT
[ENA]
¢þ
>WENV183727661
PJTP01000066
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
2143
2216
+
fMet
CAT
[ENA]
¢þ
>WENV170010889
APMI01033496
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2996
3069
+
Met
CAT
[ENA]
¢þ
>WENV170658163
JTFP01062588
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
665
590
-
Met
CAT
[ENA]
¢þ
>C191120405
CP034157
Bacteroidota
Cloacibacterium normanense NRS-1 [CP034157]
855099
855026
-
Met
CAT
-
¡û
>C191210737
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
2120889
2120962
+
Met
CAT
-
¡û
>C191210738
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
2120969
2121042
+
Met
CAT
-
¡û
>W1810304708
PTPZ01000004
Bacteroidota
Cloacibacterium normanense IMET F [PTPZ]
202266
202339
+
Met
CAT
[ENA]
¡û
>W1511391186
JSYQ01000049
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
1009
934
-
Met
CAT
[ENA]
¡û
>W1511391187
JSYQ01000049
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
930
855
-
Met
CAT
[ENA]
¡û
>C11123819
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
987507
987432
-
Met
CAT
[Ensembl]
¡û
>C11123820
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
987427
987352
-
Met
CAT
[Ensembl]
¡û
>W1610503143
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
349261
349336
+
Met
CAT
[ENA]
¡û
>W1610503144
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
349341
349416
+
Met
CAT
[ENA]
¡û
>W1710496377
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
349261
349336
+
Met
CAT
[ENA]
¡û
>W1710496378
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
349341
349416
+
Met
CAT
[ENA]
¡û
>W1710524986
FNJE01000001
Bacteroidota
Cloacibacterium normanense [FNJE]
23986
23911
-
Met
CAT
[ENA]
¡û
>W1710570196
FOUZ01000003
Bacteroidota
Algoriella xinjiangensis [FOUZ]
64258
64333
+
Met
CAT
[ENA]
¡û
>W1710570197
FOUZ01000003
Bacteroidota
Algoriella xinjiangensis [FOUZ]
66748
66823
+
Met
CAT
[ENA]
¡û
>W1710590796
FRBH01000007
Bacteroidota
Chishuiella changwenlii [FRBH]
298892
298967
+
Met
CAT
[ENA]
¡û
>W1710590797
FRBH01000007
Bacteroidota
Chishuiella changwenlii [FRBH]
298971
299046
+
Met
CAT
[ENA]
¡û
>W1710606309
FWXS01000001
Bacteroidota
Moheibacter sediminis [FWXS]
598225
598150
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK