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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238804 (85 seq.)
>W1710891812
LNDB01000007
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
96765
96690
-
Glu
TTC
[ENA]
¡û
>W1710891825
LNDB01000020
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
1609
1534
-
Glu
TTC
[ENA]
¡û
>W1710923786
LOCK01000001
Bacillota
Desulfitobacterium hafniense [LOCK]
78794
78869
+
Glu
TTC
[ENA]
¡û
>W1710923818
LOCK01000048
Bacillota
Desulfitobacterium hafniense [LOCK]
1330
1255
-
Glu
TTC
[ENA]
¡û
>W131162709
AQZD01000007
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
198859
198934
+
Glu
TTC
[ENA]
¡û
>W131162724
AQZD01000012
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
105
30
-
Glu
TTC
[ENA]
¡û
>W131162725
AQZD01000013
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
3781
3706
-
Glu
TTC
[ENA]
¡û
>W131162822
AQZF01000014
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
444453
444528
+
Glu
TTC
[ENA]
¡û
>W131162843
AQZF01000025
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
122544
122469
-
Glu
TTC
[ENA]
¡û
>W131164666
ARAZ01000007
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
1851
1926
+
Glu
TTC
[ENA]
¡û
>W131164667
ARAZ01000016
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
15815
15740
-
Glu
TTC
[ENA]
¡û
>W131164702
ARAZ01000038
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
87574
87649
+
Glu
TTC
[ENA]
¡û
>C171098308
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
2188409
2188484
+
Glu
TTC
-
¡û
>W131242985
CAOS01000010
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
41607
41682
+
Glu
TTC
[ENA]
¡û
>C007787
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
1722797
1722872
+
Glu
TTC
[Ensembl]
¡û
>C007808
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
5693598
5693523
-
Glu
TTC
[Ensembl]
¡û
>w002194
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
69274
69202
-
Glu
TTC
[ENA]
¡û
>w002179
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
72425
72353
-
Glu
TTC
[ENA]
¡û
>w002154
AAAW04000003
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
612494
612571
+
Glu
TTC
[ENA]
¡û
>WENV170003536
AGTN01369410
[AGTN] bioreactor metagenome; poplar biomass
168
93
-
Glu
TTC
[ENA]
¢þ
>WENV170658776
JUEG02000561
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
18134
18059
-
Glu
TTC
[ENA]
¢þ
>WENV170970014
MTKW01049112
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
208
283
+
Glu
TTC
[ENA]
¢þ
>WENV170970018
MTKW01049113
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2017
2092
+
Glu
TTC
[ENA]
¢þ
>W09135925
BAAC01000171
Bacillota
Pelotomaculum thermopropionicum SI [BAAC]
30601
30676
+
Glu
TTC
[ENA]
¡û
>W141779325
JONT01000001
Bacillota
Desulfofalx alkaliphila DSM 12257 [JONT]
204855
204930
+
Glu
TTC
[ENA]
¡û
>W141779340
JONT01000003
Bacillota
Desulfofalx alkaliphila DSM 12257 [JONT]
147238
147163
-
Glu
TTC
[ENA]
¡û
>W1910004740
AWQQ01000027
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
32287
32362
+
Glu
TTC
[ENA]
¡û
>W1910004790
AWQQ01000091
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
2188
2113
-
Glu
TTC
[ENA]
¡û
>W1910004945
AWVY01000010
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
42023
42098
+
Glu
TTC
[ENA]
¡û
>W1910004955
AWVY01000031
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
6606
6531
-
Glu
TTC
[ENA]
¡û
>C09103983
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2797476
2797551
+
Glu
TTC
[Ensembl]
¡û
>C09103998
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2800627
2800702
+
Glu
TTC
[Ensembl]
¡û
>C09104019
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
5245291
5245216
-
Glu
TTC
[Ensembl]
¡û
>W1911661960
QFFZ01000013
Bacillota
Pelotomaculum propionicicum MGP [QFFZ]
42401
42476
+
Glu
TTC
[ENA]
¡û
>W1911662070
QFGB01000023
Bacillota
Pelotomaculum sp. FP [QFGB]
29352
29427
+
Glu
TTC
[ENA]
¡û
>W1810004225
BFAV01000005
Bacillota
Desulfocucumis palustris NAW-5 [BFAV]
7038
7113
+
Glu
TTC
[ENA]
¡û
>W1810004234
BFAV01000030
Bacillota
Desulfocucumis palustris NAW-5 [BFAV]
4198
4273
+
Glu
TTC
[ENA]
¡û
>W1810004248
BFAV01000119
Bacillota
Desulfocucumis palustris NAW-5 [BFAV]
32045
31970
-
Glu
TTC
[ENA]
¡û
>W1810440674
PZHC01000014
Bacillota
Mammaliicoccus sciuri SNUC 1372 [PZHC]
119
43
-
Glu
TTC
[ENA]
¡û
>ENV09001728
ACQI01003833
Hydrothermal vent metagenome LCHCB.C1
452
377
-
Glu
TTC
[ENA]
¡û
>ENV09001835
ACQI01013294
Hydrothermal vent metagenome LCHCB.C1
108
183
+
Glu
TTC
[ENA]
¡û
>C11106927
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
1656076
1656151
+
Glu
TTC
[Ensembl]
¡û
>C11106935
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
2860919
2860844
-
Glu
TTC
[Ensembl]
¡û
>C11106949
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
1966499
1966424
-
Glu
TTC
[Ensembl]
¡û
>C11107333
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
1204920
1204995
+
Glu
TTC
[Ensembl]
¡û
>C11107343
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
3942922
3942847
-
Glu
TTC
[Ensembl]
¡û
>C11107361
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
1678512
1678437
-
Glu
TTC
[Ensembl]
¡û
>C11120633
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
3367439
3367364
-
Glu
TTC
[Ensembl]
¡û
>C11120642
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2270954
2270879
-
Glu
TTC
[Ensembl]
¡û
>W1511429898
JUEB01000011
Bacillota
Peptococcaceae bacterium BICA1-7 [JUEB]
117303
117228
-
Glu
TTC
[ENA]
¡û
>W1511429903
JUEB01000014
Bacillota
Peptococcaceae bacterium BICA1-7 [JUEB]
39466
39541
+
Glu
TTC
[ENA]
¡û
>W1511564180
LADN01000020
Bacillota
Peptococcaceae bacterium BRH_c4a [LADN]
44441
44516
+
Glu
TTC
[ENA]
¡û
>W1511564208
LADN01000077
Bacillota
Peptococcaceae bacterium BRH_c4a [LADN]
2957
2882
-
Glu
TTC
[ENA]
¡û
>W1511564220
LADO01000006
Bacillota
Peptococcaceae bacterium BRH_c4b [LADO]
36250
36325
+
Glu
TTC
[ENA]
¡û
>W1511564241
LADO01000045
Bacillota
Peptococcaceae bacterium BRH_c4b [LADO]
731
806
+
Glu
TTC
[ENA]
¡û
>W1511564249
LADO01000055
Bacillota
Peptococcaceae bacterium BRH_c4b [LADO]
51533
51608
+
Glu
TTC
[ENA]
¡û
>W11150369
AEVP01000006
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
23161
23086
-
Glu
TTC
[ENA]
¡û
>W11150386
AEVP01000025
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
25770
25845
+
Glu
TTC
[ENA]
¡û
>C121011424
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2106494
2106569
+
Glu
TTC
[Ensembl]
¡û
>C121011439
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2108156
2108231
+
Glu
TTC
[Ensembl]
¡û
>C121011461
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
4290639
4290564
-
Glu
TTC
[Ensembl]
¡û
>W121007284
AFZX01000106
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
5214
5289
+
Glu
TTC
[ENA]
¡û
>W121010355
AGJE01000011
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
224
299
+
Glu
TTC
[ENA]
¡û
>W121010366
AGJE01000018
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
2104
2179
+
Glu
TTC
[ENA]
¡û
>W121010387
AGJE01000034
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
9270
9345
+
Glu
TTC
[ENA]
¡û
>W121010527
AGJH01000014
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
87175
87250
+
Glu
TTC
[ENA]
¡û
>W121010537
AGJH01000035
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
29996
30071
+
Glu
TTC
[ENA]
¡û
>W121010544
AGJH01000057
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
1472
1397
-
Glu
TTC
[ENA]
¡û
>C131003231
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1739406
1739481
+
Glu
TTC
[Ensembl]
¡û
>C131003247
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1804869
1804944
+
Glu
TTC
[Ensembl]
¡û
>C131003271
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
3592558
3592483
-
Glu
TTC
[Ensembl]
¡û
>W1610752177
LNDB01000007
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
96765
96690
-
Glu
TTC
[ENA]
¡û
>W1610752190
LNDB01000020
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
1609
1534
-
Glu
TTC
[ENA]
¡û
>W1610781387
LOCK01000001
Bacillota
Desulfitobacterium hafniense [LOCK]
78794
78869
+
Glu
TTC
[ENA]
¡û
>W1610781419
LOCK01000048
Bacillota
Desulfitobacterium hafniense [LOCK]
1330
1255
-
Glu
TTC
[ENA]
¡û
>W1710583615
FQUY01000007
Bacillota
Desulforamulus putei DSM 12395 [FQUY]
82866
82791
-
Glu
TTC
[ENA]
¡û
>W1710583646
FQUY01000019
Bacillota
Desulforamulus putei DSM 12395 [FQUY]
20573
20648
+
Glu
TTC
[ENA]
¡û
>W1710583649
FQUY01000024
Bacillota
Desulforamulus putei DSM 12395 [FQUY]
839
764
-
Glu
TTC
[ENA]
¡û
>W1710586450
FQXF01000008
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
43608
43683
+
Glu
TTC
[ENA]
¡û
>W1710586462
FQXF01000012
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
85357
85282
-
Glu
TTC
[ENA]
¡û
>W1710586465
FQXF01000013
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
9100
9175
+
Glu
TTC
[ENA]
¡û
>W1710590070
FRAR01000028
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
53957
54032
+
Glu
TTC
[ENA]
¡û
>W1710593514
FRDN01000006
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
273852
273777
-
Glu
TTC
[ENA]
¡û
>W1710593525
FRDN01000013
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
376
301
-
Glu
TTC
[ENA]
¡û
>W1710593561
FRDN01000033
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
1896
1971
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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