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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238834 (33 seq.)
>W1710778000
LJCO01000041
Bacillota
Alicyclobacillus ferrooxydans [LJCO]
32675
32750
+
Lys
TTT
[ENA]
¡û
>W1711629658
MPPE01000058
Bacillota
Tepidanaerobacter sp. EBM-49 [MPPE]
67721
67796
+
Lys
TTT
[ENA]
¡û
>WENV181226060
OFDK01000012
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
97028
96953
-
Lys
TTT
[ENA]
¢þ
>WENV170003428
AGTN01330271
[AGTN] bioreactor metagenome; poplar biomass
163
88
-
Lys
TTT
[ENA]
¢þ
>WENV170562953
CZCB01007904
[CZCB] anaerobic digester metagenome; anaerobic digester
6767
6692
-
Lys
TTT
[ENA]
¢þ
>WENV170563006
CZCB01008631
[CZCB] anaerobic digester metagenome; anaerobic digester
243
168
-
Lys
TTT
[ENA]
¢þ
>WENV170563056
CZCB01009239
[CZCB] anaerobic digester metagenome; anaerobic digester
2473
2548
+
Lys
TTT
[ENA]
¢þ
>WENV170563242
CZCB01012374
[CZCB] anaerobic digester metagenome; anaerobic digester
8065
8140
+
Lys
TTT
[ENA]
¢þ
>WENV170643934
JMBV01011521
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
599
674
+
Lys
TTT
[ENA]
¢þ
>WENV170644528
JMBW01024847
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
451
526
+
Lys
TTT
[ENA]
¢þ
>WENV170688553
LFRM01250988
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3857
3782
-
Lys
TTT
[ENA]
¢þ
>WENV170968474
MTKW01009962
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3241
3316
+
Lys
TTT
[ENA]
¢þ
>WENV170970131
MTKW01053932
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
121
46
-
Lys
TTT
[ENA]
¢þ
>C181115596
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
772118
772043
-
Lys
TTT
-
¡û
>C191031599
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
737299
737224
-
Lys
TTT
-
¡û
>C191031654
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
772119
772044
-
Lys
TTT
-
¡û
>C191072265
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
772130
772055
-
Lys
TTT
-
¡û
>W1910647144
LXPC01000002
Bacillota
Dehalobacter sp. MCB1 [LXPC]
25547
25472
-
Lys
TTT
[ENA]
¡û
>W1911769135
QXHL01000003
Bacillota
Alicyclobacillaceae bacterium I2511 I2511 [QXHL]
576
501
-
Lys
TTT
[ENA]
¡û
>W10115280
ADJQ01000002
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
189070
189145
+
Lys
TTT
[ENA]
¡û
>C11108792
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
772117
772042
-
Lys
TTT
[Ensembl]
¡û
>W11118866
ADJQ01000002
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
189070
189145
+
Lys
TTT
[ENA]
¡û
>W1511644710
LDXJ01000036
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
21936
22011
+
Lys
TTT
[ENA]
¡û
>W1610061636
BCMU01000006
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
291689
291764
+
Lys
TTT
[ENA]
¡û
>W1610605724
LFSF01000035
Bacillota
Clostridiales bacterium DTU073 [LFSF]
3857
3782
-
Lys
TTT
[ENA]
¡û
>W1610642186
LJCO01000041
Bacillota
Alicyclobacillus ferrooxydans [LJCO]
32675
32750
+
Lys
TTT
[ENA]
¡û
>W1710059301
BCMU01000006
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
291689
291764
+
Lys
TTT
[ENA]
¡û
>W1710516527
FNCP01000071
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
399
474
+
Lys
TTT
[ENA]
¡û
>W1710589477
FRAF01000006
Bacillota
Alicyclobacillus montanus USBA-503 [FRAF]
109591
109666
+
Lys
TTT
[ENA]
¡û
>W1710605247
FWWT01000014
Bacillota
Desulfonispora thiosulfatigenes DSM 11270 [FWWT]
72233
72308
+
Lys
TTT
[ENA]
¡û
>W1710605260
FWWT01000016
Bacillota
Desulfonispora thiosulfatigenes DSM 11270 [FWWT]
152005
152080
+
Lys
TTT
[ENA]
¡û
>W1710605278
FWWT01000022
Bacillota
Desulfonispora thiosulfatigenes DSM 11270 [FWWT]
323460
323535
+
Lys
TTT
[ENA]
¡û
>W1710727011
LFSF01000035
Bacillota
Clostridiales bacterium DTU073 [LFSF]
3857
3782
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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