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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238852 (20 seq.)
>W1711434416
MIMZ01000012
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
61995
62070
+
Ala
GGC
[ENA]
¡û
>C171101768
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
1609596
1609671
+
Ala
GGC
-
¡û
>WENV180176391
OAWD01000081
[OAWD] human gut metagenome; faeces
3553
3628
+
Ala
GGC
[ENA]
¢þ
>WENV180498287
OCAG01000047
[OCAG] human gut metagenome; faeces
20481
20556
+
Ala
GGC
[ENA]
¢þ
>WENV180504275
OCAN01001120
[OCAN] human gut metagenome; faeces
5690
5615
-
Ala
GGC
[ENA]
¢þ
>WENV181346537
OFML01032921
[OFML] human gut metagenome; human gut
77
152
+
Ala
GGC
[ENA]
¢þ
>WENV182403161
OIET01001027
[OIET] human gut metagenome; human gut
2020
2095
+
Ala
GGC
[ENA]
¢þ
>WENV182405405
OIEV01004033
[OIEV] human gut metagenome; human gut
235
160
-
Ala
GGC
[ENA]
¢þ
>WENV182798202
OJTE01005568
[OJTE] human gut metagenome; human gut
460
535
+
Ala
GGC
[ENA]
¢þ
>WENV182836563
OKFX01006396
[OKFX] human gut metagenome; human gut
717
792
+
Ala
GGC
[ENA]
¢þ
>C191064442
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
1964422
1964347
-
Ala
GGC
-
¡û
>C191219525
LR215983
Bacillota
Eubacterium limosum [LR215983]
3172517
3172442
-
Ala
GGC
-
¡û
>W1810609759
QGUD01000010
Bacillota
Eubacterium limosum 8486cho [QGUD]
92022
91947
-
Ala
GGC
[ENA]
¡û
>W1810871740
QUDF01000012
Bacillota
Eubacterium sp. AM05-23 [QUDF]
62544
62619
+
Ala
GGC
[ENA]
¡û
>C11108829
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
3512306
3512231
-
Ala
GGC
[Ensembl]
¡û
>W1511480156
JWIS01000010
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
642695
642620
-
Ala
GGC
[ENA]
¡û
>C161037778
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
803716
803791
+
Ala
GGC
[Ensembl]
¡û
>W1710525034
FNJF01000009
Bacillota
Eubacterium maltosivorans limosum [FNJF]
38808
38883
+
Ala
GGC
[ENA]
¡û
>W1710571964
FOWI01000005
Bacillota
Eubacterium callanderi [FOWI]
32119
32194
+
Ala
GGC
[ENA]
¡û
>W1710591264
FRBP01000001
Bacillota
Eubacterium callanderi [FRBP]
389150
389075
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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