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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238853 (137 seq.)
>W1710778584
LJDB01000013
Bacillota
Epulopiscium sp. SCG-B11WGA-EpuloA1 [LJDB]
19402
19474
+
Val
TAC
[ENA]
¡û
>W1710778593
LJDB01000043
Bacillota
Epulopiscium sp. SCG-B11WGA-EpuloA1 [LJDB]
150105
150031
-
Val
TAC
[ENA]
¡û
>W1710778619
LJDB01000096
Bacillota
Epulopiscium sp. SCG-B11WGA-EpuloA1 [LJDB]
39001
39075
+
Val
TAC
[ENA]
¡û
>W1710784704
LJHC01000029
Bacillota
Epulopiscium sp. SCG-B05WGA-EpuloA1 [LJHC]
231
305
+
Val
TAC
[ENA]
¡û
>W1710784709
LJHC01000029
Bacillota
Epulopiscium sp. SCG-B05WGA-EpuloA1 [LJHC]
5352
5278
-
Val
TAC
[ENA]
¡û
>W1710784715
LJHC01000030
Bacillota
Epulopiscium sp. SCG-B05WGA-EpuloA1 [LJHC]
427
499
+
Val
TAC
[ENA]
¡û
>W1710784733
LJHC01000101
Bacillota
Epulopiscium sp. SCG-B05WGA-EpuloA1 [LJHC]
30558
30484
-
Val
TAC
[ENA]
¡û
>W1711434390
MIMZ01000004
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
158277
158352
+
Val
TAC
[ENA]
¡û
>W1711434421
MIMZ01000012
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
83401
83476
+
Val
TAC
[ENA]
¡û
>W1711579348
MNRP01000056
Bacillota
Clostridium sp. 26_22 [MNRP]
106894
106969
+
Val
TAC
[ENA]
¡û
>W1711579434
MNRS01000026
Bacillota
Clostridium sp. 28_17 [MNRS]
33660
33735
+
Val
TAC
[ENA]
¡û
>C171101773
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
1630999
1631074
+
Val
TAC
-
¡û
>C171101776
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2236816
2236891
+
Val
TAC
-
¡û
>C171130289
LT635480
Bacillota
Ndongobacter massiliensis Marseille-P3170 [LT635480]
412041
412116
+
Val
TAC
-
¡û
>WENV180176396
OAWD01000081
[OAWD] human gut metagenome; faeces
24960
25035
+
Val
TAC
[ENA]
¢þ
>WENV180176877
OAWD01002749
[OAWD] human gut metagenome; faeces
1437
1512
+
Val
TAC
[ENA]
¢þ
>WENV180198044
OBAB01077827
[OBAB] human gut metagenome; faeces
1
73
+
Val
TAC
[ENA]
¢þ
>WENV180445780
OBXA01025247
[OBXA] human gut metagenome; faeces
737
663
-
Val
TAC
[ENA]
¢þ
>WENV180446442
OBXC01000137
[OBXC] human gut metagenome; faeces
76019
75945
-
Val
TAC
[ENA]
¢þ
>WENV180446580
OBXC01000335
[OBXC] human gut metagenome; faeces
14274
14348
+
Val
TAC
[ENA]
¢þ
>WENV180447216
OBXC01025490
[OBXC] human gut metagenome; faeces
1
75
+
Val
TAC
[ENA]
¢þ
>WENV180447350
OBXC01090250
[OBXC] human gut metagenome; faeces
168
94
-
Val
TAC
[ENA]
¢þ
>WENV180455627
OBXO01015395
[OBXO] human gut metagenome; faeces
432
506
+
Val
TAC
[ENA]
¢þ
>WENV180498292
OCAG01000047
[OCAG] human gut metagenome; faeces
41887
41962
+
Val
TAC
[ENA]
¢þ
>WENV180504455
OCAN01003139
[OCAN] human gut metagenome; faeces
4863
4938
+
Val
TAC
[ENA]
¢þ
>WENV180680839
OCVV012663873
[OCVV] gut metagenome; gut
170
245
+
Val
TAC
[ENA]
¢þ
>WENV180680840
OCVV012663873
[OCVV] gut metagenome; gut
170
245
+
Val
TAC
[ENA]
¢þ
>WENV180681441
OCVV012769903
[OCVV] gut metagenome; gut
82
7
-
Val
TAC
[ENA]
¢þ
>WENV180681442
OCVV012769903
[OCVV] gut metagenome; gut
82
7
-
Val
TAC
[ENA]
¢þ
>WENV180683591
OCVV012843325
[OCVV] gut metagenome; gut
354
279
-
Val
TAC
[ENA]
¢þ
>WENV180683595
OCVV012843325
[OCVV] gut metagenome; gut
354
279
-
Val
TAC
[ENA]
¢þ
>WENV180774567
ODIJ01034810
[ODIJ] human metagenome; G_DNA_Tongue dorsum
444
369
-
Val
TAC
[ENA]
¢þ
>WENV180950167
ODUG01098620
[ODUG] human metagenome; G_DNA_Tongue dorsum
80
155
+
Val
TAC
[ENA]
¢þ
>WENV180986197
ODVJ01059620
[ODVJ] human metagenome; G_DNA_Tongue dorsum
64
139
+
Val
TAC
[ENA]
¢þ
>WENV181039453
ODXQ01022855
[ODXQ] human metagenome; G_DNA_Tongue dorsum
161
236
+
Val
TAC
[ENA]
¢þ
>WENV181058131
ODYL01004022
[ODYL] human metagenome; G_DNA_Tongue dorsum
2583
2508
-
Val
TAC
[ENA]
¢þ
>WENV181075115
OEAO01072774
[OEAO] human metagenome; G_DNA_Tongue dorsum
58
133
+
Val
TAC
[ENA]
¢þ
>WENV181112703
OEEL01002426
[OEEL] human metagenome; G_DNA_Tongue dorsum
572
647
+
Val
TAC
[ENA]
¢þ
>WENV181138781
OEGN01000696
[OEGN] human metagenome; G_DNA_Tongue dorsum
133
208
+
Val
TAC
[ENA]
¢þ
>WENV181172945
OEIV011092230
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
222
147
-
Val
TAC
[ENA]
¢þ
>WENV181346214
OFML01007044
[OFML] human gut metagenome; human gut
914
989
+
Val
TAC
[ENA]
¢þ
>WENV181449119
OGDW01017196
[OGDW] metagenome; Human gut stool
1137
1212
+
Val
TAC
[ENA]
¢þ
>WENV181586894
OGKG01004384
[OGKG] metagenome; Human gut stool
1749
1824
+
Val
TAC
[ENA]
¢þ
>WENV181595685
OGKW01017196
[OGKW] metagenome; Human gut stool
1137
1212
+
Val
TAC
[ENA]
¢þ
>WENV181941809
OGYY01010274
[OGYY] human gut metagenome; faeces
2334
2259
-
Val
TAC
[ENA]
¢þ
>WENV181954669
OGZK01000173
[OGZK] human gut metagenome; faeces
41828
41753
-
Val
TAC
[ENA]
¢þ
>WENV181987848
OHAN01001380
[OHAN] human gut metagenome; faeces
14293
14218
-
Val
TAC
[ENA]
¢þ
>WENV182247689
OHSN01031496
[OHSN] human gut metagenome; feces
137
62
-
Val
TAC
[ENA]
¢þ
>WENV182335636
OHZR01025760
[OHZR] human gut metagenome; feces
771
846
+
Val
TAC
[ENA]
¢þ
>WENV182364771
OICH01029350
[OICH] human gut metagenome; feces
251
176
-
Val
TAC
[ENA]
¢þ
>WENV182391412
OIEF01007449
[OIEF] human gut metagenome; human gut
184
109
-
Val
TAC
[ENA]
¢þ
>WENV182403345
OIET01003096
[OIET] human gut metagenome; human gut
2437
2512
+
Val
TAC
[ENA]
¢þ
>WENV182405381
OIEV01003662
[OIEV] human gut metagenome; human gut
2738
2813
+
Val
TAC
[ENA]
¢þ
>WENV182405398
OIEV01003973
[OIEV] human gut metagenome; human gut
1270
1195
-
Val
TAC
[ENA]
¢þ
>WENV182409595
OIFJ01000030
[OIFJ] human gut metagenome; stool
127187
127113
-
Val
TAC
[ENA]
¢þ
>WENV182409670
OIFJ01000091
[OIFJ] human gut metagenome; stool
79728
79654
-
Val
TAC
[ENA]
¢þ
>WENV182409676
OIFJ01000091
[OIFJ] human gut metagenome; stool
78609
78535
-
Val
TAC
[ENA]
¢þ
>WENV182613822
OJKA01017416
[OJKA] metagenome; faeces
667
595
-
Val
TAC
[ENA]
¢þ
>WENV182882005
OKSA01083853
[OKSA] human gut metagenome; faeces
157
82
-
Val
TAC
[ENA]
¢þ
>WENV182961541
OKWL01000044
[OKWL] human gut metagenome; stool
179
253
+
Val
TAC
[ENA]
¢þ
>WENV182961562
OKWL01000056
[OKWL] human gut metagenome; stool
127092
127018
-
Val
TAC
[ENA]
¢þ
>WENV182962544
OKWN01003596
[OKWN] human gut metagenome; stool
1283
1357
+
Val
TAC
[ENA]
¢þ
>WENV182962549
OKWN01003935
[OKWN] human gut metagenome; stool
1306
1232
-
Val
TAC
[ENA]
¢þ
>WENV182965808
OKWT01000240
[OKWT] human gut metagenome; stool
79
5
-
Val
TAC
[ENA]
¢þ
>WENV182965832
OKWT01000389
[OKWT] human gut metagenome; stool
217
291
+
Val
TAC
[ENA]
¢þ
>WENV182968362
OKXB01001718
[OKXB] human gut metagenome; human gut
19089
19164
+
Val
TAC
[ENA]
¢þ
>WENV183181099
OLPI01002999
[OLPI] human gut metagenome; faeces
4623
4698
+
Val
TAC
[ENA]
¢þ
>WENV183184799
OLPN01001206
[OLPN] human gut metagenome; faeces
21125
21050
-
Val
TAC
[ENA]
¢þ
>WENV183321951
OLVX01000388
[OLVX] human gut metagenome; faeces
22853
22928
+
Val
TAC
[ENA]
¢þ
>WENV183322887
OLVX01007868
[OLVX] human gut metagenome; faeces
1349
1274
-
Val
TAC
[ENA]
¢þ
>WENV183338231
OLWJ01042453
[OLWJ] human gut metagenome; feces
137
212
+
Val
TAC
[ENA]
¢þ
>WENV170721959
LSQX01210885
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
97840
97915
+
Val
TAC
[ENA]
¢þ
>WENV170724948
LSQX01324470
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
34107
34032
-
Val
TAC
[ENA]
¢þ
>WENV170784802
MDSO01000133
[MDSO] gut metagenome; Stomach gut content
11285
11213
-
Val
TAC
[ENA]
¢þ
>WENV170784835
MDSO01000561
[MDSO] gut metagenome; Stomach gut content
1503
1577
+
Val
TAC
[ENA]
¢þ
>WENV170785009
MDSO01164850
[MDSO] gut metagenome; Stomach gut content
445
519
+
Val
TAC
[ENA]
¢þ
>WENV170785051
MDSP01000001
[MDSP] gut metagenome; Stomach gut content
21407
21335
-
Val
TAC
[ENA]
¢þ
>WENV170785055
MDSP01000025
[MDSP] gut metagenome; Stomach gut content
35268
35196
-
Val
TAC
[ENA]
¢þ
>WENV170785066
MDSP01000029
[MDSP] gut metagenome; Stomach gut content
743
815
+
Val
TAC
[ENA]
¢þ
>WENV170785072
MDSP01000032
[MDSP] gut metagenome; Stomach gut content
12117
12043
-
Val
TAC
[ENA]
¢þ
>WENV170785093
MDSP01000121
[MDSP] gut metagenome; Stomach gut content
16819
16745
-
Val
TAC
[ENA]
¢þ
>C191064395
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
6701
6776
+
Val
TAC
-
¡û
>C191064447
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
1901916
1901841
-
Val
TAC
-
¡û
>C191128865
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
672557
672631
+
Val
TAC
-
¡û
>C191128888
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
831076
831148
+
Val
TAC
-
¡û
>C191128934
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
4518248
4518174
-
Val
TAC
-
¡û
>C191128944
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
4369622
4369547
-
Val
TAC
-
¡û
>C191128951
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
3960540
3960466
-
Val
TAC
-
¡û
>C191128956
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
3959447
3959373
-
Val
TAC
-
¡û
>C191219530
LR215983
Bacillota
Eubacterium limosum [LR215983]
3151107
3151032
-
Val
TAC
-
¡û
>C191219534
LR215983
Bacillota
Eubacterium limosum [LR215983]
2481392
2481317
-
Val
TAC
-
¡û
>W1810071104
PEDL01000016
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
89673
89599
-
Val
TAC
[ENA]
¡û
>W1810071118
PEDL01000030
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
463
537
+
Val
TAC
[ENA]
¡û
>W1810071129
PEDL01000041
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
10107
10035
-
Val
TAC
[ENA]
¡û
>W1810609741
QGUD01000002
Bacillota
Eubacterium limosum 8486cho [QGUD]
5356
5281
-
Val
TAC
[ENA]
¡û
>W1810609764
QGUD01000010
Bacillota
Eubacterium limosum 8486cho [QGUD]
70619
70544
-
Val
TAC
[ENA]
¡û
>W1810871716
QUDF01000004
Bacillota
Eubacterium sp. AM05-23 [QUDF]
55984
56059
+
Val
TAC
[ENA]
¡û
>W1810871745
QUDF01000012
Bacillota
Eubacterium sp. AM05-23 [QUDF]
83947
84022
+
Val
TAC
[ENA]
¡û
>W10118855
ADVF01000001
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
17868
17794
-
Val
TAC
[ENA]
¡û
>W10118891
ADVF01000020
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
17121
17193
+
Val
TAC
[ENA]
¡û
>W10118919
ADVF01000053
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
686
760
+
Val
TAC
[ENA]
¡û
>W10118929
ADVF01000064
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
11222
11148
-
Val
TAC
[ENA]
¡û
>W10118934
ADVF01000064
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
10128
10054
-
Val
TAC
[ENA]
¡û
>W10118953
ADVF01000102
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
595
671
+
Val
TAC
[ENA]
¡û
>C11105509
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
15604
15678
+
Val
TAC
[Ensembl]
¡û
>C11105532
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
173331
173403
+
Val
TAC
[Ensembl]
¡û
>C11105580
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3714710
3714636
-
Val
TAC
[Ensembl]
¡û
>C11105590
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3620070
3619994
-
Val
TAC
[Ensembl]
¡û
>C11105597
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3253829
3253755
-
Val
TAC
[Ensembl]
¡û
>C11105602
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3252736
3252662
-
Val
TAC
[Ensembl]
¡û
>C11108834
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
3490899
3490824
-
Val
TAC
[Ensembl]
¡û
>C11108837
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
2970004
2969929
-
Val
TAC
[Ensembl]
¡û
>W1510725185
CXYW01000002
Bacillota
Niameybacter massiliensis mt14 [CXYW]
16760
16686
-
Val
TAC
[ENA]
¡û
>W1510725219
CXYW01000009
Bacillota
Niameybacter massiliensis mt14 [CXYW]
139548
139474
-
Val
TAC
[ENA]
¡û
>W1510725220
CXYW01000011
Bacillota
Niameybacter massiliensis mt14 [CXYW]
53551
53626
+
Val
TAC
[ENA]
¡û
>W1510725250
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
2721763
2721689
-
Val
TAC
[ENA]
¡û
>W1510725256
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
2718252
2718178
-
Val
TAC
[ENA]
¡û
>W1510725269
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
1793720
1793646
-
Val
TAC
[ENA]
¡û
>W1510725293
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
381882
381808
-
Val
TAC
[ENA]
¡û
>W11125027
ADVF01000001
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
17868
17794
-
Val
TAC
[ENA]
¡û
>W11125063
ADVF01000020
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
17121
17193
+
Val
TAC
[ENA]
¡û
>W11125091
ADVF01000053
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
686
760
+
Val
TAC
[ENA]
¡û
>W11125101
ADVF01000064
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
11222
11148
-
Val
TAC
[ENA]
¡û
>W11125106
ADVF01000064
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
10128
10054
-
Val
TAC
[ENA]
¡û
>W11125125
ADVF01000102
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
595
671
+
Val
TAC
[ENA]
¡û
>W1511480161
JWIS01000010
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
621292
621217
-
Val
TAC
[ENA]
¡û
>W1511480164
JWIS01000010
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
17352
17277
-
Val
TAC
[ENA]
¡û
>C161037783
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
825117
825192
+
Val
TAC
[Ensembl]
¡û
>C161037824
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
2772483
2772408
-
Val
TAC
[Ensembl]
¡û
>W1610046314
BBCG01000021
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
45442
45369
-
Val
TAC
[ENA]
¡û
>W1710043110
BBCG01000021
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
45442
45369
-
Val
TAC
[ENA]
¡û
>W1710525039
FNJF01000009
Bacillota
Eubacterium maltosivorans limosum [FNJF]
60222
60297
+
Val
TAC
[ENA]
¡û
>W1710525065
FNJF01000063
Bacillota
Eubacterium maltosivorans limosum [FNJF]
904
829
-
Val
TAC
[ENA]
¡û
>W1710571969
FOWI01000005
Bacillota
Eubacterium callanderi [FOWI]
53526
53601
+
Val
TAC
[ENA]
¡û
>W1710571991
FOWI01000009
Bacillota
Eubacterium callanderi [FOWI]
196634
196709
+
Val
TAC
[ENA]
¡û
>W1710591269
FRBP01000001
Bacillota
Eubacterium callanderi [FRBP]
367752
367677
-
Val
TAC
[ENA]
¡û
>W1710591273
FRBP01000002
Bacillota
Eubacterium callanderi [FRBP]
173660
173585
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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