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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238858 (21 seq.)
>W1711434406
MIMZ01000006
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
20916
20841
-
Gln
TTG
[ENA]
¡û
>C171101788
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2651537
2651612
+
Gln
TTG
-
¡û
>WENV180176841
OAWD01002138
[OAWD] human gut metagenome; faeces
2106
2031
-
Gln
TTG
[ENA]
¢þ
>WENV180498550
OCAG01000396
[OCAG] human gut metagenome; faeces
2098
2023
-
Gln
TTG
[ENA]
¢þ
>WENV180504424
OCAN01002669
[OCAN] human gut metagenome; faeces
4445
4520
+
Gln
TTG
[ENA]
¢þ
>WENV182403352
OIET01003179
[OIET] human gut metagenome; human gut
320
245
-
Gln
TTG
[ENA]
¢þ
>WENV182405348
OIEV01003345
[OIEV] human gut metagenome; human gut
3544
3619
+
Gln
TTG
[ENA]
¢þ
>WENV182817065
OJZH01008980
[OJZH] human gut metagenome; human gut
125
200
+
Gln
TTG
[ENA]
¢þ
>WENV182836556
OKFX01005194
[OKFX] human gut metagenome; human gut
517
592
+
Gln
TTG
[ENA]
¢þ
>C191064414
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3776603
3776678
+
Gln
TTG
-
¡û
>C191219489
LR215983
Bacillota
Eubacterium limosum [LR215983]
267587
267662
+
Gln
TTG
-
¡û
>W1810609736
QGUD01000001
Bacillota
Eubacterium limosum 8486cho [QGUD]
20968
20893
-
Gln
TTG
[ENA]
¡û
>W1810871734
QUDF01000007
Bacillota
Eubacterium sp. AM05-23 [QUDF]
254271
254346
+
Gln
TTG
[ENA]
¡û
>C11108807
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
923119
923194
+
Gln
TTG
[Ensembl]
¡û
>W1511480179
JWIS01000018
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
20826
20751
-
Gln
TTG
[ENA]
¡û
>C161037801
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3274292
3274217
-
Gln
TTG
[Ensembl]
¡û
>W1710525051
FNJF01000028
Bacillota
Eubacterium maltosivorans limosum [FNJF]
20717
20642
-
Gln
TTG
[ENA]
¡û
>W1710530500
FNOU01000002
Bacillota
Eubacterium barkeri [FNOU]
45984
45909
-
Gln
TTG
[ENA]
¡û
>W1710533804
FNRK01000010
Bacillota
Eubacterium aggregans [FNRK]
37146
37071
-
Gln
TTG
[ENA]
¡û
>W1710571958
FOWI01000001
Bacillota
Eubacterium callanderi [FOWI]
701069
701144
+
Gln
TTG
[ENA]
¡û
>W1710591300
FRBP01000009
Bacillota
Eubacterium callanderi [FRBP]
200159
200234
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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