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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238860 (20 seq.)
>W1711434440
MIMZ01000025
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
147601
147526
-
Thr
GGT
[ENA]
¡û
>C171101767
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
1369990
1370065
+
Thr
GGT
-
¡û
>WENV180176514
OAWD01000202
[OAWD] human gut metagenome; faeces
17721
17646
-
Thr
GGT
[ENA]
¢þ
>WENV180498518
OCAG01000333
[OCAG] human gut metagenome; faeces
2259
2184
-
Thr
GGT
[ENA]
¢þ
>WENV180504491
OCAN01003957
[OCAN] human gut metagenome; faeces
2166
2241
+
Thr
GGT
[ENA]
¢þ
>WENV181346339
OFML01012965
[OFML] human gut metagenome; human gut
1954
1879
-
Thr
GGT
[ENA]
¢þ
>WENV181897170
OGXS01044610
[OGXS] human gut metagenome; faeces
121
196
+
Thr
GGT
[ENA]
¢þ
>WENV182403226
OIET01001553
[OIET] human gut metagenome; human gut
2247
2172
-
Thr
GGT
[ENA]
¢þ
>WENV182405215
OIEV01001389
[OIEV] human gut metagenome; human gut
10146
10071
-
Thr
GGT
[ENA]
¢þ
>WENV182892239
OKSH01042399
[OKSH] human gut metagenome; faeces
267
192
-
Thr
GGT
[ENA]
¢þ
>C191064441
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
2172556
2172481
-
Thr
GGT
-
¡û
>C191219524
LR215983
Bacillota
Eubacterium limosum [LR215983]
3494298
3494223
-
Thr
GGT
-
¡û
>W1810609758
QGUD01000006
Bacillota
Eubacterium limosum 8486cho [QGUD]
30284
30209
-
Thr
GGT
[ENA]
¡û
>W1810871703
QUDF01000001
Bacillota
Eubacterium sp. AM05-23 [QUDF]
363234
363309
+
Thr
GGT
[ENA]
¡û
>C11108828
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
3726008
3725933
-
Thr
GGT
[Ensembl]
¡û
>W1511480154
JWIS01000009
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
125083
125158
+
Thr
GGT
[ENA]
¡û
>C161037777
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
595330
595405
+
Thr
GGT
[Ensembl]
¡û
>W1710525046
FNJF01000018
Bacillota
Eubacterium maltosivorans limosum [FNJF]
4766
4691
-
Thr
GGT
[ENA]
¡û
>W1710571999
FOWI01000010
Bacillota
Eubacterium callanderi [FOWI]
2250
2175
-
Thr
GGT
[ENA]
¡û
>W1710591315
FRBP01000017
Bacillota
Eubacterium callanderi [FRBP]
123795
123870
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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