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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238989 (42 seq.)
>W1711048237
LRPL01000382
Bacillota
Anaerococcus hydrogenalis [LRPL]
77
2
-
Phe
GAA
[ENA]
¡û
>W1711091109
LTBC01000013
Bacillota
Moorella mulderi DSM 14980 [LTBC]
12220
12145
-
Phe
GAA
[ENA]
¡û
>W1711352258
MDDB01000002
Bacillota
Moorella thermoacetica [MDDB]
280592
280667
+
Phe
GAA
[ENA]
¡û
>W1711352308
MDDC01000002
Bacillota
Moorella thermoacetica [MDDC]
21922
21997
+
Phe
GAA
[ENA]
¡û
>W1711352361
MDDD01000003
Bacillota
Moorella thermoacetica [MDDD]
41533
41608
+
Phe
GAA
[ENA]
¡û
>W1711352402
MDDE01000001
Bacillota
Moorella thermoacetica [MDDE]
319202
319277
+
Phe
GAA
[ENA]
¡û
>W1711428533
MIHH01000003
Bacillota
Moorella thermoacetica [MIHH]
68210
68285
+
Phe
GAA
[ENA]
¡û
>W1711428593
MIIF01000007
Bacillota
Moorella thermoacetica [MIIF]
13046
13121
+
Phe
GAA
[ENA]
¡û
>C171055208
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
2213852
2213777
-
Phe
GAA
-
¡û
>C171055209
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
2037184
2037109
-
Phe
GAA
-
¡û
>C171058974
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
1842570
1842495
-
Phe
GAA
-
¡û
>C014192
CP000232
Bacillota
Moorella thermoacetica [CP000232]
1874263
1874188
-
Phe
GAA
[Ensembl]
¡û
>w022382
AAWL01000023
Bacillota
Thermosinus carboxydivorans Nor1 [AAWL]
11378
11455
+
Phe
GAA
[ENA]
¡û
>w022375
AAWL01000011
Bacillota
Thermosinus carboxydivorans Nor1 [AAWL]
75149
75226
+
Phe
GAA
[ENA]
¡û
>w022371
AAWL01000011
Bacillota
Thermosinus carboxydivorans Nor1 [AAWL]
53617
53694
+
Phe
GAA
[ENA]
¡û
>W141206397
AZMC01000302
Bacillota
Negativicoccus succinicivorans DORA_17_25 [AZMC]
1720
1645
-
Phe
GAA
[ENA]
¡û
>W141206407
AZMC01000329
Bacillota
Negativicoccus succinicivorans DORA_17_25 [AZMC]
99104
99179
+
Phe
GAA
[ENA]
¡û
>W141229782
BARR01000006
Bacillota
Moorella thermoacetica Y72 [BARR]
121263
121188
-
Phe
GAA
[ENA]
¡û
>WENV182842732
OKIF01002528
[OKIF] human gut metagenome; human gut
817
892
+
Phe
GAA
[ENA]
¢þ
>WENV170563497
CZCB01020089
[CZCB] anaerobic digester metagenome; anaerobic digester
3100
3025
-
Phe
GAA
[ENA]
¢þ
>WENV170674801
LCWY01004551
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
165
240
+
Phe
GAA
[ENA]
¢þ
>WENV170674896
LCWY01019170
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
392
317
-
Phe
GAA
[ENA]
¢þ
>WENV170718295
LSQX01069736
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1633
1558
-
Phe
GAA
[ENA]
¢þ
>WENV170968320
MTKW01008145
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4500
4425
-
Phe
GAA
[ENA]
¢þ
>C191002344
AP018449
Bacillota
Methylomusa anaerophila MMFC1 [AP018449]
1453051
1453126
+
Phe
GAA
-
¡û
>C191002368
AP018449
Bacillota
Methylomusa anaerophila MMFC1 [AP018449]
3291451
3291526
+
Phe
GAA
-
¡û
>C191002374
AP018449
Bacillota
Methylomusa anaerophila MMFC1 [AP018449]
3794149
3794224
+
Phe
GAA
-
¡û
>C191073450
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
1890695
1890620
-
Phe
GAA
-
¡û
>W09100930
AADT03000013
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
59738
59663
-
Phe
GAA
[ENA]
¡û
>W1910180071
BJKN01000002
Bacillota
Moorella sp. E308F [BJKN]
1196359
1196284
-
Phe
GAA
[ENA]
¡û
>W1910180103
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
1986915
1986990
+
Phe
GAA
[ENA]
¡û
>W1810010421
BFFN01000001
Bacillota
Moorella sp. Hama-1 [BFFN]
252908
252833
-
Phe
GAA
[ENA]
¡û
>W1810367276
PVXL01000025
Bacillota
Moorella stamsii DSM 26271 [PVXL]
30375
30450
+
Phe
GAA
[ENA]
¡û
>W1810367355
PVXM01000058
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
49961
50036
+
Phe
GAA
[ENA]
¡û
>C151094378
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
1768773
1768698
-
Phe
GAA
-
¡û
>C151094429
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
1868300
1868225
-
Phe
GAA
-
¡û
>W1510100248
CELZ01000016
Bacillota
Moorella glycerini NMP [CELZ]
29088
29163
+
Phe
GAA
[ENA]
¡û
>W1511327343
JQID01000071
Bacillota
Desulfosporosinus sp. Tol-M [JQID]
66837
66762
-
Phe
GAA
[ENA]
¡û
>W1610925308
LTBC01000013
Bacillota
Moorella mulderi DSM 14980 [LTBC]
12220
12145
-
Phe
GAA
[ENA]
¡û
>W1710515429
FNBU01000010
Bacillota
Sporolituus thermophilus DSM 23256 [FNBU]
36502
36427
-
Phe
GAA
[ENA]
¡û
>W1710515433
FNBU01000010
Bacillota
Sporolituus thermophilus DSM 23256 [FNBU]
25483
25408
-
Phe
GAA
[ENA]
¡û
>W1710515442
FNBU01000012
Bacillota
Sporolituus thermophilus DSM 23256 [FNBU]
13554
13479
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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