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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239033 (22 seq.)
>W1710912943
LNSA01000035
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
38178
38103
-
Phe
GAA
[ENA]
¡û
>W1710912985
LNSB01000041
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
28598
28673
+
Phe
GAA
[ENA]
¡û
>W1710913006
LNSC01000011
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
86468
86393
-
Phe
GAA
[ENA]
¡û
>W1711259790
LYVN01000091
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
754
679
-
Phe
GAA
[ENA]
¡û
>C171094542
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
75156
75231
+
Phe
GAA
-
¡û
>C171128405
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
953576
953651
+
Phe
GAA
-
¡û
>C019747
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
2016753
2016678
-
Phe
GAA
[Ensembl]
¡û
>WENV170645820
JPYU01094936
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
223
148
-
Phe
GAA
[ENA]
¢þ
>C191000556
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
653981
654056
+
Phe
GAA
-
¡û
>C191163790
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
1695441
1695516
+
Phe
GAA
-
¡û
>W09102938
AAIP01000001
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
225480
225405
-
Phe
GAA
[ENA]
¡û
>W1910744373
MIAM01000005
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
24414
24489
+
Phe
GAA
[ENA]
¡û
>W1530022305
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
2269542
2269617
+
Phe
GAA
[ENA]
¡û
>W1510015771
BBRO01000001
Alphaproteobacteria
Sphingopyxis sp. C-1 [BBRO]
1178816
1178891
+
Phe
GAA
[ENA]
¡û
>W1511221172
JNFC01000038
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
18222
18297
+
Phe
GAA
[ENA]
¡û
>W1511324672
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
907480
907405
-
Phe
GAA
[ENA]
¡û
>W1610056955
BBWR01000011
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
15451
15376
-
Phe
GAA
[ENA]
¡û
>W1610771302
LNSA01000035
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
38178
38103
-
Phe
GAA
[ENA]
¡û
>W1610771344
LNSB01000041
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
28598
28673
+
Phe
GAA
[ENA]
¡û
>W1610771365
LNSC01000011
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
86468
86393
-
Phe
GAA
[ENA]
¡û
>W1710053654
BBWR01000011
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
15451
15376
-
Phe
GAA
[ENA]
¡û
>W1710540038
FNWK01000001
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
394145
394070
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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