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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239099 (15 seq.)
>WENV180022332
FTFY01000987
[FTFY] metagenome; soil
5015
5090
+
Lys
CTT
[ENA]
¢þ
>WENV180026504
FTIU01000389
[FTIU] metagenome; soil
14545
14470
-
Lys
CTT
[ENA]
¢þ
>WENV180026646
FTIU01009552
[FTIU] metagenome; soil
54
129
+
Lys
CTT
[ENA]
¢þ
>WENV180029675
FTJL01000201
[FTJL] metagenome; soil
1377
1302
-
Lys
CTT
[ENA]
¢þ
>W1911572376
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
4718032
4718107
+
Lys
CTT
[ENA]
¡û
>W1810399991
PYFP01000001
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
409155
409230
+
Lys
CTT
[ENA]
¡û
>C151062591
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
2232077
2232152
+
Lys
CTT
[Ensembl]
¡û
>C11105091
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
3071821
3071746
-
Lys
CTT
[Ensembl]
¡û
>C161053612
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
3540019
3539944
-
Lys
CTT
[Ensembl]
¡û
>C161053706
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
3429026
3428951
-
Lys
CTT
[Ensembl]
¡û
>C161053780
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
2151735
2151810
+
Lys
CTT
[Ensembl]
¡û
>W1710530345
FNOR01000001
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
164408
164483
+
Lys
CTT
[ENA]
¡û
>W1710556436
FOKF01000002
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
127617
127692
+
Lys
CTT
[ENA]
¡û
>W1710557547
FOLC01000037
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
11805
11880
+
Lys
CTT
[ENA]
¡û
>W1710564204
FOQI01000001
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
686419
686344
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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