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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239110 (38 seq.)
>W1711081027
LSRN01000006
Bacillota
Alkalibacterium sp. 20 [LSRN]
430
356
-
Asn
GTT
[ENA]
¡û
>W1711081040
LSRN01000053
Bacillota
Alkalibacterium sp. 20 [LSRN]
145
219
+
Asn
GTT
[ENA]
¡û
>W1711081042
LSRN01000066
Bacillota
Alkalibacterium sp. 20 [LSRN]
149
223
+
Asn
GTT
[ENA]
¡û
>W1711081044
LSRN01000085
Bacillota
Alkalibacterium sp. 20 [LSRN]
482
410
-
Asn
GTT
[ENA]
¡û
>WENV170690905
LFRM01369796
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
589
663
+
Asn
GTT
[ENA]
¢þ
>C191024691
CP023434
Bacillota
Suicoccus acidiformans ZY16052 [CP023434]
235552
235626
+
Asn
GTT
-
¡û
>C191024745
CP023434
Bacillota
Suicoccus acidiformans ZY16052 [CP023434]
2521464
2521390
-
Asn
GTT
-
¡û
>W141818065
JQLG01000004
Bacillota
Carnobacterium alterfunditum DSM 5972 [JQLG]
1367230
1367304
+
Asn
GTT
[ENA]
¡û
>W141818101
JQLG01000004
Bacillota
Carnobacterium alterfunditum DSM 5972 [JQLG]
2463295
2463221
-
Asn
GTT
[ENA]
¡û
>W141818115
JQLG01000004
Bacillota
Carnobacterium alterfunditum DSM 5972 [JQLG]
975
901
-
Asn
GTT
[ENA]
¡û
>W141818323
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
319569
319643
+
Asn
GTT
[ENA]
¡û
>W141818349
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
1365245
1365171
-
Asn
GTT
[ENA]
¡û
>W141818384
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
619434
619360
-
Asn
GTT
[ENA]
¡û
>W141818635
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
1185544
1185618
+
Asn
GTT
[ENA]
¡û
>W141818647
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
1194793
1194867
+
Asn
GTT
[ENA]
¡û
>W141818672
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
2356568
2356494
-
Asn
GTT
[ENA]
¡û
>W141820116
JQMR01000001
Bacillota
Carnobacterium mobile DSM 4848 [JQMR]
255337
255411
+
Asn
GTT
[ENA]
¡û
>W141820128
JQMR01000001
Bacillota
Carnobacterium mobile DSM 4848 [JQMR]
266149
266223
+
Asn
GTT
[ENA]
¡û
>W141820154
JQMR01000001
Bacillota
Carnobacterium mobile DSM 4848 [JQMR]
1444668
1444594
-
Asn
GTT
[ENA]
¡û
>C161028467
CP010796
Bacillota
Carnobacterium sp. CP1 [CP010796]
2101273
2101347
+
Asn
GTT
[Ensembl]
¡û
>C161028502
CP010796
Bacillota
Carnobacterium sp. CP1 [CP010796]
708525
708448
-
Asn
GTT
[Ensembl]
¡û
>C161028514
CP010796
Bacillota
Carnobacterium sp. CP1 [CP010796]
693391
693314
-
Asn
GTT
[Ensembl]
¡û
>W1710542055
FNYW01000001
Bacillota
Alkalibacterium gilvum [FNYW]
155500
155572
+
Asn
GTT
[ENA]
¡û
>W1710542064
FNYW01000010
Bacillota
Alkalibacterium gilvum [FNYW]
370
444
+
Asn
GTT
[ENA]
¡û
>W1710543763
FOAH01000008
Bacillota
Carnobacterium iners [FOAH]
81077
81003
-
Asn
GTT
[ENA]
¡û
>W1710543782
FOAH01000037
Bacillota
Carnobacterium iners [FOAH]
20
94
+
Asn
GTT
[ENA]
¡û
>W1710545405
FOBL01000020
Bacillota
Alkalibacterium putridalgicola [FOBL]
279
353
+
Asn
GTT
[ENA]
¡û
>W1710545412
FOBL01000031
Bacillota
Alkalibacterium putridalgicola [FOBL]
364
292
-
Asn
GTT
[ENA]
¡û
>W1710545416
FOBL01000032
Bacillota
Alkalibacterium putridalgicola [FOBL]
27793
27719
-
Asn
GTT
[ENA]
¡û
>W1710558332
FOLT01000010
Bacillota
Alkalibacterium subtropicum [FOLT]
60177
60103
-
Asn
GTT
[ENA]
¡û
>W1710558339
FOLT01000021
Bacillota
Alkalibacterium subtropicum [FOLT]
352
426
+
Asn
GTT
[ENA]
¡û
>W1710558340
FOLT01000022
Bacillota
Alkalibacterium subtropicum [FOLT]
579
507
-
Asn
GTT
[ENA]
¡û
>W1710594863
FSRN01000001
Bacillota
Carnobacterium alterfunditum [FSRN]
709789
709863
+
Asn
GTT
[ENA]
¡û
>W1710594899
FSRN01000001
Bacillota
Carnobacterium alterfunditum [FSRN]
1814483
1814409
-
Asn
GTT
[ENA]
¡û
>W1710594911
FSRN01000001
Bacillota
Carnobacterium alterfunditum [FSRN]
1805855
1805781
-
Asn
GTT
[ENA]
¡û
>W1710608720
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
1795443
1795517
+
Asn
GTT
[ENA]
¡û
>W1710608734
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
2099756
2099682
-
Asn
GTT
[ENA]
¡û
>W1710608758
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
411197
411123
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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