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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239119 (115 seq.)
>W1710797131
LJSU01000004
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
64827
64902
+
Thr
CGT
[ENA]
¡û
>W1711054857
LRUD01000018
Alphaproteobacteria
Celeribacter halophilus [LRUD]
53875
53950
+
Thr
CGT
[ENA]
¡û
>W1711124578
LUKH01000004
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
165903
165978
+
Thr
CGT
[ENA]
¡û
>W1711229676
LXYQ01000128
Alphaproteobacteria
Roseovarius indicus [LXYQ]
4238
4313
+
Thr
CGT
[ENA]
¡û
>W1711258971
LYUZ01000092
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
161053
161128
+
Thr
CGT
[ENA]
¡û
>W1711424945
MIEL01000004
Alphaproteobacteria
Pseudovibrio brasiliensis Ab134 [MIEL]
300823
300748
-
Thr
CGT
[ENA]
¡û
>W131183020
ARRM01000012
Alphaproteobacteria
Salipiger mucosus DSM 16094 [ARRM]
65627
65702
+
Thr
CGT
[ENA]
¡û
>W131231297
AUIJ01000003
Alphaproteobacteria
Sediminimonas qiaohouensis DSM 21189 [AUIJ]
7020
7095
+
Thr
CGT
[ENA]
¡û
>W1711642851
MPZQ01000008
Alphaproteobacteria
Thioclava sp. F28-4 [MPZQ]
55323
55398
+
Thr
CGT
[ENA]
¡û
>W1711642887
MPZR01000004
Alphaproteobacteria
Thioclava sp. F36-7 [MPZR]
103386
103311
-
Thr
CGT
[ENA]
¡û
>W1711642987
MPZT01000006
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
339573
339648
+
Thr
CGT
[ENA]
¡û
>W1711643024
MPZU01000003
Alphaproteobacteria
Thioclava sp. DLFJ5-1 [MPZU]
103387
103312
-
Thr
CGT
[ENA]
¡û
>W1711643080
MPZV01000004
Alphaproteobacteria
Thioclava sediminum TAW-CT134 [MPZV]
105002
104927
-
Thr
CGT
[ENA]
¡û
>W1711643171
MPZX01000004
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
339688
339763
+
Thr
CGT
[ENA]
¡û
>W1711704510
MSPP01000002
Alphaproteobacteria
Marivivens niveibacter MCCC 1A06712 [MSPP]
386076
386151
+
Thr
CGT
[ENA]
¡û
>W1711947214
NBNX01000004
Alphaproteobacteria
Thioclava sp. IC9 [NBNX]
103989
103914
-
Thr
CGT
[ENA]
¡û
>W1711947256
NBNY01000003
Alphaproteobacteria
Thioclava sp. F1Mire-8 [NBNY]
322283
322358
+
Thr
CGT
[ENA]
¡û
>W1711947308
NBNZ01000008
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
89579
89654
+
Thr
CGT
[ENA]
¡û
>W1711947341
NBOA01000004
Alphaproteobacteria
Thioclava sp. F34-6 [NBOA]
337306
337381
+
Thr
CGT
[ENA]
¡û
>W1711947388
NBOB01000005
Alphaproteobacteria
Thioclava sp. JM3 [NBOB]
322323
322398
+
Thr
CGT
[ENA]
¡û
>W1711959022
NBXF01000016
Alphaproteobacteria
Thioclava electrotropha ElOx9 [NBXF]
104499
104424
-
Thr
CGT
[ENA]
¡û
>W1712085160
NHTQ01000005
Alphaproteobacteria
Rhodobacteraceae bacterium WFHF2C18 [NHTQ]
7968
8043
+
Thr
CGT
[ENA]
¡û
>C171033678
CP014796
Alphaproteobacteria
Salipiger profundus JLT2016 [CP014796]
1481018
1481093
+
Thr
CGT
-
¡û
>C171035451
CP015093
Alphaproteobacteria
Salipiger abyssi JLT2014 [CP015093]
1571673
1571598
-
Thr
CGT
-
¡û
>C171072498
CP018076
Alphaproteobacteria
Sulfitobacter alexandrii AM1-D1 [CP018076]
3086112
3086037
-
Thr
CGT
-
¡û
>C171094333
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
407089
407164
+
Thr
CGT
-
¡û
>w018822
AATQ01000026
Alphaproteobacteria
Salipiger bermudensis HTCC2601 [AATQ]
9598
9675
+
Thr
CGT
[ENA]
¡û
>WENV180294132
OBIY01022470
[OBIY] beach sand metagenome; beach sand
101
176
+
Thr
CGT
[ENA]
¢þ
>WENV180370403
OBOH01091762
[OBOH] marine metagenome; ENVO:00002010
339
414
+
Thr
CGT
[ENA]
¢þ
>WENV180375361
OBOL01004324
[OBOL] marine metagenome; Surface water
886
961
+
Thr
CGT
[ENA]
¢þ
>WENV180389876
OBPK01001397
[OBPK] marine metagenome; Sterile flask
377
304
-
Thr
CGT
[ENA]
¢þ
>WENV180394216
OBPR01099220
[OBPR] marine metagenome; ENVO:00002042
192
267
+
Thr
CGT
[ENA]
¢þ
>WENV180395605
OBPT01053766
[OBPT] marine metagenome; ENVO:00002010 seawater
149
224
+
Thr
CGT
[ENA]
¢þ
>WENV180592428
OCOW01006092
[OCOW] marine metagenome; Sterivex cartridges
690
615
-
Thr
CGT
[ENA]
¢þ
>W141064392
APVH01000021
Alphaproteobacteria
Salipiger mucosus DSM 16094 [APVH]
65617
65692
+
Thr
CGT
[ENA]
¡û
>W141065748
AQQW01000005
Alphaproteobacteria
Roseivivax marinus 22II-s10s [AQQW]
113909
113834
-
Thr
CGT
[ENA]
¡û
>W141065774
AQQY01000003
Alphaproteobacteria
Actibacterium atlanticum 22II-S11-z10 [AQQY]
148485
148560
+
Thr
CGT
[ENA]
¡û
>WENV180687985
OCZA010038658
[OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
484
559
+
Thr
CGT
[ENA]
¢þ
>WENV181234459
OFEU01000166
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
9688
9613
-
Thr
CGT
[ENA]
¢þ
>W141151573
AXBE01000001
Alphaproteobacteria
Leisingera aquimarina DSM 24565 [AXBE]
842253
842178
-
Thr
CGT
[ENA]
¡û
>W141151785
AXBI01000017
Alphaproteobacteria
Leisingera caerulea DSM 24564 [AXBI]
1402584
1402659
+
Thr
CGT
[ENA]
¡û
>WENV182546336
OJBO01010478
[OJBO] seawater metagenome; Sea water
1064
989
-
Thr
CGT
[ENA]
¢þ
>WENV182547540
OJBS01023682
[OJBS] seawater metagenome; Sea water
134
59
-
Thr
CGT
[ENA]
¢þ
>WENV182585434
OJHH01022483
[OJHH] seawater metagenome; Sea water
736
811
+
Thr
CGT
[ENA]
¢þ
>W141279643
JAGL01000033
Alphaproteobacteria
Aminobacter sp. J41 [JAGL]
22927
23002
+
Thr
CGT
[ENA]
¡û
>W141284659
JALZ01000056
Alphaproteobacteria
Roseivivax halodurans JCM 10272 [JALZ]
5170
5095
-
Thr
CGT
[ENA]
¡û
>WENV183704135
PDWI01000047
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10144
10219
+
Thr
CGT
[ENA]
¢þ
>WENV183708000
PDWI01012185
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
530
605
+
Thr
CGT
[ENA]
¢þ
>WENV183714665
PDWI01196951
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1093
1169
+
Thr
CGT
[ENA]
¢þ
>WENV183719206
PDWJ01010738
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5934
5859
-
Thr
CGT
[ENA]
¢þ
>WENV183719709
PDWJ01018981
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5900
5974
+
Thr
CGT
[ENA]
¢þ
>WENV170016492
AZIK01009775
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
589
664
+
Thr
CGT
[ENA]
¢þ
>WENV170264845
CERD01076287
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
135
210
+
Thr
CGT
[ENA]
¢þ
>WENV170397120
CEUD01027411
[CEUD] marine metagenome genome assembly TARA_137_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
339
264
-
Thr
CGT
[ENA]
¢þ
>WENV170485911
CEVN01149171
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
428
503
+
Thr
CGT
[ENA]
¢þ
>WENV170634507
FYBJ01001567
[FYBJ] marine metagenome; marine
3048
2973
-
Thr
CGT
[ENA]
¢þ
>WENV170656075
JTFN01126207
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
27
102
+
Thr
CGT
[ENA]
¢þ
>WENV170762243
LUMW01002966
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
211
286
+
Thr
CGT
[ENA]
¢þ
>WENV170802823
MDSW01020078
[MDSW] marine metagenome; seawater
5486
5561
+
Thr
CGT
[ENA]
¢þ
>WENV170804455
MDSW01047788
[MDSW] marine metagenome; seawater
61833
61908
+
Thr
CGT
[ENA]
¢þ
>WENV170922822
MDTG01038304
[MDTG] marine metagenome; seawater
12730
12805
+
Thr
CGT
[ENA]
¢þ
>WENV170923991
MDTG01058323
[MDTG] marine metagenome; seawater
56179
56104
-
Thr
CGT
[ENA]
¢þ
>WENV170936698
MDTG01279052
[MDTG] marine metagenome; seawater
5333
5408
+
Thr
CGT
[ENA]
¢þ
>WENV170962005
MRWF01001990
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
4506
4581
+
Thr
CGT
[ENA]
¢þ
>WENV170963327
MRWG01000104
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
4366
4441
+
Thr
CGT
[ENA]
¢þ
>W09112049
ABXL01000047
Alphaproteobacteria
Pseudovibrio sp. JE062 [ABXL]
91806
91881
+
Thr
CGT
[ENA]
¡û
>W09118272
ACCU01000015
Alphaproteobacteria
Roseibium alexandrii DFL-11 [ACCU]
711837
711762
-
Thr
CGT
[ENA]
¡û
>C191087689
CP032312
Alphaproteobacteria
Pannonibacter phragmitetus BB [CP032312]
4691551
4691476
-
Thr
CGT
-
¡û
>C191141133
CP035417
Alphaproteobacteria
Leisingera sp. NJS204 [CP035417]
4147449
4147374
-
Thr
CGT
-
¡û
>C191152296
CP036532
Alphaproteobacteria
Roseitalea porphyridii MA7-20 [CP036532]
348278
348203
-
Thr
CGT
-
¡û
>C191158474
CP038234
Alphaproteobacteria
Leisingera sp. NJS201 [CP038234]
4030370
4030445
+
Thr
CGT
-
¡û
>W1910285084
FREV01000001
Alphaproteobacteria
Loktanella sp. Alg231-35 [FREV]
211879
211954
+
Thr
CGT
[ENA]
¡û
>W1910442655
FWFK01000001
Alphaproteobacteria
Roseivivax jejudonensis CECT 8625 [FWFK]
1036581
1036656
+
Thr
CGT
[ENA]
¡û
>W1910442752
FWFM01000003
Alphaproteobacteria
Marinovum algicola CECT 5396 [FWFM]
71580
71655
+
Thr
CGT
[ENA]
¡û
>W1910442805
FWFN01000005
Alphaproteobacteria
Pseudooceanicola marinus CECT 7751 [FWFN]
425595
425520
-
Thr
CGT
[ENA]
¡û
>W1910443120
FWFU01000002
Alphaproteobacteria
Roseovarius halotolerans CECT 8110 [FWFU]
582415
582340
-
Thr
CGT
[ENA]
¡û
>C141008364
CP006773
Alphaproteobacteria
Leisingera methylohalidivorans DSM 14336 DSM 14336; MB2 [CP006773]
3869883
3869958
+
Thr
CGT
[Ensembl]
¡û
>W1911575819
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
3991276
3991201
-
Thr
CGT
[ENA]
¡û
>W1911638518
PVWS01000001
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
171394
171319
-
Thr
CGT
[ENA]
¡û
>W1911652506
QBBT01000035
Alphaproteobacteria
Pseudooceanicola algae Lw-13e [QBBT]
37706
37781
+
Thr
CGT
[ENA]
¡û
>W1810101722
PGTC01000024
Alphaproteobacteria
Pseudooceanicola marinus LMG 23705 [PGTC]
245098
245023
-
Thr
CGT
[ENA]
¡û
>W1810102056
PGTY01000002
Alphaproteobacteria
Yoonia maricola DSM 29128 [PGTY]
41677
41602
-
Thr
CGT
[ENA]
¡û
>W1810364803
PVTN01000012
Alphaproteobacteria
Marivita geojedonensis DSM 29432 [PVTN]
704
629
-
Thr
CGT
[ENA]
¡û
>W1810365094
PVTT01000002
Alphaproteobacteria
Hasllibacter halocynthiae DSM 29318 [PVTT]
653750
653825
+
Thr
CGT
[ENA]
¡û
>W1810503962
QBKN01000017
Alphaproteobacteria
Allosediminivita pacifica DSM 29329 [QBKN]
53633
53558
-
Thr
CGT
[ENA]
¡û
>W1810584529
QFBB01000004
Alphaproteobacteria
Thioclava sp. NG1 [QFBB]
361904
361979
+
Thr
CGT
[ENA]
¡û
>W1810658814
QJJO01000017
Alphaproteobacteria
Ruegeria sp. P4 [QJJO]
28595
28520
-
Thr
CGT
[ENA]
¡û
>W1810685581
QKZJ01000009
Alphaproteobacteria
Celeribacter halophilus DSM 26270 [QKZJ]
53713
53788
+
Thr
CGT
[ENA]
¡û
>W1810707309
QNGB01000001
Alphaproteobacteria
Roseovarius sp. TE539 [QNGB]
191282
191207
-
Thr
CGT
[ENA]
¡û
>C151073529
CP010855
Alphaproteobacteria
Marinovum algicola DG 898 [CP010855]
32774
32699
-
Thr
CGT
[Ensembl]
¡û
>W1511482885
JWLI01000012
Alphaproteobacteria
Leisingera sp. ANG-M7 [JWLI]
172795
172870
+
Thr
CGT
[ENA]
¡û
>C121006684
CP003147
Alphaproteobacteria
Pseudovibrio sp. FO-BEG1 [CP003147]
5268699
5268624
-
Thr
CGT
[Ensembl]
¡û
>W1610093075
CYSR01000037
Alphaproteobacteria
Leisingera aquaemixtae [CYSR]
178
253
+
Thr
CGT
[ENA]
¡û
>W1610661088
LJSU01000004
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
64827
64902
+
Thr
CGT
[ENA]
¡û
>W1610895903
LRUD01000018
Alphaproteobacteria
Celeribacter halophilus [LRUD]
53875
53950
+
Thr
CGT
[ENA]
¡û
>W1610935550
LUKH01000004
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
165903
165978
+
Thr
CGT
[ENA]
¡û
>W1611013546
LXYQ01000128
Alphaproteobacteria
Roseovarius indicus [LXYQ]
4238
4313
+
Thr
CGT
[ENA]
¡û
>W1611021236
LYUZ01000092
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
161053
161128
+
Thr
CGT
[ENA]
¡û
>W1710096283
CYSR01000037
Alphaproteobacteria
Leisingera aquaemixtae [CYSR]
178
253
+
Thr
CGT
[ENA]
¡û
>W1710524235
FNIO01000003
Alphaproteobacteria
Lutimaribacter pacificus [FNIO]
692
767
+
Thr
CGT
[ENA]
¡û
>W1710528163
FNMZ01000002
Alphaproteobacteria
Albimonas donghaensis [FNMZ]
268493
268418
-
Thr
CGT
[ENA]
¡û
>W1710530925
FNPF01000001
Alphaproteobacteria
Citreimonas salinaria [FNPF]
293458
293383
-
Thr
CGT
[ENA]
¡û
>W1710542177
FNYY01000006
Alphaproteobacteria
Marinovum algicola [FNYY]
168017
167942
-
Thr
CGT
[ENA]
¡û
>W1710543072
FNZQ01000001
Alphaproteobacteria
Jannaschia helgolandensis [FNZQ]
875957
876032
+
Thr
CGT
[ENA]
¡û
>W1710543834
FOAI01000010
Alphaproteobacteria
Roseivivax marinus [FOAI]
2801
2726
-
Thr
CGT
[ENA]
¡û
>W1710558236
FOLR01000004
Alphaproteobacteria
Salipiger profundus nanhaiensis [FOLR]
141618
141543
-
Thr
CGT
[ENA]
¡û
>W1710559528
FOMS01000002
Alphaproteobacteria
Roseivivax sediminis [FOMS]
240912
240837
-
Thr
CGT
[ENA]
¡û
>W1710565568
FORH01000004
Alphaproteobacteria
Celeribacter neptunius [FORH]
228959
228884
-
Thr
CGT
[ENA]
¡û
>W1710566414
FORY01000009
Alphaproteobacteria
Celeribacter halophilus [FORY]
53706
53781
+
Thr
CGT
[ENA]
¡û
>W1710568461
FOTQ01000001
Alphaproteobacteria
Shimia aestuarii [FOTQ]
1405438
1405513
+
Thr
CGT
[ENA]
¡û
>W1710573859
FOXV01000001
Alphaproteobacteria
Roseivivax halotolerans [FOXV]
423190
423265
+
Thr
CGT
[ENA]
¡û
>W1710577531
FPAW01000034
Alphaproteobacteria
Sedimentitalea nanhaiensis [FPAW]
794
719
-
Thr
CGT
[ENA]
¡û
>W1710589236
FQZZ01000002
Alphaproteobacteria
Lutimaribacter pacificus [FQZZ]
462
537
+
Thr
CGT
[ENA]
¡û
>W1710599531
FTOU01000004
Alphaproteobacteria
Paracoccus saliphilus [FTOU]
34317
34242
-
Thr
CGT
[ENA]
¡û
>W1710616694
JFKC01000012
Alphaproteobacteria
Marivita geojedonensis [JFKC]
298
223
-
Thr
CGT
[ENA]
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Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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