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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23914 (79 seq.)
>W1711386310
MEFE01000025
Bacteroidota
Sphingobacteriales bacterium SCN 48-20 [MEFE]
3559
3470
-
Ser
GCT
[ENA]
¡û
>W1711421902
MIAG01000009
Bacteroidota
Sphingobacteriia bacterium RIFOXYC2_FULL_35_18 [MIAG]
370345
370434
+
Ser
GCT
[ENA]
¡û
>W1711421927
MIAH01000022
Bacteroidota
Sphingobacteriia bacterium RIFOXYD2_FULL_35_12 [MIAH]
112317
112406
+
Ser
GCT
[ENA]
¡û
>W1711503899
MKUA01000026
Bacteroidota
Sphingobacteriales bacterium 48-107 [MKUA]
285099
285010
-
Ser
GCT
[ENA]
¡û
>W1711715354
MTFE01000010
Bacteroidota
Cnuella takakiae [MTFE]
1698848
1698937
+
Ser
GCT
[ENA]
¡û
>W131169990
ARFF01000001
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
77261
77352
+
Ser
GCT
[ENA]
¡û
>W131225595
AUDS01000001
Bacteroidota
Terrimonas ferruginea DSM 30193 [AUDS]
69285
69196
-
Ser
GCT
[ENA]
¡û
>WENV180099684
NMRC01022623
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
687
776
+
Ser
GCT
[ENA]
¡û
>WENV180693342
OCZS011170135
[OCZS] soil metagenome; soil
112
201
+
Ser
GCT
[ENA]
¡û
>WENV181163973
OEIQ01385101
[OEIQ] soil metagenome; soil
35
124
+
Ser
GCT
[ENA]
¡û
>WENV181192275
OEPS010530671
[OEPS] soil metagenome; soil
22
111
+
Ser
GCT
[ENA]
¡û
>WENV181226824
OFDN01000116
[OFDN] hot springs metagenome; Water
1771
1860
+
Ser
GCT
[ENA]
¡û
>WENV181369636
OFQP01014999
[OFQP] freshwater metagenome; Freshwater Lake
330
241
-
Ser
GCT
[ENA]
¡û
>WENV181370803
OFQT01012531
[OFQT] freshwater metagenome; Freshwater Lake
244
155
-
Ser
GCT
[ENA]
¡û
>WENV181402592
OFTY01006610
[OFTY] sludge metagenome; sludge
1006
1095
+
Ser
GCT
[ENA]
¡û
>W141167886
AXUM01000008
Bacteroidota
Sediminibacterium sp. C3 [AXUM]
323212
323301
+
Ser
GCT
[ENA]
¡û
>W141171278
AXZP01000076
Bacteroidota
Sediminibacterium salmoneum NBRC 103935 [AXZP]
48881
48792
-
Ser
GCT
[ENA]
¡û
>WENV181836456
OGVJ01007874
[OGVJ] freshwater metagenome; freshwater
1205
1294
+
Ser
GCT
[ENA]
¡û
>WENV181839333
OGVO01000745
[OGVO] freshwater metagenome; freshwater
5298
5209
-
Ser
GCT
[ENA]
¡û
>WENV183728932
PJTQ01001150
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
8997
8906
-
Ser
GCT
[ENA]
¡û
>WENV183729448
PJTQ01041028
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
501
592
+
Ser
GCT
[ENA]
¡û
>WENV183729559
PJTQ01068570
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
304
395
+
Ser
GCT
[ENA]
¡û
>WENV183730287
PJTR01015137
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
346
435
+
Ser
GCT
[ENA]
¡û
>WENV183731450
PJTT01000003
[PJTT] soil metagenome; Soil (2) enriched on wood chips
641160
641251
+
Ser
GCT
[ENA]
¡û
>WENV183741024
PJUF01028901
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
583
494
-
Ser
GCT
[ENA]
¡û
>WENV183743560
PJUJ01006261
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1264
1353
+
Ser
GCT
[ENA]
¡û
>WENV183744778
PJUL01000219
[PJUL] feces metagenome; Chicken feces enriched on filter paper
9615
9704
+
Ser
GCT
[ENA]
¡û
>WENV170010925
APMI01035149
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1775
1866
+
Ser
GCT
[ENA]
¡û
>WENV170012127
APMI01122806
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2219
2128
-
Ser
GCT
[ENA]
¡û
>WENV170980827
MWVT01002299
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
927
1016
+
Ser
GCT
[ENA]
¡û
>WENV170980866
MWVT01004553
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
2508
2597
+
Ser
GCT
[ENA]
¡û
>WENV170980876
MWVT01005108
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
716
627
-
Ser
GCT
[ENA]
¡û
>WENV170984064
MWVV01159323
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
269
358
+
Ser
GCT
[ENA]
¡û
>WENV170984819
MWVW01000351
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
9155
9066
-
Ser
GCT
[ENA]
¡û
>WENV170984918
MWVW01003490
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
2122
2033
-
Ser
GCT
[ENA]
¡û
>WENV170984931
MWVW01003946
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
2015
1924
-
Ser
GCT
[ENA]
¡û
>WENV170985400
MWVW01090035
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
237
326
+
Ser
GCT
[ENA]
¡û
>WENV170985824
MWVX01003774
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
2766
2677
-
Ser
GCT
[ENA]
¡û
>WENV170986016
MWVX01011499
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1305
1216
-
Ser
GCT
[ENA]
¡û
>WENV170987465
MWVX01194923
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
193
284
+
Ser
GCT
[ENA]
¡û
>WENV170987476
MWVX01200076
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
177
88
-
Ser
GCT
[ENA]
¡û
>WENV170989005
MWVY01055043
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
300
211
-
Ser
GCT
[ENA]
¡û
>WENV170990239
MWWA01000045
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
15097
15188
+
Ser
GCT
[ENA]
¡û
>WENV170991113
MWWA01114985
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
284
373
+
Ser
GCT
[ENA]
¡û
>WENV170992105
MWWB01001480
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
1515
1604
+
Ser
GCT
[ENA]
¡û
>WENV170992585
MWWB01051009
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
244
155
-
Ser
GCT
[ENA]
¡û
>WENV170992755
MWWB01083177
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
197
106
-
Ser
GCT
[ENA]
¡û
>WENV170994757
MWWE01043682
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
48
137
+
Ser
GCT
[ENA]
¡û
>WENV170994815
MWWE01061038
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
152
241
+
Ser
GCT
[ENA]
¡û
>WENV170996870
MWWG01000947
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
2174
2263
+
Ser
GCT
[ENA]
¡û
>WENV170996891
MWWG01002994
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
1006
1097
+
Ser
GCT
[ENA]
¡û
>WENV170997620
MWWG01212818
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
23
112
+
Ser
GCT
[ENA]
¡û
>WENV170999180
MWWK01002402
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
2244
2333
+
Ser
GCT
[ENA]
¡û
>WENV170999300
MWWK01019986
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
483
572
+
Ser
GCT
[ENA]
¡û
>C191090805
CP032489
Bacteroidota
Arachidicoccus soli KIS59-12 [CP032489]
1705798
1705709
-
Ser
GCT
-
¡û
>C191153649
CP037755
Bacteroidota
Pseudocnuella soli 17J28-1 [CP037755]
1797428
1797517
+
Ser
GCT
-
¡û
>W1810692627
QLKR01000001
Bacteroidota
Niabella yanshanensis HAMBI_3031 [QLKR]
295625
295534
-
Ser
GCT
[ENA]
¡û
>W1810745625
QOWJ01000017
Bacteroidota
Paracnuella aquatica N24 [QOWJ]
35014
35103
+
Ser
GCT
[ENA]
¡û
>W1810858498
QTJU01000011
Bacteroidota
Deminuibacter soli K23C18032701 [QTJU]
117616
117527
-
Ser
GCT
[ENA]
¡û
>C151016362
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
1976
2067
+
Ser
GCT
[Ensembl]
¡û
>W2010447453
JAACJR010000009
Bacteroidota
Sediminibacterium sp. WSJ-3 [JAACJR]
92003
91914
-
Ser
GCT
[ENA]
¡û
>W2011616168
SJZI01000042
Bacteroidota
Flaviaesturariibacter sp. 17J68-12 [SJZI]
834092
834181
+
Ser
GCT
[ENA]
¡û
>W2011617370
SKFH01000031
Bacteroidota
Flaviaesturariibacter sp. 17J68-15 [SKFH]
11469
11380
-
Ser
GCT
[ENA]
¡û
>W2011648071
SNWP01000011
Bacteroidota
Sediminibacterium goheungense DSM 28323 [SNWP]
1060778
1060867
+
Ser
GCT
[ENA]
¡û
>W2012157155
VVIP01000043
Bacteroidota
Chitinophagaceae bacterium YG09 [VVIP]
177197
177286
+
Ser
GCT
[ENA]
¡û
>W2012329668
WHPF01000008
Bacteroidota
Panacibacter sp. KCS-6 [WHPF]
148913
148824
-
Ser
GCT
[ENA]
¡û
>W2110692680
JAIQDI010000002
Bacteroidota
Niabella sp. 3A5MI-3 [JAIQDI]
380923
381012
+
Ser
GCT
[ENA]
¡û
>C211367321
CP079215
Bacteroidota
Niabella sp. I65 [CP079215]
4119068
4119159
+
Ser
GCT
-
¡û
>C211401668
CP083387
Bacteroidota
Arachidicoccus sp. 5GH13-10 [CP083387]
4315795
4315706
-
Ser
GCT
-
¡û
>C241065997
CP042433
Bacteroidota
Flavisolibacter ginsenosidimutans Gsoil 636 [CP042433]
1930707
1930618
-
Ser
GCT
-
¡û
>C241066031
CP042434
Bacteroidota
Arachidicoccus ginsenosidivorans Gsoil 809 [CP042434]
4548194
4548105
-
Ser
GCT
-
¡û
>C241066054
CP042435
Bacteroidota
Panacibacter ginsenosidivorans Gsoil1550 [CP042435]
1390047
1390136
+
Ser
GCT
-
¡û
>C241352477
CP139960
Bacteroidota
Niabella yanshanensis HAMBI_3031 [CP139960]
1449599
1449508
-
Ser
GCT
-
¡û
>C161090526
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
782118
782209
+
Ser
GCT
[Ensembl]
¡û
>W121017743
AGSA01000025
Bacteroidota
Niabella soli DSM 19437 [AGSA]
182907
182816
-
Ser
GCT
[ENA]
¡û
>W1710512660
FMZO01000002
Bacteroidota
Niabella drilacis [FMZO]
223073
223164
+
Ser
GCT
[ENA]
¡û
>W1710533201
FNQY01000019
Bacteroidota
Arachidicoccus rhizosphaerae [FNQY]
82326
82415
+
Ser
GCT
[ENA]
¡û
>W1710583154
FQUO01000009
Bacteroidota
Cnuella takakiae [FQUO]
26942
27031
+
Ser
GCT
[ENA]
¡û
>W1710600262
FUWH01000007
Bacteroidota
Sediminibacterium ginsengisoli [FUWH]
197962
197871
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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