This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239179 (38 seq.)
>W1711934428
NAJR01000007
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
94545
94620
+
Arg
CCT
[ENA]
¡û
>W1712080454
NGZL01000025
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
56311
56386
+
Arg
CCT
[ENA]
¡û
>WENV013055
AACY020357432
Marine microbial communities from Global Ocean Sampling (GOS)
89303
89380
+
Arg
CCT
[ENA]
>WENV013239
AACY020363768
Marine microbial communities from Global Ocean Sampling (GOS)
23148
23071
-
Arg
CCT
[ENA]
>C022296
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1528089
1528014
-
Arg
CCT
[Ensembl]
¡û
>C022397
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1460103
1460028
-
Arg
CCT
[Ensembl]
¡û
>C022500
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1536698
1536623
-
Arg
CCT
[Ensembl]
¡û
>C022601
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1586913
1586838
-
Arg
CCT
[Ensembl]
¡û
>C022954
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3395143
3395218
+
Arg
CCT
[Ensembl]
¡û
>C023262
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3025150
3025225
+
Arg
CCT
[Ensembl]
¡û
>w022853
AAWY01000010
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
12833
12756
-
Arg
CCT
[ENA]
¡û
>WENV180310821
OBJT01029064
[OBJT] soil metagenome; soil
171
96
-
Arg
CCT
[ENA]
¢þ
>W141171222
AXZL01000066
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
34294
34219
-
Arg
CCT
[ENA]
¡û
>W141227898
BALN01000015
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
38297
38222
-
Arg
CCT
[ENA]
¡û
>W141277719
JAEU01000013
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
154219
154294
+
Arg
CCT
[ENA]
¡û
>C181057609
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
21648
21573
-
Arg
CCT
-
¡û
>C181062969
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3289579
3289654
+
Arg
CCT
-
¡û
>C181075077
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3469505
3469430
-
Arg
CCT
-
¡û
>C181165441
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
4022869
4022794
-
Arg
CCT
-
¡û
>W141520095
JGVI01000071
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
18392
18467
+
Arg
CCT
[ENA]
¡û
>C191205279
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3685311
3685236
-
Arg
CCT
-
¡û
>W09103910
AALB01000009
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
99045
99120
+
Arg
CCT
[ENA]
¡û
>W09104044
AALH01000020
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
55590
55665
+
Arg
CCT
[ENA]
¡û
>W09104298
AALN01000031
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
3741
3666
-
Arg
CCT
[ENA]
¡û
>W09104571
AALX01000003
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
58478
58403
-
Arg
CCT
[ENA]
¡û
>W1910913775
NHRI01000006
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
68320
68245
-
Arg
CCT
[ENA]
¡û
>W1810073344
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
17895
17970
+
Arg
CCT
[ENA]
¡û
>W1810587713
QFLG01000003
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
113277
113202
-
Arg
CCT
[ENA]
¡û
>W1810721547
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
349394
349319
-
Arg
CCT
[ENA]
¡û
>W1511403518
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
232790
232865
+
Arg
CCT
[ENA]
¡û
>C11121536
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3129187
3129262
+
Arg
CCT
[Ensembl]
¡û
>W121103297
AKZL01000001
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
75687
75762
+
Arg
CCT
[ENA]
¡û
>W1610072106
BCUO01000022
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
38297
38222
-
Arg
CCT
[ENA]
¡û
>W1610617839
LGYY01000109
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
13565
13490
-
Arg
CCT
[ENA]
¡û
>W1710069308
BCUO01000022
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
38297
38222
-
Arg
CCT
[ENA]
¡û
>W1710692506
JZWJ01000173
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
57469
57544
+
Arg
CCT
[ENA]
¡û
>W1710706605
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
143780
143855
+
Arg
CCT
[ENA]
¡û
>W1710744014
LGYY01000109
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
13565
13490
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK