This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239183 (108 seq.)
>W1710862352
LMEI01000001
Actinomycetota
Streptomyces sp. Root431 [LMEI]
650311
650384
+
His
GTG
[ENA]
¡û
>W1711210341
LXIC01000009
Actinomycetota
Streptomyces sp. RTd22 [LXIC]
77229
77156
-
His
GTG
[ENA]
¡û
>W1711317360
MAXF01000031
Actinomycetota
Streptomyces sparsogenes [MAXF]
18315
18388
+
His
GTG
[ENA]
¡û
>W1711360946
MDKB01000003
Actinomycetota
Streptomyces griseus [MDKB]
1004251
1004324
+
His
GTG
[ENA]
¡û
>W1711739036
MUBN01000512
Actinomycetota
Streptomyces antimycoticus castelarensis [MUBN]
12181
12108
-
His
GTG
[ENA]
¡û
>W1711926203
NACZ01000352
Actinomycetota
Streptomyces sp. BF-3 [NACZ]
3592
3519
-
His
GTG
[ENA]
¡û
>W131168235
ARDX01000003
Actinomycetota
Streptomyces sp. KhCrAH-340 [ARDX]
241068
240995
-
His
GTG
[ENA]
¡û
>W131168818
AREH01000010
Actinomycetota
Streptomyces sp. ATexAB-D23 [AREH]
26178
26251
+
His
GTG
[ENA]
¡û
>W131220745
ATZT01000066
Actinomycetota
actinobacterium SCGC AAA028-N15 [ATZT]
9085
9160
+
His
GTG
[ENA]
¡û
>C171037956
CP015362
Actinomycetota
Streptomyces sp. S8 [CP015362]
5055245
5055172
-
His
GTG
-
¡û
>W131167917
ARDQ01000018
Actinomycetota
Streptomyces sp. CcalMP-8W [ARDQ]
56148
56075
-
His
GTG
[ENA]
¡û
>W131181732
ARPI01000010
Actinomycetota
Streptomyces sp. DvalAA-83 [ARPI]
28778
28851
+
His
GTG
[ENA]
¡û
>W131033984
AJFD01000060
Actinomycetota
Streptomyces viridosporus T7A [AJFD]
200942
200869
-
His
GTG
[ENA]
¡û
>W141066432
ARPF01000009
Actinomycetota
Streptomyces sp. SolWspMP-sol2th [ARPF]
244164
244091
-
His
GTG
[ENA]
¡û
>WENV180727309
ODGU01004112
[ODGU] human metagenome; G_DNA_Supragingival plaque
2786
2711
-
His
GTG
[ENA]
¢þ
>WENV180734385
ODGZ01007569
[ODGZ] human metagenome; G_DNA_Supragingival plaque
74
1
-
His
GTG
[ENA]
¢þ
>WENV180735569
ODHB01000036
[ODHB] human metagenome; G_DNA_Supragingival plaque
4628
4553
-
His
GTG
[ENA]
¢þ
>WENV180749944
ODHS01000149
[ODHS] human metagenome; G_DNA_Supragingival plaque
49453
49378
-
His
GTG
[ENA]
¢þ
>WENV180754924
ODHU01003781
[ODHU] human metagenome; G_DNA_Supragingival plaque
2835
2760
-
His
GTG
[ENA]
¢þ
>WENV180846148
ODKT01006030
[ODKT] human metagenome; G_DNA_Supragingival plaque
2246
2171
-
His
GTG
[ENA]
¢þ
>WENV180927796
ODTM01004051
[ODTM] human metagenome; G_DNA_Supragingival plaque
3115
3190
+
His
GTG
[ENA]
¢þ
>WENV180934385
ODTS01000006
[ODTS] human metagenome; G_DNA_Subgingival plaque
24433
24508
+
His
GTG
[ENA]
¢þ
>WENV180938401
ODTX01001819
[ODTX] human metagenome; G_DNA_Supragingival plaque
8719
8794
+
His
GTG
[ENA]
¢þ
>WENV180958131
ODUL01000541
[ODUL] human metagenome; G_DNA_Supragingival plaque
5350
5425
+
His
GTG
[ENA]
¢þ
>WENV180963841
ODUO01000005
[ODUO] human metagenome; G_DNA_Supragingival plaque
64827
64752
-
His
GTG
[ENA]
¢þ
>WENV180992568
ODVP01038943
[ODVP] human metagenome; G_DNA_Buccal mucosa
138
63
-
His
GTG
[ENA]
¢þ
>WENV181078685
OEAS01000316
[OEAS] human metagenome; G_DNA_Supragingival plaque
18970
19045
+
His
GTG
[ENA]
¢þ
>WENV181078717
OEAS01000379
[OEAS] human metagenome; G_DNA_Supragingival plaque
26380
26307
-
His
GTG
[ENA]
¢þ
>WENV181107791
OEEI01022728
[OEEI] human metagenome; G_DNA_Supragingival plaque
1166
1091
-
His
GTG
[ENA]
¢þ
>WENV181121713
OEFL01015676
[OEFL] human metagenome; G_DNA_Supragingival plaque
1340
1415
+
His
GTG
[ENA]
¢þ
>WENV181146048
OEHQ01000626
[OEHQ] human metagenome; G_DNA_Supragingival plaque
13235
13310
+
His
GTG
[ENA]
¢þ
>WENV181159081
OEIH01043167
[OEIH] human metagenome; G_DNA_Supragingival plaque
483
408
-
His
GTG
[ENA]
¢þ
>WENV181177198
OEJS01000124
[OEJS] human metagenome; G_DNA_Supragingival plaque
9104
9179
+
His
GTG
[ENA]
¢þ
>WENV181377202
OFRA01003985
[OFRA] wastewater metagenome; Lake Maggiore Verbania
307
382
+
His
GTG
[ENA]
¢þ
>WENV181400921
OFSF01032886
[OFSF] wastewater metagenome; Exp Tend VB 100WW
822
897
+
His
GTG
[ENA]
¢þ
>W141216849
AZVE01000016
Actinomycetota
Streptomyces griseolus DpondAA-B6 [AZVE]
93194
93267
+
His
GTG
[ENA]
¡û
>W141216878
AZVF01000002
Actinomycetota
Streptomyces sp. KhCrAH-337 [AZVF]
1016988
1017061
+
His
GTG
[ENA]
¡û
>W141216946
AZVG01000003
Actinomycetota
Streptomyces sp. KhCrAH-40 [AZVG]
241186
241113
-
His
GTG
[ENA]
¡û
>W141252312
CBRG010000520
Actinomycetota
Streptomyces sp. AW19M42 [CBRG]
3497
3424
-
His
GTG
[ENA]
¡û
>W141274460
JABQ01000021
Actinomycetota
Streptomyces sp. PRh5 [JABQ]
57253
57326
+
His
GTG
[ENA]
¡û
>C181130270
CP026304
Actinomycetota
Streptomyces lunaelactis MM109 [CP026304]
3194814
3194887
+
His
GTG
-
¡û
>C181148870
CP027306
Actinomycetota
Streptomyces atratus SCSIO_ZH16 [CP027306]
3355119
3355192
+
His
GTG
-
¡û
>C181177036
CP029342
Actinomycetota
Streptomyces sp. SM18 [CP029342]
2489651
2489724
+
His
GTG
-
¡û
>W141621990
JJOB01000001
Actinomycetota
Streptomyces sp. NTK 937 [JJOB]
2101394
2101467
+
His
GTG
[ENA]
¡û
>W09120870
ACEX01000506
Actinomycetota
Streptomyces himastatinicus ATCC 53653 [ACEX]
34102
34029
-
His
GTG
[ENA]
¡û
>W141734678
JNLT01000008
Actinomycetota
Streptomyces sp. CNS654 [JNLT]
141442
141515
+
His
GTG
[ENA]
¡û
>W141759751
JNZO01000034
Actinomycetota
Streptomyces flavochromogenes [JNZO]
26876
26949
+
His
GTG
[ENA]
¡û
>W141761827
JOAZ01000009
Actinomycetota
Streptomyces halstedii [JOAZ]
142446
142519
+
His
GTG
[ENA]
¡û
>W141768222
JOFC01000006
Actinomycetota
Streptomyces griseolus [JOFC]
142443
142516
+
His
GTG
[ENA]
¡û
>W141769879
JOGC01000654
Actinomycetota
Streptomyces sp. NRRL S-525 [JOGC]
1042
1115
+
His
GTG
[ENA]
¡û
>W141771164
JOGZ01000005
Actinomycetota
Streptomyces sp. NRRL S-1824 [JOGZ]
59279
59352
+
His
GTG
[ENA]
¡û
>W141775244
JOJO01000009
Actinomycetota
Streptomyces sp. NRRL B-24720 [JOJO]
254228
254155
-
His
GTG
[ENA]
¡û
>W141816332
JQJU01000020
Actinomycetota
Streptomyces atratus [JQJU]
102900
102973
+
His
GTG
[ENA]
¡û
>W1910001519
AQRK01000090
Actinomycetota
Streptomyces sp. AmelKG-D3 [AQRK]
87959
88032
+
His
GTG
[ENA]
¡û
>W1910182030
BJMN01000048
Actinomycetota
Streptomyces gardneri NBRC 12865 [BJMN]
47085
47158
+
His
GTG
[ENA]
¡û
>W1910596052
LACQ01000001
Actinomycetota
Streptomyces sp. OspMP-M45 [LACQ]
80676
80603
-
His
GTG
[ENA]
¡û
>W1910618687
LJIW01000001
Actinomycetota
Streptomyces malaysiensis F913 [LJIW]
4612333
4612407
+
His
GTG
[ENA]
¡û
>W1910890260
NEUG01000221
Actinomycetota
Streptomyces sp. SM5 [NEUG]
15604
15531
-
His
GTG
[ENA]
¡û
>W1910916459
NHZO01000151
Actinomycetota
Streptomyces cinnamoneus ATCC 21532 [NHZO]
187348
187275
-
His
GTG
[ENA]
¡û
>W1911083672
NNBN01000010
Actinomycetota
Streptomyces sp. CB02613 [NNBN]
41158
41085
-
His
GTG
[ENA]
¡û
>W1911615606
PPCV01000006
Actinomycetota
Propioniciclava flava VG341 [PPCV]
45753
45828
+
His
GTG
[ENA]
¡û
>W1810355234
PVLV01000265
Actinomycetota
Streptomyces solincola ST5x [PVLV]
9801
9874
+
His
GTG
[ENA]
¡û
>W1810499981
QBHZ01000009
Actinomycetota
Streptomyces sp. CS131 [QBHZ]
698264
698337
+
His
GTG
[ENA]
¡û
>W1810604802
QGMS01001355
Actinomycetota
Streptomyces sp. ZEA17I [QGMS]
2533
2606
+
His
GTG
[ENA]
¡û
>W1810682602
QKUG01000011
Actinomycetota
Streptomyces sp. ScaeMP-e122 [QKUG]
245698
245625
-
His
GTG
[ENA]
¡û
>W1810685880
QKZP01000011
Actinomycetota
Streptomyces sp. DvalAA-21 [QKZP]
28694
28767
+
His
GTG
[ENA]
¡û
>W1810693963
QLLS01000011
Actinomycetota
Streptomyces sp. DpondAA-E10 [QLLS]
28647
28720
+
His
GTG
[ENA]
¡û
>W1810694092
QLLU01000012
Actinomycetota
Streptomyces sp. DpondAA-A50 [QLLU]
28611
28684
+
His
GTG
[ENA]
¡û
>W10112619
ADFD01000014
Actinomycetota
Streptomyces sp. SirexAA-E [ADFD]
28341
28414
+
His
GTG
[ENA]
¡û
>W10126620
AEDI01000004
Actinomycetota
Streptomyces violaceusniger Tu 4113 [AEDI]
205668
205741
+
His
GTG
[ENA]
¡û
>W11115840
ADFD01000014
Actinomycetota
Streptomyces sp. SirexAA-E [ADFD]
28341
28414
+
His
GTG
[ENA]
¡û
>W1511401260
JTHL01000001
Actinomycetota
Streptomyces sp. 150FB [JTHL]
2921247
2921320
+
His
GTG
[ENA]
¡û
>C11122166
CP002993
Actinomycetota
Streptomyces sp. SirexAA-E [CP002993]
2551643
2551716
+
His
GTG
[Ensembl]
¡û
>C11122242
CP002994
Actinomycetota
Streptomyces violaceusniger Tu 4113 [CP002994]
9361559
9361632
+
His
GTG
[Ensembl]
¡û
>W11133881
AEDI01000004
Actinomycetota
Streptomyces violaceusniger Tu 4113 [AEDI]
205668
205741
+
His
GTG
[ENA]
¡û
>W1511695131
LGCP01000235
Actinomycetota
Streptomyces sp. NRRL WC-3701 [LGCP]
24067
24142
+
His
GTG
[ENA]
¡û
>W1511697786
LGEE01000014
Actinomycetota
Streptomyces sp. NRRL F-6491 [LGEE]
27979
27906
-
His
GTG
[ENA]
¡û
>W1511697922
LGEG01000138
Actinomycetota
Streptomyces sp. NRRL F-6492 [LGEG]
58784
58857
+
His
GTG
[ENA]
¡û
>W1511707310
LGUY01000194
Actinomycetota
Kitasatospora aureofaciens NRRL B-2658 [LGUY]
24956
25031
+
His
GTG
[ENA]
¡û
>WENV048881
AACY022757222
Marine microbial communities from Global Ocean Sampling (GOS)
392
469
+
His
GTG
[ENA]
>C161051643
CP013129
Actinomycetota
Streptomyces venezuelae ATCC 15439 [CP013129]
3331044
3331117
+
His
GTG
-
¡û
>C161090224
CP015726
Actinomycetota
Streptomyces sp. RTd22 [CP015726]
4366200
4366273
+
His
GTG
-
¡û
>C161107222
LN881739
Actinomycetota
Streptomyces venezuelae ATCC 15439 [LN881739]
5732380
5732307
-
His
GTG
-
¡û
>WENV061917
AACY023443958
Marine microbial communities from Global Ocean Sampling (GOS)
1372
1295
-
His
GTG
[ENA]
>W1610507518
FLTP01000001
Actinomycetota
Streptomyces sp. OspMP-M45 [FLTP]
80676
80603
-
His
GTG
[ENA]
¡û
>W1610632184
LIPQ01000460
Actinomycetota
Streptomyces aureus [LIPQ]
2906
2833
-
His
GTG
[ENA]
¡û
>W1610724698
LMEI01000001
Actinomycetota
Streptomyces sp. Root431 [LMEI]
650311
650384
+
His
GTG
[ENA]
¡û
>W1610998067
LXIC01000009
Actinomycetota
Streptomyces sp. RTd22 [LXIC]
77229
77156
-
His
GTG
[ENA]
¡û
>W1710082633
BDHJ01000009
Actinomycetota
Streptomyces sp. NBRC 110465 [BDHJ]
282024
281951
-
His
GTG
[ENA]
¡û
>W1710499736
FLTP01000001
Actinomycetota
Streptomyces sp. OspMP-M45 [FLTP]
80676
80603
-
His
GTG
[ENA]
¡û
>W1710501669
FMBY01000090
Actinomycetota
Streptomyces sp. PpalLS-921 [FMBY]
45845
45918
+
His
GTG
[ENA]
¡û
>W1710501725
FMBZ01000088
Actinomycetota
Streptomyces sp. DpondAA-F4a [FMBZ]
5206
5133
-
His
GTG
[ENA]
¡û
>W1710501836
FMCB01000034
Actinomycetota
Streptomyces sp. BpilaLS-43 [FMCB]
14662
14735
+
His
GTG
[ENA]
¡û
>W1710502594
FMCO01000100
Actinomycetota
Streptomyces sp. Termitarium-T10T-6 [FMCO]
11439
11366
-
His
GTG
[ENA]
¡û
>W1710503289
FMDG01000156
Actinomycetota
Streptomyces sp. Cmuel-A718b [FMDG]
24513
24440
-
His
GTG
[ENA]
¡û
>W1710503472
FMDK01000464
Actinomycetota
Streptomyces sp. MnatMP-M17 [FMDK]
2874
2947
+
His
GTG
[ENA]
¡û
>W1710504059
FMHO01000014
Actinomycetota
Streptomyces sp. AmelKG-D3 Streptomyces [FMHO]
87959
88032
+
His
GTG
[ENA]
¡û
>W1710504672
FMIG01000045
Actinomycetota
Streptomyces sp. DpondAA-F4 [FMIG]
125095
125022
-
His
GTG
[ENA]
¡û
>W1710510801
FMYF01000006
Actinomycetota
Raineyella antarctica [FMYF]
111370
111445
+
His
GTG
[ENA]
¡û
>W1710511442
FMYR01000009
Actinomycetota
Streptomyces sp. AmelKG-A3 [FMYR]
243263
243190
-
His
GTG
[ENA]
¡û
>W1710536046
FNSY01000001
Actinomycetota
Streptomyces sp. 2131.1 [FNSY]
4637031
4636958
-
His
GTG
[ENA]
¡û
>W1710576699
FPAE01000009
Actinomycetota
Streptomyces sp. ok210 [FPAE]
252657
252584
-
His
GTG
[ENA]
¡û
>W1710580751
FPJO01000038
Actinomycetota
Streptomyces atratus [FPJO]
9984
10057
+
His
GTG
[ENA]
¡û
>W1710766570
LIPQ01000460
Actinomycetota
Streptomyces aureus [LIPQ]
2906
2833
-
His
GTG
[ENA]
¡û
>W1710772848
LIVO01000016
Actinomycetota
Streptomyces sp. CB02488 [LIVO]
280842
280769
-
His
GTG
[ENA]
¡û
>W1710773092
LIVT01000002
Actinomycetota
Streptomyces sp. CB02366 [LIVT]
477246
477319
+
His
GTG
[ENA]
¡û
>W1710773240
LIVV01000007
Actinomycetota
Streptomyces sp. CB02009 [LIVV]
208460
208387
-
His
GTG
[ENA]
¡û
>W1710774782
LIYH01000001
Actinomycetota
Streptomyces sp. CB03234 [LIYH]
259215
259142
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK