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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239192 (21 seq.)
>W131003048
AHAB01000005
Spirochaetota
Treponema denticola SP23 [AHAB]
45307
45383
+
Arg
TCT
[ENA]
¡û
>W141005591
AGDW01000014
Spirochaetota
Treponema denticola H1-T [AGDW]
153837
153761
-
Arg
TCT
[ENA]
¡û
>W141005726
AGDZ01000027
Spirochaetota
Treponema denticola SP33 [AGDZ]
113778
113702
-
Arg
TCT
[ENA]
¡û
>W141055999
AOTO01000627
Spirochaetota
Treponema pedis isoM1111 [AOTO]
431
356
-
Arg
TCT
[ENA]
¡û
>W141056029
AOTP01000089
Spirochaetota
Treponema pedis isoE1186 [AOTP]
2987
2912
-
Arg
TCT
[ENA]
¡û
>WENV181084471
OEAV01265373
[OEAV] human metagenome; G_DNA_Supragingival plaque
82
157
+
Arg
TCT
[ENA]
¡û
>WENV183704405
PDWI01000202
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
54386
54313
-
Arg
TCT
[ENA]
¡û
>WENV183707520
PDWI01008818
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
11536
11610
+
Arg
TCT
[ENA]
¡û
>WENV183711383
PDWI01068462
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1062
1137
+
Arg
TCT
[ENA]
¡û
>WENV183714475
PDWI01185332
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
990
1065
+
Arg
TCT
[ENA]
¡û
>WENV183714694
PDWI01198150
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
21
96
+
Arg
TCT
[ENA]
¡û
>WENV170671607
LAHU01103242
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
729
654
-
Arg
TCT
[ENA]
¡û
>C231045366
CP038803
Spirochaetota
Treponema putidum OMZ 846 [CP038803]
1901270
1901344
+
Arg
TCT
-
¡û
>C231062153
CP051198
Spirochaetota
Treponema sp. OMZ 787 [CP051198]
2332220
2332295
+
Arg
TCT
-
¡û
>C231062228
CP051200
Spirochaetota
Treponema sp. OMZ 789 [CP051200]
1802313
1802388
+
Arg
TCT
-
¡û
>C231062525
CP051302
Spirochaetota
Treponema denticola OMZ 853 [CP051302]
1691681
1691755
+
Arg
TCT
-
¡û
>C231062634
CP051304
Spirochaetota
Treponema denticola CD-1 [CP051304]
534051
533977
-
Arg
TCT
-
¡û
>C231062677
CP051305
Spirochaetota
Treponema sp. OMZ 798 [CP051305]
480976
480900
-
Arg
TCT
-
¡û
>C231062718
CP051522
Spirochaetota
Treponema denticola OMZ 910 [CP051522]
1063110
1063036
-
Arg
TCT
-
¡û
>C231070455
CP054477
Spirochaetota
Treponema denticola OMZ 823 [CP054477]
1699813
1699887
+
Arg
TCT
-
¡û
>C231078258
CP058347
Spirochaetota
Treponema denticola OKA3 [CP058347]
543221
543147
-
Arg
TCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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