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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239209 (96 seq.)
>W1711092529
LTEE01000042
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
11435
11360
-
Arg
TCT
[ENA]
¡û
>W1711093846
LTFJ01000012
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
27987
28060
+
Arg
TCT
[ENA]
¡û
>W1711095096
LTGN01000010
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
20414
20487
+
Arg
TCT
[ENA]
¡û
>W1711096266
LTHP01000079
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
3459
3384
-
Arg
TCT
[ENA]
¡û
>W1711096306
LTHQ01000023
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
20387
20462
+
Arg
TCT
[ENA]
¡û
>W1711096974
LTIG01000012
Actinomycetota
Corynebacterium sp. HMSC077G01 [LTIG]
1791
1718
-
Arg
TCT
[ENA]
¡û
>W1711097562
LTIU01000036
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
1990
1915
-
Arg
TCT
[ENA]
¡û
>W1711098014
LTJF01000007
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
153097
153172
+
Arg
TCT
[ENA]
¡û
>W1711098585
LTJR01000032
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
57237
57162
-
Arg
TCT
[ENA]
¡û
>W1711099051
LTKD01000024
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
2052
1977
-
Arg
TCT
[ENA]
¡û
>W1711099328
LTKK01000005
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
51085
51158
+
Arg
TCT
[ENA]
¡û
>W1711102260
LTNP01000010
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
6223
6150
-
Arg
TCT
[ENA]
¡û
>W1711102309
LTNQ01000010
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
99897
99972
+
Arg
TCT
[ENA]
¡û
>W1711102384
LTNR01000056
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
111562
111637
+
Arg
TCT
[ENA]
¡û
>W1711102413
LTNS01000009
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
99416
99491
+
Arg
TCT
[ENA]
¡û
>W1711102503
LTNT01000048
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
3003
2930
-
Arg
TCT
[ENA]
¡û
>W1711102514
LTNU01000017
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
99153
99228
+
Arg
TCT
[ENA]
¡û
>W1711102564
LTNV01000018
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
9353
9280
-
Arg
TCT
[ENA]
¡û
>W1711103296
LTOO01000032
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
30338
30413
+
Arg
TCT
[ENA]
¡û
>W1711103428
LTOS01000009
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
151972
152045
+
Arg
TCT
[ENA]
¡û
>W1711106991
LTSJ01000011
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
105746
105673
-
Arg
TCT
[ENA]
¡û
>W1711110079
LTVE01000051
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
115219
115294
+
Arg
TCT
[ENA]
¡û
>W1711112808
LTXS01000036
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
4123
4050
-
Arg
TCT
[ENA]
¡û
>W1711113438
LTYH01000020
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
27363
27438
+
Arg
TCT
[ENA]
¡û
>W1711114838
LTZQ01000016
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
143123
143198
+
Arg
TCT
[ENA]
¡û
>W1711114947
LTZS01000039
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
6244
6171
-
Arg
TCT
[ENA]
¡û
>W1711186831
LWON01000030
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
99466
99541
+
Arg
TCT
[ENA]
¡û
>W1711187899
LWPW01000081
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
20370
20445
+
Arg
TCT
[ENA]
¡û
>W1711427606
MIFV01000013
Actinomycetota
Corynebacterium amycolatum [MIFV]
31060
31133
+
Arg
TCT
[ENA]
¡û
>W1711507493
MKXS01000010
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
21034
20961
-
Arg
TCT
[ENA]
¡û
>W1711724024
MTPT01000033
Actinomycetota
Corynebacterium amycolatum [MTPT]
200
125
-
Arg
TCT
[ENA]
¡û
>W131000455
AGEM01000010
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
179541
179466
-
Arg
TCT
[ENA]
¡û
>WENV180554207
OCJN01000006
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
486247
486320
+
Arg
TCT
[ENA]
¢þ
>WENV180711576
ODFP01003759
[ODFP] human metagenome; G_DNA_Anterior nares
389
316
-
Arg
TCT
[ENA]
¢þ
>WENV180711950
ODFR01002654
[ODFR] human metagenome; G_DNA_R_Retroauricular crease
210
137
-
Arg
TCT
[ENA]
¢þ
>WENV180745532
ODHL01000011
[ODHL] human metagenome; G_DNA_L_Retroauricular crease
51885
51812
-
Arg
TCT
[ENA]
¢þ
>WENV180749717
ODHR01001580
[ODHR] human metagenome; G_DNA_Anterior nares
606
533
-
Arg
TCT
[ENA]
¢þ
>WENV180765709
ODIC01040509
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
75
2
-
Arg
TCT
[ENA]
¢þ
>WENV180855697
ODKY01002915
[ODKY] human metagenome; G_DNA_R_Retroauricular crease
176
103
-
Arg
TCT
[ENA]
¢þ
>WENV180878606
ODLX01000575
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
1305
1232
-
Arg
TCT
[ENA]
¢þ
>WENV180878782
ODLY01000030
[ODLY] human metagenome; G_DNA_Anterior nares
26591
26664
+
Arg
TCT
[ENA]
¢þ
>WENV180913518
ODSU01009798
[ODSU] human metagenome; G_DNA_Anterior nares
262
335
+
Arg
TCT
[ENA]
¢þ
>WENV180914915
ODTA01000087
[ODTA] human metagenome; G_DNA_Anterior nares
1124
1051
-
Arg
TCT
[ENA]
¢þ
>WENV180918028
ODTF01000025
[ODTF] human metagenome; G_DNA_Anterior nares
51887
51814
-
Arg
TCT
[ENA]
¢þ
>WENV180937510
ODTW01002825
[ODTW] human metagenome; G_DNA_Anterior nares
225
298
+
Arg
TCT
[ENA]
¢þ
>WENV180940255
ODTY01004644
[ODTY] human metagenome; G_DNA_Anterior nares
240
313
+
Arg
TCT
[ENA]
¢þ
>WENV180966779
ODUR01008532
[ODUR] human metagenome; G_DNA_Anterior nares
388
461
+
Arg
TCT
[ENA]
¢þ
>WENV180966910
ODUS01000136
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
5303
5376
+
Arg
TCT
[ENA]
¢þ
>WENV180972503
ODUV01003133
[ODUV] human metagenome; G_DNA_Anterior nares
162
89
-
Arg
TCT
[ENA]
¢þ
>WENV180984517
ODVH01000012
[ODVH] human metagenome; G_DNA_Anterior nares
5400
5473
+
Arg
TCT
[ENA]
¢þ
>WENV181006984
ODWC01001190
[ODWC] human metagenome; G_DNA_L_Retroauricular crease
2430
2503
+
Arg
TCT
[ENA]
¢þ
>WENV181010015
ODWG01000015
[ODWG] human metagenome; G_DNA_Anterior nares
13274
13201
-
Arg
TCT
[ENA]
¢þ
>WENV181012977
ODWL01003596
[ODWL] human metagenome; G_DNA_Anterior nares
371
443
+
Arg
TCT
[ENA]
¢þ
>WENV181024983
ODWY01000012
[ODWY] human metagenome; G_DNA_Anterior nares
26610
26683
+
Arg
TCT
[ENA]
¢þ
>WENV181030368
ODXG01007197
[ODXG] human metagenome; G_DNA_Anterior nares
204
277
+
Arg
TCT
[ENA]
¢þ
>WENV181032358
ODXM01001952
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
165
92
-
Arg
TCT
[ENA]
¢þ
>WENV181040420
ODXR01017442
[ODXR] human metagenome; G_DNA_Anterior nares
141
214
+
Arg
TCT
[ENA]
¢þ
>WENV181042291
ODXT01001435
[ODXT] human metagenome; G_DNA_R_Retroauricular crease
392
319
-
Arg
TCT
[ENA]
¢þ
>WENV181119605
OEFI01001114
[OEFI] human metagenome; G_DNA_Anterior nares
516
443
-
Arg
TCT
[ENA]
¢þ
>WENV181123350
OEFP01000025
[OEFP] human metagenome; G_DNA_R_Retroauricular crease
51885
51812
-
Arg
TCT
[ENA]
¢þ
>WENV181124335
OEFR01000022
[OEFR] human metagenome; G_DNA_Anterior nares
5321
5394
+
Arg
TCT
[ENA]
¢þ
>WENV181130971
OEFZ01000020
[OEFZ] human metagenome; G_DNA_Anterior nares
11684
11757
+
Arg
TCT
[ENA]
¢þ
>WENV181131022
OEFZ01000250
[OEFZ] human metagenome; G_DNA_Anterior nares
5246
5173
-
Arg
TCT
[ENA]
¢þ
>WENV181326380
OFLL01000216
[OFLL] metagenome; faeces
13261
13188
-
Arg
TCT
[ENA]
¢þ
>WENV182629029
OJKR01001497
[OJKR] metagenome; surface
1667
1594
-
Arg
TCT
[ENA]
¢þ
>WENV182629812
OJKV01000020
[OJKV] metagenome; surface
6081
6154
+
Arg
TCT
[ENA]
¢þ
>WENV182636040
OJKZ01000146
[OJKZ] metagenome; surface
33113
33186
+
Arg
TCT
[ENA]
¢þ
>WENV182640359
OJLB01004323
[OJLB] metagenome; surface
2022
2095
+
Arg
TCT
[ENA]
¢þ
>WENV182641311
OJLG01000099
[OJLG] metagenome; surface
5421
5494
+
Arg
TCT
[ENA]
¢þ
>WENV182641592
OJLJ01000006
[OJLJ] metagenome; surface
21291
21364
+
Arg
TCT
[ENA]
¢þ
>WENV182641822
OJLK01001829
[OJLK] metagenome; surface
1211
1284
+
Arg
TCT
[ENA]
¢þ
>WENV182642802
OJLP01001914
[OJLP] metagenome; surface
1153
1226
+
Arg
TCT
[ENA]
¢þ
>WENV182643281
OJLU01000167
[OJLU] metagenome; surface
1669
1596
-
Arg
TCT
[ENA]
¢þ
>WENV182643705
OJLW01000586
[OJLW] metagenome; surface
15293
15366
+
Arg
TCT
[ENA]
¢þ
>WENV182644905
OJLY01000743
[OJLY] metagenome; surface
15164
15237
+
Arg
TCT
[ENA]
¢þ
>WENV182645878
OJLZ01006924
[OJLZ] metagenome; surface
2033
1960
-
Arg
TCT
[ENA]
¢þ
>WENV182646340
OJMA01003742
[OJMA] metagenome; surface
158
231
+
Arg
TCT
[ENA]
¢þ
>WENV182671716
OJNM01001556
[OJNM] metagenome; surface
4749
4822
+
Arg
TCT
[ENA]
¢þ
>WENV182828274
OKDF01000633
[OKDF] human gut metagenome; human gut
3721
3794
+
Arg
TCT
[ENA]
¢þ
>WENV182837545
OKGJ01000130
[OKGJ] human gut metagenome; human gut
846
773
-
Arg
TCT
[ENA]
¢þ
>WENV182839754
OKHF01001289
[OKHF] human gut metagenome; human gut
1704
1631
-
Arg
TCT
[ENA]
¢þ
>C181056579
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
6232
6159
-
Arg
TCT
-
¡û
>C191111924
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
768885
768812
-
Arg
TCT
-
¡û
>W09114646
ABZU01000010
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
21983
22056
+
Arg
TCT
[ENA]
¡û
>W1810187636
PKHS01000012
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
6141
6068
-
Arg
TCT
[ENA]
¡û
>W1810187684
PKHT01000022
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
323
250
-
Arg
TCT
[ENA]
¡û
>C151013264
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
802430
802357
-
Arg
TCT
-
¡û
>C151039881
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
1903509
1903434
-
Arg
TCT
[Ensembl]
¡û
>C151048672
CP009312
Actinomycetota
Lawsonella clevelandensis X1036 [CP009312]
1568671
1568598
-
Arg
TCT
-
¡û
>C151094705
CP012390
Actinomycetota
Lawsonella clevelandensis X1698 [CP012390]
1623209
1623136
-
Arg
TCT
-
¡û
>W1511442780
JUSD01000042
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
53673
53598
-
Arg
TCT
[ENA]
¡û
>W1511457805
JVIP01000034
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
7562
7489
-
Arg
TCT
[ENA]
¡û
>W1511463595
JVOW01000011
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
5598
5525
-
Arg
TCT
[ENA]
¡û
>W1511464311
JVPT01000049
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
15274
15347
+
Arg
TCT
[ENA]
¡û
>W1511469478
JVVM01000026
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
157358
157433
+
Arg
TCT
[ENA]
¡û
>W1511476437
JWEP01000067
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
8326
8251
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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