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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239214 (120 seq.)
>W1711092561
LTEE01000084
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
9409
9484
+
Glu
TTC
[ENA]
¡û
>W1711093881
LTFJ01000024
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
41542
41617
+
Glu
TTC
[ENA]
¡û
>W1711095137
LTGN01000037
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
40396
40471
+
Glu
TTC
[ENA]
¡û
>W1711096248
LTHP01000024
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
120
45
-
Glu
TTC
[ENA]
¡û
>W1711096287
LTHQ01000003
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
19575
19650
+
Glu
TTC
[ENA]
¡û
>W1711097005
LTIG01000047
Actinomycetota
Corynebacterium sp. HMSC077G01 [LTIG]
6999
6924
-
Glu
TTC
[ENA]
¡û
>W1711097526
LTIU01000002
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
1897
1822
-
Glu
TTC
[ENA]
¡û
>W1711097670
LTIW01000091
Actinomycetota
Corynebacterium sp. HMSC058E07 [LTIW]
36922
36995
+
Glu
TTC
[ENA]
¡û
>W1711098054
LTJF01000031
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
106339
106414
+
Glu
TTC
[ENA]
¡û
>W1711098558
LTJR01000010
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
230436
230511
+
Glu
TTC
[ENA]
¡û
>W1711099034
LTKD01000004
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
141379
141454
+
Glu
TTC
[ENA]
¡û
>W1711099370
LTKK01000051
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
917
842
-
Glu
TTC
[ENA]
¡û
>W1711102250
LTNP01000006
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
262
187
-
Glu
TTC
[ENA]
¡û
>W1711102332
LTNQ01000033
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
51175
51250
+
Glu
TTC
[ENA]
¡û
>W1711102396
LTNR01000076
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
40803
40878
+
Glu
TTC
[ENA]
¡û
>W1711102432
LTNS01000032
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
296
221
-
Glu
TTC
[ENA]
¡û
>W1711102458
LTNT01000004
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
19569
19644
+
Glu
TTC
[ENA]
¡û
>W1711102547
LTNU01000065
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
19548
19623
+
Glu
TTC
[ENA]
¡û
>W1711102571
LTNV01000030
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
10907
10832
-
Glu
TTC
[ENA]
¡û
>W1711103287
LTOO01000022
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
10969
10894
-
Glu
TTC
[ENA]
¡û
>W1711103469
LTOS01000046
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
904
829
-
Glu
TTC
[ENA]
¡û
>W1711107031
LTSJ01000043
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
271
196
-
Glu
TTC
[ENA]
¡û
>W1711107361
LTSS01000075
Actinomycetota
Corynebacterium sp. HMSC073D01 [LTSS]
87458
87531
+
Glu
TTC
[ENA]
¡û
>W1711110074
LTVE01000048
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
14123
14198
+
Glu
TTC
[ENA]
¡û
>W1711112804
LTXS01000034
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
73947
74022
+
Glu
TTC
[ENA]
¡û
>W1711113413
LTYH01000008
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
51351
51426
+
Glu
TTC
[ENA]
¡û
>W1711114854
LTZQ01000030
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
5538
5463
-
Glu
TTC
[ENA]
¡û
>W1711114943
LTZS01000031
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
340
265
-
Glu
TTC
[ENA]
¡û
>W1711186033
LWNW01000035
Actinomycetota
Corynebacterium sp. HMSC08A12 [LWNW]
7014
6941
-
Glu
TTC
[ENA]
¡û
>W1711186808
LWON01000008
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
329
254
-
Glu
TTC
[ENA]
¡û
>W1711187051
LWOT01000018
Actinomycetota
Corynebacterium sp. HMSC28B08 [LWOT]
5383
5456
+
Glu
TTC
[ENA]
¡û
>W1711187871
LWPW01000006
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
16247
16322
+
Glu
TTC
[ENA]
¡û
>W1711427610
MIFV01000014
Actinomycetota
Corynebacterium amycolatum [MIFV]
35291
35366
+
Glu
TTC
[ENA]
¡û
>W1711507469
MKXS01000001
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
331
256
-
Glu
TTC
[ENA]
¡û
>W1711717114
MTGK01000023
Actinomycetota
Corynebacterium jeikeium [MTGK]
26348
26421
+
Glu
TTC
[ENA]
¡û
>W1711724029
MTPT01000044
Actinomycetota
Corynebacterium amycolatum [MTPT]
19759
19834
+
Glu
TTC
[ENA]
¡û
>W131000432
AGEM01000002
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
352
277
-
Glu
TTC
[ENA]
¡û
>W131164506
ARAV01000005
Actinomycetota
Corynebacterium lubricantis DSM 45231 [ARAV]
184220
184293
+
Glu
TTC
[ENA]
¡û
>W131169253
AREP01000011
Actinomycetota
Corynebacterium pilosum DSM 20521 [AREP]
6220
6145
-
Glu
TTC
[ENA]
¡û
>W131164590
ARAX01000004
Actinomycetota
Sciscionella marina DSM 45152 [ARAX]
262921
262994
+
Glu
TTC
[ENA]
¡û
>C005925
CR931997
Actinomycetota
Corynebacterium jeikeium K411 K411 [CR931997]
459830
459902
+
Glu
TTC
[Ensembl]
¡û
>WENV180402707
OBRQ01012411
[OBRQ] human gut metagenome; ENVO:feces
120
47
-
Glu
TTC
[ENA]
¢þ
>WENV180550236
OCIZ01058560
[OCIZ] human oral metagenome; human oral
180
252
+
Glu
TTC
[ENA]
¢þ
>WENV180554345
OCJN01000105
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
40665
40740
+
Glu
TTC
[ENA]
¢þ
>WENV180782437
ODIQ01000014
[ODIQ] human metagenome; G_DNA_Tongue dorsum
34012
34085
+
Glu
TTC
[ENA]
¢þ
>WENV180796171
ODJB01001736
[ODJB] human metagenome; G_DNA_Supragingival plaque
6675
6748
+
Glu
TTC
[ENA]
¢þ
>WENV180819336
ODJR01000049
[ODJR] human metagenome; G_DNA_Tongue dorsum
77596
77669
+
Glu
TTC
[ENA]
¢þ
>WENV181069627
ODZZ01122671
[ODZZ] human metagenome; G_DNA_Tongue dorsum
81
8
-
Glu
TTC
[ENA]
¢þ
>WENV181120248
OEFJ01013821
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
375
302
-
Glu
TTC
[ENA]
¢þ
>WENV181135360
OEGG01012792
[OEGG] human metagenome; G_DNA_Tongue dorsum
72
-1
-
Glu
TTC
[ENA]
¢þ
>WENV181179121
OEJT01001466
[OEJT] human metagenome; G_DNA_Supragingival plaque
11610
11683
+
Glu
TTC
[ENA]
¢þ
>WENV181212718
OFBT01000920
[OFBT] metagenome; hydrothermal vent
1318
1243
-
Glu
TTC
[ENA]
¢þ
>WENV181326427
OFLL01000409
[OFLL] metagenome; faeces
165
90
-
Glu
TTC
[ENA]
¢þ
>WENV182629004
OJKR01000995
[OJKR] metagenome; surface
5053
5126
+
Glu
TTC
[ENA]
¢þ
>WENV182636184
OJKZ01000801
[OJKZ] metagenome; surface
9841
9914
+
Glu
TTC
[ENA]
¢þ
>WENV182640279
OJLB01001737
[OJLB] metagenome; surface
5348
5421
+
Glu
TTC
[ENA]
¢þ
>WENV182643336
OJLU01002330
[OJLU] metagenome; surface
839
766
-
Glu
TTC
[ENA]
¢þ
>WENV182644863
OJLY01000590
[OJLY] metagenome; surface
11041
10968
-
Glu
TTC
[ENA]
¢þ
>WENV182645720
OJLZ01001221
[OJLZ] metagenome; surface
159
86
-
Glu
TTC
[ENA]
¢þ
>WENV182646256
OJMA01000619
[OJMA] metagenome; surface
6350
6425
+
Glu
TTC
[ENA]
¢þ
>WENV182837622
OKGJ01003108
[OKGJ] human gut metagenome; human gut
204
129
-
Glu
TTC
[ENA]
¢þ
>W141284046
JALM01000028
Actinomycetota
Sciscionella sp. SE31 [JALM]
68984
69057
+
Glu
TTC
[ENA]
¡û
>WENV183087805
OLJO01002000
[OLJO] human gut metagenome; human gut
1005
1080
+
Glu
TTC
[ENA]
¢þ
>WENV183508089
OMHB01000236
[OMHB] human oral metagenome; human oral
3719
3792
+
Glu
TTC
[ENA]
¢þ
>WENV183509075
OMHG01004531
[OMHG] human oral metagenome; human oral
335
408
+
Glu
TTC
[ENA]
¢þ
>WENV183509728
OMHJ01008287
[OMHJ] human oral metagenome; human oral
256
329
+
Glu
TTC
[ENA]
¢þ
>WENV183510996
OMHV01000385
[OMHV] human oral metagenome; human oral
881
808
-
Glu
TTC
[ENA]
¢þ
>WENV183511865
OMJG01007365
[OMJG] food metagenome; Cotija cheese
2945
3019
+
Glu
TTC
[ENA]
¢þ
>W141452866
JFCF01000031
Actinomycetota
Corynebacterium jeikeium [JFCF]
39560
39633
+
Glu
TTC
[ENA]
¡û
>W141452903
JFCG01000026
Actinomycetota
Corynebacterium jeikeium [JFCG]
7098
7025
-
Glu
TTC
[ENA]
¡û
>W141452951
JFCH01000031
Actinomycetota
Corynebacterium jeikeium [JFCH]
43082
43155
+
Glu
TTC
[ENA]
¡û
>W141453008
JFCI01000023
Actinomycetota
Corynebacterium jeikeium [JFCI]
450
377
-
Glu
TTC
[ENA]
¡û
>W141453032
JFCJ01000022
Actinomycetota
Corynebacterium jeikeium [JFCJ]
38826
38899
+
Glu
TTC
[ENA]
¡û
>W141453100
JFCK01000243
Actinomycetota
Corynebacterium jeikeium [JFCK]
38757
38830
+
Glu
TTC
[ENA]
¡û
>W141453155
JFCL01000032
Actinomycetota
Corynebacterium jeikeium [JFCL]
54197
54270
+
Glu
TTC
[ENA]
¡û
>W141453177
JFCM01000014
Actinomycetota
Corynebacterium jeikeium [JFCM]
16461
16534
+
Glu
TTC
[ENA]
¡û
>W141453253
JFCN01000050
Actinomycetota
Corynebacterium jeikeium [JFCN]
7046
6973
-
Glu
TTC
[ENA]
¡û
>W141453289
JFCO01000034
Actinomycetota
Corynebacterium jeikeium [JFCO]
1992
1919
-
Glu
TTC
[ENA]
¡û
>W141453320
JFCP01000011
Actinomycetota
Corynebacterium jeikeium [JFCP]
7192
7119
-
Glu
TTC
[ENA]
¡û
>W141453393
JFCQ01000019
Actinomycetota
Corynebacterium jeikeium [JFCQ]
39642
39715
+
Glu
TTC
[ENA]
¡û
>W141453453
JFCR01000014
Actinomycetota
Corynebacterium jeikeium [JFCR]
7287
7214
-
Glu
TTC
[ENA]
¡û
>C181056562
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
1478561
1478486
-
Glu
TTC
-
¡û
>C181214769
LS483459
Actinomycetota
Corynebacterium jeikeium NCTC11914 [LS483459]
2213077
2213004
-
Glu
TTC
-
¡û
>C181226208
LT906473
Actinomycetota
Corynebacterium cystitidis NCTC11863 [LT906473]
290114
290187
+
Glu
TTC
-
¡û
>C191111907
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
2110618
2110543
-
Glu
TTC
-
¡û
>W09113424
ABYP01000097
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51867 [ABYP]
87019
87092
+
Glu
TTC
[ENA]
¡û
>W09114667
ABZU01000028
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
10907
10832
-
Glu
TTC
[ENA]
¡û
>W09123807
ACHF01000011
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51866 [ACHF]
183130
183203
+
Glu
TTC
[ENA]
¡û
>W1910226168
FMTZ01000004
Actinomycetota
Corynebacterium jeikeium [FMTZ]
152479
152552
+
Glu
TTC
[ENA]
¡û
>W1911498438
OCTS01000003
Actinomycetota
Corynebacterium dentalis Marseille-P4122 [OCTS]
7303
7230
-
Glu
TTC
[ENA]
¡û
>W1911770958
QXJK01000008
Actinomycetota
Corynebacterium falsenii FN1-14 [QXJK]
11687
11614
-
Glu
TTC
[ENA]
¡û
>W1810118409
PHQP01000082
Actinomycetota
Corynebacterium heidelbergense DSM 104638 [PHQP]
4355
4282
-
Glu
TTC
[ENA]
¡û
>W1810187632
PKHS01000009
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
11052
10977
-
Glu
TTC
[ENA]
¡û
>W1810187689
PKHT01000033
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
394
319
-
Glu
TTC
[ENA]
¡û
>W1810623563
QHCV01000010
Actinomycetota
Corynebacterium heidelbergense 647 [QHCV]
4363
4290
-
Glu
TTC
[ENA]
¡û
>C151013247
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
2250024
2249949
-
Glu
TTC
-
¡û
>C151017662
CP007156
Actinomycetota
Corynebacterium falsenii DSM 44353 BL 8171 [CP007156]
549819
549892
+
Glu
TTC
[Ensembl]
¡û
>C151039888
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
779627
779552
-
Glu
TTC
[Ensembl]
¡û
>C151084400
CP011542
Actinomycetota
Corynebacterium mustelae DSM 45274 [CP011542]
2819630
2819555
-
Glu
TTC
[Ensembl]
¡û
>W10106872
ACYW01000031
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
8371
8298
-
Glu
TTC
[ENA]
¡û
>W10113762
ADGN01000008
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
247
174
-
Glu
TTC
[ENA]
¡û
>W10127832
AEET01000008
Actinomycetota
Mobiluncus mulieris ATCC 35239 [AEET]
23483
23408
-
Glu
TTC
[ENA]
¡û
>C11106295
CP002857
Actinomycetota
Corynebacterium resistens DSM 45100 [CP002857]
130723
130650
-
Glu
TTC
[Ensembl]
¡û
>W11109161
ACYW01000031
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
8371
8298
-
Glu
TTC
[ENA]
¡û
>W11117098
ADGN01000008
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
247
174
-
Glu
TTC
[ENA]
¡û
>W1511357116
JRVJ01000010
Actinomycetota
Corynebacterium auriscanis CIP 106629 [JRVJ]
61542
61469
-
Glu
TTC
[ENA]
¡û
>W1511439002
JUNC01000037
Actinomycetota
Corynebacterium jeikeium 931_CJEI [JUNC]
5355
5428
+
Glu
TTC
[ENA]
¡û
>W1511442764
JUSD01000014
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
153
78
-
Glu
TTC
[ENA]
¡û
>W1511457809
JVIP01000036
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
1600
1525
-
Glu
TTC
[ENA]
¡û
>W1511459400
JVKJ01000004
Actinomycetota
Corynebacterium falsenii 355_CFAL [JVKJ]
15052
14979
-
Glu
TTC
[ENA]
¡û
>W1511463630
JVOW01000036
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
11095
11020
-
Glu
TTC
[ENA]
¡û
>W1511464321
JVPT01000059
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
43259
43334
+
Glu
TTC
[ENA]
¡û
>W1511469458
JVVM01000017
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
42990
43065
+
Glu
TTC
[ENA]
¡û
>W1511476413
JWEP01000024
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
39480
39555
+
Glu
TTC
[ENA]
¡û
>W11135320
AEET01000008
Actinomycetota
Mobiluncus mulieris ATCC 35239 [AEET]
23483
23408
-
Glu
TTC
[ENA]
¡û
>W1511644848
LDYD01000011
Actinomycetota
Corynebacterium pilosum CIP103422 [LDYD]
89413
89488
+
Glu
TTC
[ENA]
¡û
>W11164152
AFIZ01000019
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
61989
61916
-
Glu
TTC
[ENA]
¡û
>C131012707
CP004085
Actinomycetota
Corynebacterium urealyticum DSM 7111 [CP004085]
1835982
1835909
-
Glu
TTC
[Ensembl]
¡û
>W1710552164
FOGQ01000016
Actinomycetota
Corynebacterium cystitidis DSM 20524 [FOGQ]
45600
45675
+
Glu
TTC
[ENA]
¡û
>W1710605219
FWWS01000024
Actinomycetota
Corynebacterium glucuronolyticum [FWWS]
177501
177574
+
Glu
TTC
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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