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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239230 (80 seq.)
>W1711093749
LTFH01000009
Actinomycetota
Corynebacterium sp. HMSC062E11 HMSC062E11 [LTFH]
13505
13432
-
Arg
CCT
[ENA]
¡û
>W1711094342
LTFV01000054
Actinomycetota
Corynebacterium sp. HMSC078A10 [LTFV]
6932
6859
-
Arg
CCT
[ENA]
¡û
>W1711094422
LTFX01000020
Actinomycetota
Corynebacterium sp. HMSC076G08 HMSC076G08 [LTFX]
103937
104010
+
Arg
CCT
[ENA]
¡û
>W1711094983
LTGK01000084
Actinomycetota
Corynebacterium sp. HMSC068H04 HMSC068H04 [LTGK]
39528
39455
-
Arg
CCT
[ENA]
¡û
>W1711095307
LTGR01000049
Actinomycetota
Corynebacterium sp. HMSC062A03 [LTGR]
12236
12163
-
Arg
CCT
[ENA]
¡û
>W1711095992
LTHJ01000033
Actinomycetota
Corynebacterium sp. HMSC065D07 [LTHJ]
337
264
-
Arg
CCT
[ENA]
¡û
>W1711097232
LTIM01000014
Actinomycetota
Corynebacterium sp. HMSC072A02 [LTIM]
37887
37814
-
Arg
CCT
[ENA]
¡û
>W1711098694
LTJU01000091
Actinomycetota
Corynebacterium sp. HMSC055A01 [LTJU]
45786
45713
-
Arg
CCT
[ENA]
¡û
>W1711099020
LTKC01000105
Actinomycetota
Corynebacterium sp. HMSC072A04 [LTKC]
164519
164592
+
Arg
CCT
[ENA]
¡û
>W1711099717
LTKS01000040
Actinomycetota
Corynebacterium sp. HMSC070E08 [LTKS]
381
308
-
Arg
CCT
[ENA]
¡û
>W1711099789
LTKT01000056
Actinomycetota
Corynebacterium sp. HMSC074E01 [LTKT]
134403
134476
+
Arg
CCT
[ENA]
¡û
>W1711108160
LTTL01000056
Actinomycetota
Corynebacterium sp. HMSC034H07 HMSC034H07 [LTTL]
14945
15018
+
Arg
CCT
[ENA]
¡û
>W1711108698
LTTZ01000037
Actinomycetota
Corynebacterium sp. HMSC068G04 [LTTZ]
7476
7403
-
Arg
CCT
[ENA]
¡û
>W1711109313
LTUN01000080
Actinomycetota
Corynebacterium sp. HMSC074C01 [LTUN]
2514
2587
+
Arg
CCT
[ENA]
¡û
>W1711109478
LTUR01000085
Actinomycetota
Corynebacterium sp. HMSC078C09 [LTUR]
13314
13241
-
Arg
CCT
[ENA]
¡û
>W1711109789
LTUY01000044
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
38616
38543
-
Arg
CCT
[ENA]
¡û
>W1711110980
LTWA01000091
Actinomycetota
Corynebacterium sp. HMSC074H12 [LTWA]
161893
161966
+
Arg
CCT
[ENA]
¡û
>W1711111621
LTWQ01000017
Actinomycetota
Corynebacterium sp. HMSC056E09 [LTWQ]
175967
176040
+
Arg
CCT
[ENA]
¡û
>W1711186581
LWOI01000057
Actinomycetota
Corynebacterium sp. HMSC05E07 [LWOI]
12372
12447
+
Arg
CCT
[ENA]
¡û
>W1711186698
LWOK01000037
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
161678
161751
+
Arg
CCT
[ENA]
¡û
>W1711188276
LWQH01000046
Actinomycetota
Corynebacterium sp. HMSC069E04 [LWQH]
6909
6836
-
Arg
CCT
[ENA]
¡û
>W131160928
AQXC01000010
Actinomycetota
Corynebacterium propinquum DSM 44285 [AQXC]
30615
30542
-
Arg
CCT
[ENA]
¡û
>WENV180228700
OBCD01013785
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
209
136
-
Arg
CCT
[ENA]
¢þ
>WENV180711404
ODFN01001675
[ODFN] human metagenome; G_DNA_Anterior nares
647
574
-
Arg
CCT
[ENA]
¢þ
>WENV180711524
ODFP01000102
[ODFP] human metagenome; G_DNA_Anterior nares
1565
1490
-
Arg
CCT
[ENA]
¢þ
>WENV180723938
ODGP01000751
[ODGP] human metagenome; G_DNA_Anterior nares
34
107
+
Arg
CCT
[ENA]
¢þ
>WENV180732112
ODGX01000168
[ODGX] human metagenome; G_DNA_Anterior nares
3047
2974
-
Arg
CCT
[ENA]
¢þ
>WENV180766228
ODIE01000074
[ODIE] human metagenome; G_DNA_Anterior nares
10215
10140
-
Arg
CCT
[ENA]
¢þ
>WENV180836517
ODKF01000310
[ODKF] human metagenome; G_DNA_Anterior nares
4082
4157
+
Arg
CCT
[ENA]
¢þ
>WENV180844710
ODKO01000092
[ODKO] human metagenome; G_DNA_Anterior nares
344
419
+
Arg
CCT
[ENA]
¢þ
>WENV180875556
ODLS01003170
[ODLS] human metagenome; G_DNA_Anterior nares
151
78
-
Arg
CCT
[ENA]
¢þ
>WENV180878911
ODLY01001515
[ODLY] human metagenome; G_DNA_Anterior nares
40
115
+
Arg
CCT
[ENA]
¢þ
>WENV180913412
ODSU01000020
[ODSU] human metagenome; G_DNA_Anterior nares
9075
9000
-
Arg
CCT
[ENA]
¢þ
>WENV180916338
ODTC01010776
[ODTC] human metagenome; G_DNA_Anterior nares
187
260
+
Arg
CCT
[ENA]
¢þ
>WENV180917855
ODTE01000078
[ODTE] human metagenome; G_DNA_Anterior nares
3983
4058
+
Arg
CCT
[ENA]
¢þ
>WENV180918052
ODTF01000042
[ODTF] human metagenome; G_DNA_Anterior nares
23683
23758
+
Arg
CCT
[ENA]
¢þ
>WENV180937518
ODTW01003930
[ODTW] human metagenome; G_DNA_Anterior nares
711
636
-
Arg
CCT
[ENA]
¢þ
>WENV180966743
ODUR01002541
[ODUR] human metagenome; G_DNA_Anterior nares
250
177
-
Arg
CCT
[ENA]
¢þ
>WENV180972521
ODUV01005240
[ODUV] human metagenome; G_DNA_Anterior nares
51
124
+
Arg
CCT
[ENA]
¢þ
>WENV180984599
ODVH01006213
[ODVH] human metagenome; G_DNA_Anterior nares
61
134
+
Arg
CCT
[ENA]
¢þ
>WENV181000339
ODVU01007145
[ODVU] human metagenome; G_DNA_Anterior nares
410
335
-
Arg
CCT
[ENA]
¢þ
>WENV181010126
ODWG01001387
[ODWG] human metagenome; G_DNA_Anterior nares
614
689
+
Arg
CCT
[ENA]
¢þ
>WENV181010143
ODWG01002175
[ODWG] human metagenome; G_DNA_Anterior nares
975
900
-
Arg
CCT
[ENA]
¢þ
>WENV181040316
ODXR01000006
[ODXR] human metagenome; G_DNA_Anterior nares
10612
10537
-
Arg
CCT
[ENA]
¢þ
>WENV181119513
OEFI01000011
[OEFI] human metagenome; G_DNA_Anterior nares
8016
8091
+
Arg
CCT
[ENA]
¢þ
>WENV181131422
OEGC01000058
[OEGC] human metagenome; G_DNA_Anterior nares
21148
21075
-
Arg
CCT
[ENA]
¢þ
>WENV181326260
OFLL01000021
[OFLL] metagenome; faeces
7793
7720
-
Arg
CCT
[ENA]
¢þ
>W141154885
AXLN01000008
Actinomycetota
Corynebacterium sp. KPL2004 [AXLN]
51807
51732
-
Arg
CCT
[ENA]
¡û
>W141154939
AXLO01000005
Actinomycetota
Corynebacterium sp. KPL1998 [AXLO]
447300
447375
+
Arg
CCT
[ENA]
¡û
>W141154966
AXLP01000001
Actinomycetota
Corynebacterium sp. KPL1996 [AXLP]
893109
893034
-
Arg
CCT
[ENA]
¡û
>W141155102
AXLS01000001
Actinomycetota
Corynebacterium sp. KPL1986 [AXLS]
51807
51732
-
Arg
CCT
[ENA]
¡û
>W141155238
AXLU01000026
Actinomycetota
Corynebacterium sp. KPL1859 [AXLU]
35962
35887
-
Arg
CCT
[ENA]
¡û
>W141155372
AXLX01000011
Actinomycetota
Corynebacterium sp. KPL1855 [AXLX]
27015
27090
+
Arg
CCT
[ENA]
¡û
>W141155420
AXLY01000003
Actinomycetota
Corynebacterium sp. KPL1824 [AXLY]
49282
49207
-
Arg
CCT
[ENA]
¡û
>W141155543
AXMA01000010
Actinomycetota
Corynebacterium sp. KPL1818 [AXMA]
49610
49535
-
Arg
CCT
[ENA]
¡û
>W141155619
AXMC01000007
Actinomycetota
Corynebacterium sp. KPL1814 [AXMC]
36110
36035
-
Arg
CCT
[ENA]
¡û
>WENV182636243
OJKZ01001398
[OJKZ] metagenome; surface
90
17
-
Arg
CCT
[ENA]
¢þ
>WENV182642065
OJLL01000392
[OJLL] metagenome; surface
6781
6856
+
Arg
CCT
[ENA]
¢þ
>WENV182643279
OJLU01000122
[OJLU] metagenome; surface
2361
2434
+
Arg
CCT
[ENA]
¢þ
>WENV182643944
OJLW01003689
[OJLW] metagenome; surface
97
24
-
Arg
CCT
[ENA]
¢þ
>WENV182645173
OJLY01003697
[OJLY] metagenome; surface
4124
4197
+
Arg
CCT
[ENA]
¢þ
>WENV182671509
OJNM01000084
[OJNM] metagenome; surface
1464
1537
+
Arg
CCT
[ENA]
¢þ
>C181214814
LS483460
Actinomycetota
Corynebacterium minutissimum NCTC10288 [LS483460]
1871552
1871625
+
Arg
CCT
-
¡û
>C191207696
LR134339
Actinomycetota
Corynebacterium minutissimum NCTC10285 [LR134339]
1059841
1059768
-
Arg
CCT
-
¡û
>C191210978
LR134408
Actinomycetota
Corynebacterium segmentosum NCTC934 [LR134408]
730183
730108
-
Arg
CCT
-
¡û
>W09122378
ACGD01000001
Actinomycetota
Corynebacterium accolens ATCC 49725 [ACGD]
40710
40635
-
Arg
CCT
[ENA]
¡û
>W09127829
ACLH01000015
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 [ACLH]
6491
6564
+
Arg
CCT
[ENA]
¡û
>C09102769
CP001601
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 DSM 44827; ATCC 700975 [CP001601]
864981
864908
-
Arg
CCT
[Ensembl]
¡û
>W1911596637
PNHI01000003
Actinomycetota
Corynebacterium aurimucosum UMB1300 [PNHI]
38761
38688
-
Arg
CCT
[ENA]
¡û
>C151073148
CP010827
Actinomycetota
Corynebacterium singulare IBS B52218 [CP010827]
916253
916178
-
Arg
CCT
[Ensembl]
¡û
>W10127193
AEED01000081
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
21604
21529
-
Arg
CCT
[ENA]
¡û
>W1511365577
JSEF01000021
Actinomycetota
Corynebacterium minutissimum ATCC 23348 [JSEF]
25150
25223
+
Arg
CCT
[ENA]
¡û
>W1511438552
JUMN01000049
Actinomycetota
Corynebacterium aurimucosum 945_CAUR [JUMN]
18563
18636
+
Arg
CCT
[ENA]
¡û
>W1511466804
JVSI01000039
Actinomycetota
Corynebacterium propinquum 149_CJEI [JVSI]
72963
73036
+
Arg
CCT
[ENA]
¡û
>W1511467008
JVSN01000024
Actinomycetota
Corynebacterium propinquum 143_CAUR [JVSN]
90457
90530
+
Arg
CCT
[ENA]
¡û
>W1511469885
JVVY01000068
Actinomycetota
Corynebacterium propinquum 1274_CJEI [JVVY]
36073
36000
-
Arg
CCT
[ENA]
¡û
>W11134681
AEED01000081
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
21604
21529
-
Arg
CCT
[ENA]
¡û
>W1511585497
LAYQ01000001
Actinomycetota
Corynebacterium minutissimum 1941 [LAYQ]
105128
105201
+
Arg
CCT
[ENA]
¡û
>W1610068176
BCRC01000020
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
5632
5559
-
Arg
CCT
[ENA]
¡û
>W1710065549
BCRC01000020
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
5632
5559
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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