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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239275 (23 seq.)
>W1711183517
LWLC01000001
Actinomycetota
Saccharothrix sp. CB00851 [LWLC]
573933
573860
-
Glu
TTC
[ENA]
¡û
>W131222182
AUBB01000016
Actinomycetota
Pseudonocardia spinosispora DSM 44797 [AUBB]
161314
161387
+
Glu
TTC
[ENA]
¡û
>W1711724960
MTQP01000068
Actinomycetota
Saccharothrix sp. ALI-22-I [MTQP]
842223
842296
+
Glu
TTC
[ENA]
¡û
>W1711749180
MUMH01000064
Actinomycetota
Allokutzneria sp. NRRL B-24872 [MUMH]
99180
99253
+
Glu
TTC
[ENA]
¡û
>W141000348
ACQP01000285
Actinomycetota
Kutzneria sp. 744 [ACQP]
33963
34036
+
Glu
TTC
[ENA]
¡û
>WENV180291469
OBIV01064526
[OBIV] soil metagenome; Clay
157
84
-
Glu
TTC
[ENA]
¢þ
>WENV180343216
OBLK01000247
[OBLK] soil metagenome; Clay
14226
14299
+
Glu
TTC
[ENA]
¢þ
>WENV181297830
OFHL01000117
[OFHL] soil metagenome; Clay
1404
1331
-
Glu
TTC
[ENA]
¢þ
>C181081525
CP023445
Actinomycetota
Actinosynnema pretiosum X47 [CP023445]
7798351
7798278
-
Glu
TTC
-
¡û
>C191064797
CP029607
Actinomycetota
Actinosynnema pretiosum subsp. pretiosum ATCC 31280 [CP029607]
8020047
8019974
-
Glu
TTC
-
¡û
>W09108153
ABTA01000040
Actinomycetota
Actinosynnema mirum DSM 43827 [ABTA]
32288
32361
+
Glu
TTC
[ENA]
¡û
>W141756289
JNXC01000001
Actinomycetota
Saccharothrix sp. NRRL B-16314 [JNXC]
597392
597465
+
Glu
TTC
[ENA]
¡û
>W141757602
JNYA01000153
Actinomycetota
Actinosynnema pretiosum subsp. auranticum [JNYA]
2796
2869
+
Glu
TTC
[ENA]
¡û
>W141757951
JNYH01000004
Actinomycetota
Kutzneria albida [JNYH]
27825
27750
-
Glu
TTC
[ENA]
¡û
>W141758363
JNYO01000004
Actinomycetota
Saccharothrix syringae [JNYO]
445411
445484
+
Glu
TTC
[ENA]
¡û
>W141758712
JNYU01000579
Actinomycetota
Umezawaea tangerina [JNYU]
7637
7710
+
Glu
TTC
[ENA]
¡û
>C09100637
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
7929976
7929903
-
Glu
TTC
[Ensembl]
¡û
>W1810364412
PVTF01000003
Actinomycetota
Umezawaea tangerina DSM 44720 [PVTF]
71341
71414
+
Glu
TTC
[ENA]
¡û
>W1810393091
PYAX01000006
Actinomycetota
Saccharothrix carnea CGMCC 4.7097 [PYAX]
514092
514019
-
Glu
TTC
[ENA]
¡û
>W1810885749
QUNO01000001
Actinomycetota
Kutzneria buriramensis DSM 45791 [QUNO]
319482
319555
+
Glu
TTC
[ENA]
¡û
>C151017633
CP007155
Actinomycetota
Kutzneria albida DSM 43870 [CP007155]
9431109
9431034
-
Glu
TTC
[Ensembl]
¡û
>W1511697760
LGED01000262
Actinomycetota
Saccharothrix sp. NRRL B-16348 [LGED]
29459
29532
+
Glu
TTC
[ENA]
¡û
>C131019813
HE804045
Actinomycetota
Saccharothrix espanaensis DSM 44229 type strain: DSM 44229 [HE804045]
8967812
8967739
-
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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