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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239591 (39 seq.)
>W1710792791
LJOP01000054
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
28232
28307
+
His
GTG
[ENA]
¡û
>W1710792838
LJOQ01000057
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
15497
15422
-
His
GTG
[ENA]
¡û
>W1710792956
LJOV01000114
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
3436
3511
+
His
GTG
[ENA]
¡û
>W1711283602
LZQD01000001
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
327898
327825
-
His
GTG
[ENA]
¡û
>W1711666612
MRCD01000009
Cyanobacteriota
Calothrix sp. HK-06 [MRCD]
121059
120986
-
His
GTG
[ENA]
¡û
>W1711711417
MTAX01000018
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
71994
71921
-
His
GTG
[ENA]
¡û
>W131058313
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
3378721
3378794
+
His
GTG
[ENA]
¡û
>W131036229
ALVJ01000018
Cyanobacteriota
Calothrix sp. PCC 7103 [ALVJ]
217408
217335
-
His
GTG
[ENA]
¡û
>WENV180364083
OBNZ01075622
[OBNZ] marine metagenome; ENVO:00002010
261
334
+
His
GTG
[ENA]
¢þ
>W141038296
ALVL01000024
Cyanobacteriota
Pleurocapsa sp. PCC 7319 [ALVL]
2429687
2429612
-
His
GTG
[ENA]
¡û
>W141038663
ALWB01000060
Cyanobacteriota
Pseudanabaena biceps PCC 7429 [ALWB]
18858
18931
+
His
GTG
[ENA]
¡û
>W141038769
ALWD01000140
Cyanobacteriota
[Scytonema hofmanni] UTEX B 1581 UTEX 2349 [ALWD]
31929
32002
+
His
GTG
[ENA]
¡û
>C08006900
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
2304274
2304349
+
His
GTG
[Ensembl]
¡û
>WENV170002185
AGSF01000042
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
339
266
-
His
GTG
[ENA]
¢þ
>WENV170002247
AGSF01001149
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
2534
2607
+
His
GTG
[ENA]
¢þ
>WENV170002286
AGSF01004755
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
656
583
-
His
GTG
[ENA]
¢þ
>WENV170956510
MJUP01033683
[MJUP] soil metagenome; viral particles from soil sample MGM
333
258
-
His
GTG
[ENA]
¢þ
>WENV170995893
MWWF01085403
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
90
163
+
His
GTG
[ENA]
¢þ
>WENV170998721
MWWJ01088531
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
488
415
-
His
GTG
[ENA]
¢þ
>WENV171003127
NNBT01001570
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
425
350
-
His
GTG
[ENA]
¢þ
>C181004759
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
5304574
5304647
+
His
GTG
-
¡û
>C181004916
AP018255
Cyanobacteriota
Calothrix sp. NIES-4071 [AP018255]
1871062
1871135
+
His
GTG
-
¡û
>W1910008397
BDGE01000023
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
199955
199882
-
His
GTG
[ENA]
¡û
>W1911118671
NOLI01000111
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
8967
9040
+
His
GTG
[ENA]
¡û
>W1911118710
NOLJ01000001
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
322737
322810
+
His
GTG
[ENA]
¡û
>W1911244271
NSHF01000175
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
5201
5128
-
His
GTG
[ENA]
¡û
>W1911638295
PVWJ01000034
Cyanobacteriota
Merismopedia glauca CCAP 1448/3 [PVWJ]
27094
27021
-
His
GTG
[ENA]
¡û
>W1810366334
PVWI01000023
Cyanobacteriota
filamentous cyanobacterium Phorm 6 [PVWI]
33065
33138
+
His
GTG
[ENA]
¡û
>C151004191
CP003284
Cyanobacteriota
Anabaena sp. 90 [CP003284, CP003285]
1188540
1188465
-
His
GTG
[Ensembl]
¡û
>W1511397003
JTCM01000002
Cyanobacteriota
Hassalia byssoidea VB512170 [JTCM]
1025724
1025651
-
His
GTG
[ENA]
¡û
>W11164245
AFJC01000019
Cyanobacteriota
Microcoleus vaginatus FGP-2 [AFJC]
12996
13069
+
His
GTG
[ENA]
¡û
>C131004709
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
6317643
6317716
+
His
GTG
[Ensembl]
¡û
>C131004766
CP003614
Cyanobacteriota
Oscillatoria nigro-viridis PCC 7112 [CP003614]
3764389
3764462
+
His
GTG
[Ensembl]
¡û
>C131004960
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
827233
827160
-
His
GTG
[Ensembl]
¡û
>W1610656716
LJOP01000054
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
28232
28307
+
His
GTG
[ENA]
¡û
>W1610656763
LJOQ01000057
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
15497
15422
-
His
GTG
[ENA]
¡û
>W1610656960
LJOV01000114
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
3436
3511
+
His
GTG
[ENA]
¡û
>W1610931002
LUFH01000042
Cyanobacteriota
Sphaerospermopsis aphanizomenoides BCCUSP55 [LUFH]
4770
4843
+
His
GTG
[ENA]
¡û
>W1710088063
BDUC01000010
Cyanobacteriota
Tolypothrix sp. NIES-4075 [BDUC]
147752
147825
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK