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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239593 (61 seq.)
>W1711081227
LSSA01000089
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
14044
14116
+
Phe
GAA
[ENA]
¡û
>W1711120932
LUHJ01000061
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
327426
327499
+
Phe
GAA
[ENA]
¡û
>W1711283608
LZQD01000002
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
926715
926642
-
Phe
GAA
[ENA]
¡û
>W1711577099
MNPM01000031
Cyanobacteriota
Mastigocladus laminosus 74 [MNPM]
244301
244226
-
Phe
GAA
[ENA]
¡û
>W1711666682
MRCE01000008
Cyanobacteriota
Phormidium ambiguum IAM M-71 [MRCE]
70332
70404
+
Phe
GAA
[ENA]
¡û
>W131035992
AJUB01000005
Cyanobacteriota
Leptolyngbyaceae cyanobacterium JSC-12 JSC-12 [AJUB]
1392280
1392208
-
Phe
GAA
[ENA]
¡û
>W131036489
ALVS01000066
Cyanobacteriota
Fischerella sp. PCC 9339 [ALVS]
137022
137097
+
Phe
GAA
[ENA]
¡û
>W131090004
AOFE01000074
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
132222
132294
+
Phe
GAA
[ENA]
¡û
>C021100
AP008231
Cyanobacteriota
Synechococcus elongatus PCC 6301 [AP008231]
1838514
1838442
-
Phe
GAA
[Ensembl]
¡û
>C021143
CP000100
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [CP000100]
2478513
2478585
+
Phe
GAA
[Ensembl]
¡û
>w021705
AAVW01000064
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
31165
31240
+
Phe
GAA
[ENA]
¡û
>W141021283
AJLJ01000501
Cyanobacteriota
Fischerella muscicola SAG 1427-1 = PCC 73103 [AJLJ]
8642
8570
-
Phe
GAA
[ENA]
¡û
>W141021329
AJLK01000175
Cyanobacteriota
Fischerella muscicola PCC 7414 [AJLK]
19596
19521
-
Phe
GAA
[ENA]
¡û
>w002258
AAAY02000018
Cyanobacteriota
Nostoc punctiforme [AAAY]
8911
8986
+
Phe
GAA
[ENA]
¡û
>W141038366
ALVT01000002
Cyanobacteriota
Fischerella sp. PCC 9605 [ALVT]
356241
356313
+
Phe
GAA
[ENA]
¡û
>W141038496
ALVX01000014
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
306546
306474
-
Phe
GAA
[ENA]
¡û
>W141038752
ALWD01000079
Cyanobacteriota
[Scytonema hofmanni] UTEX B 1581 UTEX 2349 [ALWD]
263178
263106
-
Phe
GAA
[ENA]
¡û
>WENV181412015
OGCI01070848
[OGCI] hot springs metagenome; Hot spring water
626
701
+
Phe
GAA
[ENA]
¢þ
>C08012617
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
5689614
5689689
+
Phe
GAA
[Ensembl]
¡û
>WENV183702557
PDVI01002979
[PDVI] alkali sediment metagenome; glacial lake sediment
1509
1434
-
Phe
GAA
[ENA]
¢þ
>WENV170291431
CESA01128184
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
925
853
-
Phe
GAA
[ENA]
¢þ
>WENV170826425
MDSY01110565
[MDSY] marine metagenome; seawater
6369
6441
+
Phe
GAA
[ENA]
¢þ
>WENV170926339
MDTG01098519
[MDTG] marine metagenome; seawater
869
941
+
Phe
GAA
[ENA]
¢þ
>WENV170995475
MWWF01012087
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
1066
994
-
Phe
GAA
[ENA]
¢þ
>WENV170998791
MWWJ01108270
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
142
66
-
Phe
GAA
[ENA]
¢þ
>WENV171003107
NNBT01001170
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
3151
3079
-
Phe
GAA
[ENA]
¢þ
>WENV171003478
NNBU01000087
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
24397
24469
+
Phe
GAA
[ENA]
¢þ
>WENV171003687
NNBV01000179
[NNBV] plant metagenome; symbiotic tissue sample KVS11
13491
13419
-
Phe
GAA
[ENA]
¢þ
>C181043634
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
4253841
4253769
-
Phe
GAA
-
¡û
>C181105228
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
2912092
2912164
+
Phe
GAA
-
¡û
>C181137715
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4176082
4176154
+
Phe
GAA
-
¡û
>C181137850
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
4904916
4904844
-
Phe
GAA
-
¡û
>C191083051
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
5372507
5372579
+
Phe
GAA
-
¡û
>C191099572
CP033061
Cyanobacteriota
Synechococcus elongatus UTEX 3055 [CP033061]
1366753
1366680
-
Phe
GAA
-
¡û
>W09101108
AADZ01000001
Cyanobacteriota
Synechococcus elongatus PCC 7942 [AADZ]
1767135
1767208
+
Phe
GAA
[ENA]
¡û
>W1910020528
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
5409741
5409669
-
Phe
GAA
[ENA]
¡û
>W1910646709
LWSY01000198
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
31934
32006
+
Phe
GAA
[ENA]
¡û
>W1910812537
MVDI01000001
Cyanobacteriota
Chroococcidiopsis sp. TS-821 [MVDI]
413360
413285
-
Phe
GAA
[ENA]
¡û
>W1910842087
NAPS01000002
Cyanobacteriota
Westiellopsis prolifica IICB1 [NAPS]
425412
425484
+
Phe
GAA
[ENA]
¡û
>W1911070683
NMQA01000283
Cyanobacteriota
Fischerella thermalis CCMEE 5268 [NMQA]
19593
19667
+
Phe
GAA
[ENA]
¡û
>W1911070854
NMQE01000570
Cyanobacteriota
Fischerella thermalis CCMEE 5318 [NMQE]
1390
1318
-
Phe
GAA
[ENA]
¡û
>W1911071034
NMQJ01000109
Cyanobacteriota
Fischerella thermalis CCMEE 5205 [NMQJ]
16413
16485
+
Phe
GAA
[ENA]
¡û
>W1911071091
NMQK01000500
Cyanobacteriota
Fischerella thermalis CCMEE 5201 [NMQK]
9105
9177
+
Phe
GAA
[ENA]
¡û
>W1911118649
NOLI01000016
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
41580
41508
-
Phe
GAA
[ENA]
¡û
>W1911118758
NOLJ01000007
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
58145
58073
-
Phe
GAA
[ENA]
¡û
>W1911118825
NOLK01000093
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
4882
4954
+
Phe
GAA
[ENA]
¡û
>W1911178297
NQMF01000287
Cyanobacteriota
Fischerella thermalis CCMEE 5328 [NQMF]
5700
5772
+
Phe
GAA
[ENA]
¡û
>W1911218629
NRQW01000109
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
20153
20081
-
Phe
GAA
[ENA]
¡û
>W1911244253
NSHF01000007
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
46054
45982
-
Phe
GAA
[ENA]
¡û
>W1810296693
PTJN01000006
Cyanobacteriota
Gloeocapsopsis dulcis AAB1 [PTJN]
7833
7759
-
Phe
GAA
[ENA]
¡û
>C151009176
CP006471
Cyanobacteriota
Synechococcus elongatus UTEX 2973 [CP006471]
785965
785892
-
Phe
GAA
[Ensembl]
¡û
>W1511504572
JXIJ01000078
Cyanobacteriota
Mastigocladus laminosus UU774 [JXIJ]
244301
244226
-
Phe
GAA
[ENA]
¡û
>C161005342
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
5183028
5183100
+
Phe
GAA
[Ensembl]
¡û
>C131004538
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
2453196
2453124
-
Phe
GAA
[Ensembl]
¡û
>C131004419
CP003591
Cyanobacteriota
Geitlerinema sp. PCC 7407 [CP003591]
210731
210659
-
Phe
GAA
[Ensembl]
¡û
>C131004931
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
5489404
5489332
-
Phe
GAA
[Ensembl]
¡û
>C131010311
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
6855698
6855770
+
Phe
GAA
[Ensembl]
¡û
>W1610932105
LUHI01000003
Cyanobacteriota
Anabaena sp. CA = ATCC 33047 [LUHI]
42392
42319
-
Phe
GAA
[ENA]
¡û
>W1610932169
LUHJ01000061
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
327426
327499
+
Phe
GAA
[ENA]
¡û
>W1610979380
LWAJ01000032
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
16809
16737
-
Phe
GAA
[ENA]
¡û
>W1710087980
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
4533168
4533240
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK