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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239594 (55 seq.)
>W1710882902
LMVE01000115
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
14789
14716
-
Arg
TCT
[ENA]
¡û
>W1711081213
LSSA01000026
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
39070
39144
+
Arg
TCT
[ENA]
¡û
>W1711116532
LUBZ01000014
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
62048
62123
+
Arg
TCT
[ENA]
¡û
>W1711261767
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
1916412
1916485
+
Arg
TCT
[ENA]
¡û
>W1711283626
LZQD01000010
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
98548
98474
-
Arg
TCT
[ENA]
¡û
>W1711335577
MBQX01000015
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
14716
14643
-
Arg
TCT
[ENA]
¡û
>W1711335640
MBQY01000073
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
68832
68907
+
Arg
TCT
[ENA]
¡û
>W1711335800
MBRD01000035
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
91697
91623
-
Arg
TCT
[ENA]
¡û
>W1711711420
MTAX01000019
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
44888
44814
-
Arg
TCT
[ENA]
¡û
>W141021337
AJLL01000005
Cyanobacteriota
Fischerella thermalis PCC 7521 [AJLL]
220197
220271
+
Arg
TCT
[ENA]
¡û
>W141022925
AJWF01000011
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
309864
309790
-
Arg
TCT
[ENA]
¡û
>WENV181847338
OGVY01015379
[OGVY] freshwater metagenome; freshwater
399
325
-
Arg
TCT
[ENA]
¢þ
>WENV181852810
OGWH01004026
[OGWH] freshwater metagenome; freshwater
1359
1433
+
Arg
TCT
[ENA]
¢þ
>WENV171003381
NNBT01007853
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
422
348
-
Arg
TCT
[ENA]
¢þ
>C181105222
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
2228966
2229040
+
Arg
TCT
-
¡û
>C181137847
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
5122856
5122782
-
Arg
TCT
-
¡û
>C191001294
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
1163762
1163688
-
Arg
TCT
-
¡û
>W09125748
ACIR01000015
Cyanobacteriota
Trichormus azollae 708 [ACIR]
27494
27420
-
Arg
TCT
[ENA]
¡û
>W1910008370
BDGE01000003
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
95882
95956
+
Arg
TCT
[ENA]
¡û
>W1910020538
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
1314809
1314735
-
Arg
TCT
[ENA]
¡û
>W1910175519
BJCE01000215
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
1553
1479
-
Arg
TCT
[ENA]
¡û
>W1910596328
LAGY01000085
Cyanobacteriota
Nostoc linckia z2 [LAGY]
3812
3738
-
Arg
TCT
[ENA]
¡û
>W1910646707
LWSY01000184
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
32210
32136
-
Arg
TCT
[ENA]
¡û
>W1910805255
MTPU01000010
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
68520
68594
+
Arg
TCT
[ENA]
¡û
>W1910859263
NBYN01000009
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
53041
52967
-
Arg
TCT
[ENA]
¡û
>W1910909821
NGZU01000066
Cyanobacteriota
Fischerella thermalis WC114 [NGZU]
115546
115472
-
Arg
TCT
[ENA]
¡û
>W1910909859
NGZV01000088
Cyanobacteriota
Fischerella thermalis WC157 [NGZV]
72903
72977
+
Arg
TCT
[ENA]
¡û
>W1910910208
NHAE01000122
Cyanobacteriota
Fischerella thermalis WC439 [NHAE]
11385
11459
+
Arg
TCT
[ENA]
¡û
>W1910943188
NJHS01000117
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
10751
10824
+
Arg
TCT
[ENA]
¡û
>W1910943224
NJHT01000172
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
10084
10157
+
Arg
TCT
[ENA]
¡û
>W1910943249
NJHU01000027
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
9353
9426
+
Arg
TCT
[ENA]
¡û
>W1910943307
NJHV01000541
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
17879
17806
-
Arg
TCT
[ENA]
¡û
>W1910943349
NJHW01000456
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
45920
45847
-
Arg
TCT
[ENA]
¡û
>W1910943374
NJHX01000045
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
8794
8867
+
Arg
TCT
[ENA]
¡û
>W1910943410
NJHY01000022
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
43371
43298
-
Arg
TCT
[ENA]
¡û
>W1910943463
NJHZ01000193
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
21826
21753
-
Arg
TCT
[ENA]
¡û
>W1910943514
NJIA01000322
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
9784
9857
+
Arg
TCT
[ENA]
¡û
>W1911118733
NOLJ01000002
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
900307
900381
+
Arg
TCT
[ENA]
¡û
>W1911153648
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
1657153
1657227
+
Arg
TCT
[ENA]
¡û
>W1911153688
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
1844359
1844433
+
Arg
TCT
[ENA]
¡û
>W1911244258
NSHF01000039
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
21820
21746
-
Arg
TCT
[ENA]
¡û
>W1810355663
PVMC01000054
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
21402
21329
-
Arg
TCT
[ENA]
¡û
>W10106030
ACYA01000032
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
86972
87045
+
Arg
TCT
[ENA]
¡û
>W10106064
ACYB01000029
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
41324
41249
-
Arg
TCT
[ENA]
¡û
>W11108353
ACYA01000032
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
86972
87045
+
Arg
TCT
[ENA]
¡û
>W11108387
ACYB01000029
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
41324
41249
-
Arg
TCT
[ENA]
¡û
>C11115553
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
5134341
5134267
-
Arg
TCT
[Ensembl]
¡û
>C161038866
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
135391
135465
+
Arg
TCT
[Ensembl]
¡û
>C131004205
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
18223
18149
-
Arg
TCT
[Ensembl]
¡û
>C131005070
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
6377524
6377598
+
Arg
TCT
[Ensembl]
¡û
>W1610744828
LMVE01000115
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
14789
14716
-
Arg
TCT
[ENA]
¡û
>W1610927774
LUBZ01000014
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
62048
62123
+
Arg
TCT
[ENA]
¡û
>W1610931000
LUFH01000028
Cyanobacteriota
Sphaerospermopsis aphanizomenoides BCCUSP55 [LUFH]
8036
8110
+
Arg
TCT
[ENA]
¡û
>W1611023742
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
1916412
1916485
+
Arg
TCT
[ENA]
¡û
>W1611066507
MBRD01000035
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
91697
91623
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK