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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239843 (29 seq.)
>W1710855065
LLXZ01000176
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
22670
22746
+
Met
CAT
[ENA]
¡û
>WENV181308349
OFIS01006281
[OFIS] sludge metagenome; sludge
1322
1246
-
fMet
CAT
[ENA]
¡û
>W141151098
AXAU01000005
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
360580
360656
+
Met
CAT
[ENA]
¡û
>WENV170006937
AMWB02069437
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
476
400
-
Met
CAT
[ENA]
¡û
>W1911242779
NSGA01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
216199
216123
-
Met
CAT
[ENA]
¡û
>W1810390404
PXYK01000076
Alphaproteobacteria
Mesorhizobium ephedrae 6GN30 [PXYK]
688
612
-
Met
CAT
[ENA]
¡û
>W2010724843
JACIDQ010000007
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
8669
8745
+
fMet
CAT
[ENA]
¡û
>W2011068087
NSGA01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
216199
216123
-
fMet
CAT
[ENA]
¡û
>W2011523290
SADN02000003
Alphaproteobacteria
Mesorhizobium sp. M00.F.Ca.ET.170.01.1.1 [SADN]
212120
212044
-
fMet
CAT
[ENA]
¡û
>W2110189045
JABVCF010000025
Alphaproteobacteria
Pseudaminobacter sp. HC 19 HC19 [JABVCF]
149
225
+
fMet
CAT
[ENA]
¡û
>C211124095
CP059692
Alphaproteobacteria
Aureimonas sp. LMG 31693 [CP059692]
403978
404054
+
fMet
CAT
-
¡û
>C241024349
CP022222
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 051011 [CP022222]
945635
945559
-
fMet
CAT
-
¡û
>C241070672
CP042968
Alphaproteobacteria
Bradyrhizobium paxllaeri LMTR 21 [CP042968]
7137964
7137888
-
fMet
CAT
-
¡û
>C161003898
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
331705
331629
-
Met
CAT
[Ensembl]
¡û
>C161003899
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
331584
331508
-
Met
CAT
[Ensembl]
¡û
>C161097208
CP016428
Alphaproteobacteria
Bradyrhizobium icense LMTR 13 [CP016428]
7403751
7403675
-
Met
CAT
[Ensembl]
¡û
>W1610042613
BAXV01000049
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
37
113
+
Met
CAT
[ENA]
¡û
>W1610042619
BAXV01000101
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
10177
10101
-
Met
CAT
[ENA]
¡û
>W1610056465
BBWH01000028
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
101507
101583
+
Met
CAT
[ENA]
¡û
>W1610056590
BBWJ01000062
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
23409
23333
-
Met
CAT
[ENA]
¡û
>W1610057027
BBWS01000057
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
111803
111727
-
Met
CAT
[ENA]
¡û
>W1610057028
BBWS01000057
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
111683
111607
-
Met
CAT
[ENA]
¡û
>W1610717406
LLXZ01000176
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
22670
22746
+
Met
CAT
[ENA]
¡û
>W1710039707
BAXV01000049
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
37
113
+
Met
CAT
[ENA]
¡û
>W1710039713
BAXV01000101
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
10177
10101
-
Met
CAT
[ENA]
¡û
>W1710053164
BBWH01000028
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
101507
101583
+
Met
CAT
[ENA]
¡û
>W1710053289
BBWJ01000062
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
23409
23333
-
Met
CAT
[ENA]
¡û
>W1710053726
BBWS01000057
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
111803
111727
-
Met
CAT
[ENA]
¡û
>W1710053727
BBWS01000057
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
111683
111607
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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