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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239884 (39 seq.)
>W131053726
ANAH01000083
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
26226
26299
+
Lys
TTT
[ENA]
¡û
>W131086633
AOBT01000018
Myxococcota
Myxococcus xanthus DZF1 [AOBT]
64008
64080
+
Lys
TTT
[ENA]
¡û
>W1711625294
MPIN01000024
Myxococcota
Cystobacter ferrugineus [MPIN]
68147
68074
-
Lys
TTT
[ENA]
¡û
>W1711628629
MPOI01000007
Myxococcota
Archangium sp. Cb G35 [MPOI]
549760
549833
+
Lys
TTT
[ENA]
¡û
>C014518
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
3732450
3732378
-
Lys
TTT
[Ensembl]
¡û
>w012136
AAMD01000027
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
36392
36317
-
Lys
TTT
[ENA]
¡û
>WENV180372858
OBOI01142487
[OBOI] sediment metagenome; sediment
56
128
+
Lys
TTT
[ENA]
¢þ
>WENV183676409
ORJL011619545
[ORJL] groundwater metagenome; groundwater
543
615
+
Lys
TTT
[ENA]
¢þ
>C181057887
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
4417776
4417703
-
Lys
TTT
-
¡û
>C181059818
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
7317323
7317396
+
Lys
TTT
-
¡û
>C181060659
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
3768386
3768314
-
Lys
TTT
-
¡û
>C191013155
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
3795423
3795351
-
Lys
TTT
-
¡û
>C191013220
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
3684139
3684067
-
Lys
TTT
-
¡û
>C191013287
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
3540568
3540496
-
Lys
TTT
-
¡û
>C191013351
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
3777106
3777034
-
Lys
TTT
-
¡û
>C191013416
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
3727512
3727440
-
Lys
TTT
-
¡û
>C191013481
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
3727512
3727440
-
Lys
TTT
-
¡û
>C191128691
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
3409419
3409347
-
Lys
TTT
-
¡û
>W141695193
JMCB01000009
Myxococcota
Hyalangium minutum [JMCB]
111059
111132
+
Lys
TTT
[ENA]
¡û
>W141695228
JMCC01000019
Myxococcota
Enhygromyxa salina [JMCC]
20354
20281
-
Lys
TTT
[ENA]
¡û
>W141806650
JPMI01000142
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
51666
51739
+
Lys
TTT
[ENA]
¡û
>W1911701628
QNUN01000022
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
26563
26491
-
Lys
TTT
[ENA]
¡û
>W1810452247
PZOX01000032
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
49605
49532
-
Lys
TTT
[ENA]
¡û
>W1810884661
QUMU01000001
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
245494
245421
-
Lys
TTT
[ENA]
¡û
>C151008176
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
6627427
6627499
+
Lys
TTT
[Ensembl]
¡û
>C151083571
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
7999642
7999715
+
Lys
TTT
[Ensembl]
¡û
>C151091006
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
4776570
4776642
+
Lys
TTT
[Ensembl]
¡û
>C11114348
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
5642502
5642430
-
Lys
TTT
[Ensembl]
¡û
>C11119141
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
4368181
4368108
-
Lys
TTT
[Ensembl]
¡û
>C121012091
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
3631256
3631184
-
Lys
TTT
[Ensembl]
¡û
>W121102896
AKXT01000058
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
18217
18145
-
Lys
TTT
[ENA]
¡û
>W121103098
AKYI01000063
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
10143
10215
+
Lys
TTT
[ENA]
¡û
>C131011683
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
6103675
6103603
-
Lys
TTT
[Ensembl]
¡û
>WENV077602
AAFX01069843
Soil microbial communities from Minnesota Farm
237
162
-
Lys
TTT
[ENA]
>W1710513740
FNAJ01000021
Myxococcota
Myxococcus virescens [FNAJ]
116535
116607
+
Lys
TTT
[ENA]
¡û
>W1710529813
FNOH01000013
Myxococcota
Myxococcus xanthus [FNOH]
137956
137884
-
Lys
TTT
[ENA]
¡û
>W1710544125
FOAP01000021
Myxococcota
Stigmatella aurantiaca [FOAP]
102495
102422
-
Lys
TTT
[ENA]
¡û
>W1710553985
FOIB01000005
Myxococcota
Myxococcus fulvus [FOIB]
120386
120458
+
Lys
TTT
[ENA]
¡û
>W1710554351
FOIJ01000009
Myxococcota
Stigmatella erecta [FOIJ]
310302
310229
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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